CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 270 | P270L | P6722L | nonsyn | cCt | cTt | 3748 | 3745 | 0.9992 | 20428-20430 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 3745 | 3748 | All | 0.000716 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1079 | 1079 | B.1.565 | 0.874392 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 777 | 778 | B.1.1.7 | 0.000696 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 267 | 267 | AY.4 | 0.000416 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 239 | 239 | AY.5 | 0.004935 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 120 | 120 | AY.47 | 0.003733 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 106 | 106 | B.1.617.2 | 0.000399 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 84 | 84 | AY.44 | 0.000511 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 71 | 71 | B.1.1 | 0.001288 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 64 | 64 | AY.43 | 0.000284 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 60 | 60 | AY.103 | 0.000373 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 59 | 59 | B.1.177.83 | 0.087407 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 57 | 57 | B.1.369 | 0.016258 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 55 | 55 | B.1 | 0.000504 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 42 | 42 | AY.26 | 0.001189 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 34 | 34 | B.1.177 | 0.000448 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 31 | 31 | B.1.160 | 0.000967 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 26 | 26 | AD.1 | 0.106996 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 26 | 26 | P.1 | 0.00041 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 25 | 25 | B.1.2 | 0.00022 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 23 | 24 | B.6 | 0.020928 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 21 | 21 | AY.121 | 0.002842 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 20 | 20 | AY.25 | 0.00012 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 19 | 19 | B.1.1.519 | 0.000755 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 16 | 16 | AY.102 | 0.000424 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 16 | 16 | B.1.177.42 | 0.014311 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 14 | 14 | AY.118 | 0.000877 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 14 | 14 | B.1.336 | 0.034146 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 13 | 13 | B.1.480 | 0.032338 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 12 | 12 | B.1.351 | 0.000357 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 12 | 12 | B.6.6 | 0.010667 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 11 | 11 | AY.3 | 0.000109 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 11 | 11 | B.1.1.317 | 0.004529 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 11 | 11 | B.1.378 | 0.075342 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 10 | 10 | B.1.429 | 0.000235 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 9 | 9 | AY.39 | 0.000222 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 9 | 9 | B.1.1.214 | 0.000499 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 8 | 8 | AY.105 | 0.005145 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 8 | 8 | B.1.1.216 | 0.007124 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 7 | 7 | AY.23 | 0.000488 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 7 | 7 | AY.9 | 0.000473 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 7 | 7 | Q.3 | 0.001015 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 6 | 6 | AY.46.6 | 0.000433 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 6 | 6 | B.1.469 | 0.021661 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 5 | 5 | B.1.305 | 0.010753 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 5 | 5 | B.1.466.2 | 0.001956 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 5 | 5 | R.1 | 0.00045 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 4 | 4 | B.1.139 | 0.002933 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 4 | 4 | B.1.177.9 | 0.005326 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 4 | 4 | B.40 | 0.001457 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 3 | 3 | AY.86 | 0.00249 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 3 | 3 | AY.95 | 0.002283 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 3 | 3 | B.1.177.23 | 0.009709 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | AY.88 | 0.001768 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | B.1.177.11 | 0.003396 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | B.1.177.62 | 0.002384 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | B.1.210 | 0.004264 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | C.35 | 0.001548 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.1.225 | 0.007194 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.1.229 | 0.005747 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.1.484 | 0.1 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.105 | 0.009615 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.160.12 | 0.00641 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.532 | 0.006211 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.542 | 0.03125 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp15A1-B | 270 | P270L | cCt | cTt | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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