CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 270

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp15A1-B	270	P270L	P6722L	nonsyn	cCt	cTt	3748	3745	0.9992	20428-20430
ORF1ab/nsp15A1-B	270	P270L	P6722L	nonsyn	cCT	cTA	3748	2	0.000533618	20428-20430
ORF1ab/nsp15A1-B	270	P270L	P6722L	nonsyn	cCT	cTC	3748	1	0.000266809	20428-20430
ORF1ab/nsp15A1-B	270	P270S	P6722S	nonsyn	Cct	Tct	1302	1298	0.996928	20428-20430
ORF1ab/nsp15A1-B	270	P270S	P6722S	nonsyn	CcT	TcC	1302	2	0.0015361	20428-20430
ORF1ab/nsp15A1-B	270	P270S	P6722S	nonsyn	CcT	TcG	1302	2	0.0015361	20428-20430
ORF1ab/nsp15A1-B	270	P270P	P6722P	syn	ccT	ccC	259	247	0.953668	20428-20430
ORF1ab/nsp15A1-B	270	P270P	P6722P	syn	ccT	ccA	259	8	0.030888	20428-20430
ORF1ab/nsp15A1-B	270	P270P	P6722P	syn	ccT	ccG	259	4	0.015444	20428-20430
ORF1ab/nsp15A1-B	270	P270H	P6722H	nonsyn	cCt	cAt	94	92	0.978723	20428-20430
ORF1ab/nsp15A1-B	270	P270H	P6722H	nonsyn	cCT	cAC	94	2	0.0212766	20428-20430
ORF1ab/nsp15A1-B	270	P270T	P6722T	nonsyn	Cct	Act	48	48	1	20428-20430
ORF1ab/nsp15A1-B	270	P270del	P6722del	del	CCT	---	45	45	1	20428-20430
ORF1ab/nsp15A1-B	270	P270A	P6722A	nonsyn	Cct	Gct	6	6	1	20428-20430
ORF1ab/nsp15A1-B	270	P270del1	P6722del1	del	Cct	-ct	5	5	1	20428-20430
ORF1ab/nsp15A1-B	270	P270R	P6722R	nonsyn	cCt	cGt	4	4	1	20428-20430
ORF1ab/nsp15A1-B	270	P270Y	P6722Y	nonsyn	CCt	TAt	4	3	0.75	20428-20430
ORF1ab/nsp15A1-B	270	P270Y	P6722Y	nonsyn	CCT	TAC	4	1	0.25	20428-20430
ORF1ab/nsp15A1-B	270	P270D	P6722D	nonsyn	CCt	GAt	2	2	1	20428-20430
ORF1ab/nsp15A1-B	270	P270F	P6722F	nonsyn	CCt	TTt	1	1	1	20428-20430

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	3745	3748	All	0.000716
ORF1ab/nsp15A1-B	270	P270L	cCT	cTA	2	3748	All	0
ORF1ab/nsp15A1-B	270	P270L	cCT	cTC	1	3748	All	0
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1298	1302	All	0.000248
ORF1ab/nsp15A1-B	270	P270S	CcT	TcG	2	1302	All	0
ORF1ab/nsp15A1-B	270	P270S	CcT	TcC	2	1302	All	0
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1079	1079	B.1.565	0.874392
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	777	778	B.1.1.7	0.000696
ORF1ab/nsp15A1-B	270	P270L	cCT	cTA	1	778	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	267	267	AY.4	0.000416
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	247	259	All	0.000047
ORF1ab/nsp15A1-B	270	P270P	ccT	ccA	8	259	All	0.000002
ORF1ab/nsp15A1-B	270	P270P	ccT	ccG	4	259	All	0.000001
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	239	239	AY.5	0.004935
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	229	229	B.1.1.7	0.000205
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	156	156	AY.4	0.000243
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	120	120	AY.47	0.003733
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	106	106	B.1.617.2	0.000399
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	92	94	All	0.000018
ORF1ab/nsp15A1-B	270	P270H	cCT	cAC	2	94	All	0
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	93	93	AY.43	0.000412
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	84	84	AY.44	0.000511
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	71	71	B.1.1	0.001288
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	64	64	AY.43	0.000284
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	60	60	AY.103	0.000373
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	59	59	B.1.177.83	0.087407
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	57	57	B.1.369	0.016258
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	55	55	B.1	0.000504
ORF1ab/nsp15A1-B	270	P270T	Cct	Act	48	48	All	0.000009
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	46	46	B.1.617.2	0.000173
ORF1ab/nsp15A1-B	270	P270del	CCT	---	45	45	All	0.000009
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	45	45	B.1.1.277	0.034143
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	42	42	AY.26	0.001189
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	39	39	B.1.177.86	0.007155
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	36	36	B.1.1.214	0.001996
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	34	34	B.1.177	0.000448
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	33	33	B.1.2	0.000291
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	33	33	B.1.369	0.009412
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	31	31	AY.116	0.00889
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	31	31	B.1.160	0.000967
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	27	28	AY.25	0.000162
ORF1ab/nsp15A1-B	270	P270S	CcT	TcC	1	28	AY.25	0.000006
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	28	28	B.1.1.153	0.030668
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	27	27	AY.103	0.000168
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	27	27	AY.44	0.000164
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	26	26	AD.1	0.106996
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	26	26	AY.118	0.001629
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	26	26	P.1	0.00041
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	25	25	B.1.2	0.00022
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	25	25	P.1	0.000394
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	23	24	B.6	0.020928
ORF1ab/nsp15A1-B	270	P270L	cCT	cTC	1	24	B.6	0.00091
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	23	23	B.1	0.000211
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	23	23	Q.3	0.003336
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	22	22	B.1.1	0.000399
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	21	21	AY.121	0.002842
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	21	21	AY.46.6	0.001516
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	20	20	AY.25	0.00012
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	20	20	B.1.1.518	0.126582
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	19	19	AY.3	0.000189
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	18	19	AY.3	0.000179
ORF1ab/nsp15A1-B	270	P270P	ccT	ccA	1	19	AY.3	0.00001
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	19	19	B.1.1.519	0.000755
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	16	17	AY.4	0.000025
ORF1ab/nsp15A1-B	270	P270P	ccT	ccA	1	17	AY.4	0.000002
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	17	17	AY.43	0.000075
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	16	16	AY.102	0.000424
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	16	16	B.1.177.42	0.014311
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	15	15	AY.9.1	0.001256
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	15	15	B.1.177	0.000198
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	15	15	P.1.12	0.00726
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	14	14	AY.118	0.000877
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	14	14	B.1.160	0.000437
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	14	14	B.1.336	0.034146
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	13	13	B.1.480	0.032338
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	12	12	AY.46.6	0.000866
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	12	12	B.1.177.18	0.013921
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	12	12	B.1.177.6	0.011719
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	12	12	B.1.351	0.000357
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	12	12	B.6.6	0.010667
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	11	11	AY.3	0.000109
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	11	11	AY.44	0.000067
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	11	11	AY.74	0.001272
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	11	11	B.1.1.317	0.004529
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	11	11	B.1.378	0.075342
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	10	10	AY.26	0.000283
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	10	10	AY.4.4	0.004092
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	10	10	B.1.1.317	0.004117
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	10	10	B.1.429	0.000235
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	10	10	B.1.526	0.000235
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	10	10	C.37	0.001161
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	9	9	AY.39	0.000222
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	9	9	B.1.1.214	0.000499
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	8	8	AY.105	0.005145
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	8	8	B.1.1.216	0.007124
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	8	8	B.1.311	0.002197
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	7	7	AY.23	0.000488
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	7	7	AY.9	0.000473
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	7	7	B.1.1.225	0.05036
ORF1ab/nsp15A1-B	270	P270T	Cct	Act	7	7	B.1.1.7	0.000006
ORF1ab/nsp15A1-B	270	P270T	Cct	Act	7	7	B.1.427	0.000353
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	7	7	B.1.525	0.000792
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	7	7	B.1.617.2	0.000026
ORF1ab/nsp15A1-B	270	P270T	Cct	Act	7	7	B.1.627	0.014141
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	7	7	Q.3	0.001015
ORF1ab/nsp15A1-B	270	P270del	CCT	---	6	6		0.333333
ORF1ab/nsp15A1-B	270	P270A	Cct	Gct	6	6	All	0.000001
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	6	6	AY.100	0.000276
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	6	6	AY.29	0.000095
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	6	6	AY.46	0.000624
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	6	6	AY.46.6	0.000433
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	6	6	AY.7	0.001176
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	6	6	B.1.1.416	0.00543
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	6	6	B.1.221	0.000426
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	6	6	B.1.36	0.000875
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	6	6	B.1.469	0.021661
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	6	6	B.1.596	0.000523
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	6	6	B.1.628	0.002114
ORF1ab/nsp15A1-B	270	P270del1	Cct	-ct	5	5	All	0.000001
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	5	5	AT.1	0.025641
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	5	5	AY.20	0.000194
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	5	5	AY.29	0.000079
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	5	5	AY.4.2	0.000108
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	5	5	B	0.000639
ORF1ab/nsp15A1-B	270	P270T	Cct	Act	5	5	B.1	0.000046
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	5	5	B.1.1.519	0.000199
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	5	5	B.1.1.525	0.027322
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	5	5	B.1.1.7	0.000004
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	5	5	B.1.258.17	0.00052
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	5	5	B.1.305	0.010753
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	5	5	B.1.369	0.001426
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	5	5	B.1.466.2	0.001956
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	5	5	R.1	0.00045
ORF1ab/nsp15A1-B	270	P270S	CcT	TcG	2	4		0.111111
ORF1ab/nsp15A1-B	270	P270S	CcT	TcC	1	4		0.055556
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	4		0.055556
ORF1ab/nsp15A1-B	270	P270R	cCt	cGt	4	4	All	0.000001
ORF1ab/nsp15A1-B	270	P270Y	CCt	TAt	3	4	All	0.000001
ORF1ab/nsp15A1-B	270	P270Y	CCT	TAC	1	4	All	0
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	4	4	AY.100	0.000184
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	4	4	AY.23	0.000279
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	4	4	AY.3.1	0.000341
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	4	4	AY.33	0.000267
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	4	4	AY.39	0.000099
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	4	4	AY.4	0.000006
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	4	4	AY.4.2.1	0.000596
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	4	4	AY.45	0.000487
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	4	4	AY.5	0.000083
ORF1ab/nsp15A1-B	270	P270del	CCT	---	4	4	AY.59	0.002119
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	4	4	AY.75.1	0.000721
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	4	4	AY.98.1	0.000194
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	4	4	B.1.139	0.002933
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	4	4	B.1.177	0.000053
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	4	4	B.1.177.9	0.005326
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	4	4	B.1.258	0.000266
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	4	4	B.1.427	0.000202
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	4	4	B.1.429	0.000094
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	4	4	B.1.596	0.000349
ORF1ab/nsp15A1-B	270	P270del	CCT	---	4	4	B.1.617.2	0.000015
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	4	4	B.1.621	0.000354
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	4	4	B.40	0.001457
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	4	4	B.40	0.001457
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	4	4	B.6.6	0.003556
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	4	4	D.2	0.0003
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	4	4	P.1	0.000063
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	4	4	P.1.14	0.000191
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	3	3	A.2.4	0.010101
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	3	3	AY.10	0.00159
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	3	3	AY.102	0.00008
ORF1ab/nsp15A1-B	270	P270T	Cct	Act	3	3	AY.103	0.000019
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	3	3	AY.115	0.015625
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	3	3	AY.119	0.000106
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	3	3	AY.120	0.000112
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	3	3	AY.20	0.000117
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	3	3	AY.30	0.001187
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	3	3	AY.36	0.000445
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	3	3	AY.42	0.000121
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	3	3	AY.43	0.000013
ORF1ab/nsp15A1-B	270	P270del	CCT	---	3	3	AY.43	0.000013
ORF1ab/nsp15A1-B	270	P270T	Cct	Act	3	3	AY.7.2	0.001678
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	3	3	AY.75	0.000168
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	3	3	AY.86	0.00249
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	3	3	AY.95	0.002283
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	3	3	B.1	0.000027
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	3	3	B.1	0.000027
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	3	3	B.1.1	0.000054
ORF1ab/nsp15A1-B	270	P270del	CCT	---	3	3	B.1.1.7	0.000003
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	3	3	B.1.127	0.006593
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	3	3	B.1.177.23	0.009709
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	3	3	B.1.177.33	0.004934
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	3	3	B.1.177.59	0.048387
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	3	3	B.1.2	0.000026
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	3	3	B.1.221	0.000213
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	3	3	B.1.234	0.000396
ORF1ab/nsp15A1-B	270	P270del	CCT	---	3	3	B.1.258	0.0002
ORF1ab/nsp15A1-B	270	P270P	ccT	ccG	2	3	B.1.429	0.000047
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	1	3	B.1.429	0.000024
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	3	3	B.1.595	0.000783
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	3	3	P.1.15	0.000697
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	3	3	P.1.15	0.000697
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	3	3	P.1.17	0.000485
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	1	2		0.055556
ORF1ab/nsp15A1-B	270	P270H	cCT	cAC	1	2		0.055556
ORF1ab/nsp15A1-B	270	P270Y	CCt	TAt	1	2		0.055556
ORF1ab/nsp15A1-B	270	P270Y	CCT	TAC	1	2		0.055556
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	A.2.2	0.003378
ORF1ab/nsp15A1-B	270	P270D	CCt	GAt	2	2	All	0
ORF1ab/nsp15A1-B	270	P270del	CCT	---	2	2	AY.102	0.000053
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	AY.107	0.000932
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	AY.109	0.001479
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	AY.110	0.000225
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	AY.113	0.000285
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	AY.117	0.000169
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	AY.119	0.000071
ORF1ab/nsp15A1-B	270	P270P	ccT	ccA	2	2	AY.23	0.000139
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	2	2	AY.25	0.000012
ORF1ab/nsp15A1-B	270	P270H	cCT	cAC	1	2	AY.25	0.000006
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	1	2	AY.25	0.000006
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	2	2	AY.26	0.000057
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	AY.34	0.000194
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	AY.39.1	0.000079
ORF1ab/nsp15A1-B	270	P270T	Cct	Act	2	2	AY.4	0.000003
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	AY.4.2	0.000043
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	AY.4.5	0.000215
ORF1ab/nsp15A1-B	270	P270P	ccT	ccA	2	2	AY.4.5	0.000215
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	AY.42	0.00008
ORF1ab/nsp15A1-B	270	P270del	CCT	---	2	2	AY.44	0.000012
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	AY.46	0.000208
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	AY.46.2	0.001271
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	AY.46.5	0.000397
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	AY.47	0.000062
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	AY.61	0.00021
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	AY.65	0.001066
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	AY.85	0.000854
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	AY.88	0.001768
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	AY.99.2	0.000184
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	B	0.000256
ORF1ab/nsp15A1-B	270	P270A	Cct	Gct	2	2	B.1.1	0.000036
ORF1ab/nsp15A1-B	270	P270R	cCt	cGt	2	2	B.1.1	0.000036
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	B.1.1.161	0.007067
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	B.1.1.194	0.009901
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	B.1.1.297	0.004474
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	2	2	B.1.1.7	0.000002
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	B.1.160.28	0.005848
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	2	2	B.1.177	0.000026
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	B.1.177.10	0.001756
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	B.1.177.11	0.003396
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	B.1.177.62	0.002384
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	B.1.177.88	0.024691
ORF1ab/nsp15A1-B	270	P270T	Cct	Act	2	2	B.1.2	0.000018
ORF1ab/nsp15A1-B	270	P270del	CCT	---	2	2	B.1.2	0.000018
ORF1ab/nsp15A1-B	270	P270del1	Cct	-ct	2	2	B.1.2	0.000018
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	B.1.210	0.004264
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	B.1.234	0.000264
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	B.1.241	0.001623
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	B.1.243	0.000139
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	B.1.351	0.000059
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	B.1.351.2	0.000605
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	B.1.36.18	0.00084
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	B.1.36.29	0.001035
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	B.1.36.29	0.001035
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	B.1.382	0.017857
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	B.1.416	0.002538
ORF1ab/nsp15A1-B	270	P270del	CCT	---	2	2	B.1.517	0.000854
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	B.1.517	0.000854
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	B.1.517	0.000854
ORF1ab/nsp15A1-B	270	P270T	Cct	Act	2	2	B.1.525	0.000226
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	B.1.525	0.000226
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	B.1.564	0.000852
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	B.1.609	0.000959
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	B.1.621	0.000177
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	B.1.637	0.000146
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	C.35	0.001548
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	2	2	P.1	0.000032
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	P.1.14	0.000096
ORF1ab/nsp15A1-B	270	P270del	CCT	---	2	2	P.1.15	0.000465
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	2	2	P.1.15	0.000465
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	P.1.4	0.001953
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	2	2	P.2	0.000373
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	2	2	P.2	0.000373
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	1	1		0.055556
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	A	0.000387
ORF1ab/nsp15A1-B	270	P270del	CCT	---	1	1	A.2.4	0.003367
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	A.2.4	0.003367
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	1	1	A.5	0.001923
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AD.2	0.000219
ORF1ab/nsp15A1-B	270	P270F	CCt	TTt	1	1	All	0
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AP.1	0.001502
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.10	0.00053
ORF1ab/nsp15A1-B	270	P270P	ccT	ccG	1	1	AY.100	0.000046
ORF1ab/nsp15A1-B	270	P270R	cCt	cGt	1	1	AY.102	0.000027
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	1	1	AY.102	0.000027
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	1	1	AY.103	0.000006
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	1	1	AY.103	0.000006
ORF1ab/nsp15A1-B	270	P270del1	Cct	-ct	1	1	AY.103	0.000006
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.106	0.000335
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	1	1	AY.114	0.000231
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	1	1	AY.114	0.000231
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.116	0.000287
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.117	0.000085
ORF1ab/nsp15A1-B	270	P270P	ccT	ccA	1	1	AY.120	0.000037
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.120.1	0.000321
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.120.1	0.000321
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.121	0.000135
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.13	0.000161
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.13	0.000161
ORF1ab/nsp15A1-B	270	P270T	Cct	Act	1	1	AY.14	0.000088
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.14	0.000088
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.14	0.000088
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.15	0.002222
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.16.1	0.00047
ORF1ab/nsp15A1-B	270	P270T	Cct	Act	1	1	AY.20	0.000039
ORF1ab/nsp15A1-B	270	P270del	CCT	---	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	270	P270del	CCT	---	1	1	AY.26	0.000028
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.27	0.000065
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	1	1	AY.29	0.000016
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	1	1	AY.29	0.000016
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	1	1	AY.3	0.00001
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.32	0.000532
ORF1ab/nsp15A1-B	270	P270T	Cct	Act	1	1	AY.33	0.000067
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.34	0.000097
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	1	1	AY.34.1	0.00051
ORF1ab/nsp15A1-B	270	P270del	CCT	---	1	1	AY.4	0.000002
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.4.1	0.000737
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	1	1	AY.4.2.1	0.000149
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.40	0.000964
ORF1ab/nsp15A1-B	270	P270del	CCT	---	1	1	AY.42	0.00004
ORF1ab/nsp15A1-B	270	P270del1	Cct	-ct	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.46.4	0.000165
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.46.5	0.000198
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	270	P270del	CCT	---	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.48	0.000465
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	1	1	AY.5	0.000021
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.5.3	0.000337
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.5.4	0.000277
ORF1ab/nsp15A1-B	270	P270L	cCT	cTA	1	1	AY.54	0.000095
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.59	0.00053
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.59	0.00053
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.6	0.000041
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.6	0.000041
ORF1ab/nsp15A1-B	270	P270T	Cct	Act	1	1	AY.63	0.000387
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.66	0.00107
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.67	0.000464
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.67	0.000464
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.68	0.000274
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.69	0.000187
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.69	0.000187
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.7.2	0.000559
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.7.2	0.000559
ORF1ab/nsp15A1-B	270	P270Y	CCt	TAt	1	1	AY.71	0.000475
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.73	0.000665
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.75	0.000056
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.75.1	0.00018
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.77	0.001127
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.82	0.001357
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.85	0.000427
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.86	0.00083
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.9	0.000068
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.9.1	0.000084
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.9.2	0.000037
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AY.93	0.000273
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.94	0.000443
ORF1ab/nsp15A1-B	270	P270T	Cct	Act	1	1	AY.98	0.000079
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.98.1	0.000048
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AY.99.2	0.000092
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	AZ.1	0.000867
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	AZ.5	0.003509
ORF1ab/nsp15A1-B	270	P270del	CCT	---	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	270	P270F	CCt	TTt	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.1.1	0.000327
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	1	1	B.1.1.101	0.01
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.1.117	0.009709
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.1.214	0.000055
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.1.222	0.000204
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.1.222	0.000204
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.1.225	0.007194
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.1.229	0.005747
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.1.243	0.004082
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.1.273	0.006757
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.1.277	0.000759
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.1.28	0.000311
ORF1ab/nsp15A1-B	270	P270A	Cct	Gct	1	1	B.1.1.326	0.001761
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.1.37	0.000193
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.1.409	0.002833
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	1	1	B.1.1.448	0.002033
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.1.47	0.005348
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.1.484	0.1
ORF1ab/nsp15A1-B	270	P270T	Cct	Act	1	1	B.1.1.50	0.000679
ORF1ab/nsp15A1-B	270	P270A	Cct	Gct	1	1	B.1.1.517	0.006803
ORF1ab/nsp15A1-B	270	P270T	Cct	Act	1	1	B.1.1.519	0.00004
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.1.521	0.005348
ORF1ab/nsp15A1-B	270	P270A	Cct	Gct	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	270	P270D	CCt	GAt	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	270	P270del	CCT	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.105	0.009615
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.146	0.004237
ORF1ab/nsp15A1-B	270	P270R	cCt	cGt	1	1	B.1.160	0.000031
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.160.12	0.00641
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	1	1	B.1.177.23	0.003236
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.177.35	0.000691
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.177.53	0.002392
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.177.60	0.000218
ORF1ab/nsp15A1-B	270	P270del	CCT	---	1	1	B.1.177.68	0.015152
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.177.7	0.000165
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.177.7	0.000165
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.177.75	0.001041
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.177.86	0.000183
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.177.9	0.001332
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.213	0.014925
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.214.2	0.0006
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	1	1	B.1.221	0.000071
ORF1ab/nsp15A1-B	270	P270Y	CCt	TAt	1	1	B.1.221	0.000071
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.221.3	0.000833
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.237	0.004975
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	1	1	B.1.243	0.00007
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.243	0.00007
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.279	0.000514
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.284	0.013158
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.329	0.000608
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.350	0.002933
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.36.1	0.00114
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.36.10	0.004785
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.36.31	0.001751
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.36.8	0.001
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.367	0.000792
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	1	1	B.1.367	0.000792
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.375	0.00082
ORF1ab/nsp15A1-B	270	P270del	CCT	---	1	1	B.1.375	0.00082
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.400	0.000429
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	1	1	B.1.400.1	0.015152
ORF1ab/nsp15A1-B	270	P270D	CCt	GAt	1	1	B.1.416	0.001269
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	1	1	B.1.422	0.000812
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	1	1	B.1.424	0.008065
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.433	0.003195
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	1	1	B.1.438.1	0.000107
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	1	1	B.1.439	0.005917
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.466.2	0.000391
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.470	0.001404
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.520	0.021739
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.526	0.000024
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.532	0.006211
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.542	0.03125
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.560	0.00463
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.561	0.000397
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.568	0.001111
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.575	0.000303
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	1	1	B.1.575	0.000303
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.580	0.004065
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.582	0.000491
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.590	0.004545
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.595.4	0.007299
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.599	0.00365
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.609	0.000479
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.612	0.002653
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.617.1	0.000129
ORF1ab/nsp15A1-B	270	P270del1	Cct	-ct	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	270	P270T	Cct	Act	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	270	P270del	CCT	---	1	1	B.1.620	0.000946
ORF1ab/nsp15A1-B	270	P270del	CCT	---	1	1	B.1.621.1	0.000506
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	B.1.628	0.000352
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.628	0.000352
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.637	0.000073
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.1.9	0.006173
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	B.3.1	0.001658
ORF1ab/nsp15A1-B	270	P270P	ccT	ccG	1	1	B.55	0.00295
ORF1ab/nsp15A1-B	270	P270A	Cct	Gct	1	1	B.6	0.00091
ORF1ab/nsp15A1-B	270	P270T	Cct	Act	1	1	B.6	0.00091
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	1	1	B.6	0.00091
ORF1ab/nsp15A1-B	270	P270P	ccT	ccA	1	1	B.6.6	0.000889
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	C.1	0.002392
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	1	1	C.18	0.002591
ORF1ab/nsp15A1-B	270	P270P	ccT	ccC	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	270	P270H	cCt	cAt	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	K.1	0.02381
ORF1ab/nsp15A1-B	270	P270T	Cct	Act	1	1	N.4	0.004255
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	P.1.1	0.000318
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	P.1.16	0.000374
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	Q.1	0.000126
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	Q.2	0.000613
ORF1ab/nsp15A1-B	270	P270L	cCt	cTt	1	1	Q.8	0.000165
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	Q.8	0.000165
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	R.1	0.00009
ORF1ab/nsp15A1-B	270	P270S	Cct	Tct	1	1	W.1	0.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.