CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 264 | E264del | E6716del | del | GAA | --- | 499 | 499 | 1 | 20410-20412 |
ORF1ab/nsp15A1-B | 264 | E264V | E6716V | nonsyn | gAa | gTa | 495 | 494 | 0.99798 | 20410-20412 |
ORF1ab/nsp15A1-B | 264 | E264V | E6716V | nonsyn | gAA | gTT | 495 | 1 | 0.0020202 | 20410-20412 |
ORF1ab/nsp15A1-B | 264 | E264K | E6716K | nonsyn | Gaa | Aaa | 278 | 278 | 1 | 20410-20412 |
ORF1ab/nsp15A1-B | 264 | E264E | E6716E | syn | gaA | gaG | 273 | 273 | 1 | 20410-20412 |
ORF1ab/nsp15A1-B | 264 | E264A | E6716A | nonsyn | gAa | gCa | 227 | 227 | 1 | 20410-20412 |
ORF1ab/nsp15A1-B | 264 | E264G | E6716G | nonsyn | gAa | gGa | 116 | 116 | 1 | 20410-20412 |
ORF1ab/nsp15A1-B | 264 | E264D | E6716D | nonsyn | gaA | gaC | 92 | 59 | 0.641304 | 20410-20412 |
ORF1ab/nsp15A1-B | 264 | E264D | E6716D | nonsyn | gaA | gaT | 92 | 33 | 0.358696 | 20410-20412 |
ORF1ab/nsp15A1-B | 264 | E264X | E6716X | nonsyn | Gaa | Taa | 32 | 25 | 0.78125 | 20410-20412 |
ORF1ab/nsp15A1-B | 264 | E264X | E6716X | nonsyn | GAa | TGa | 32 | 6 | 0.1875 | 20410-20412 |
ORF1ab/nsp15A1-B | 264 | E264X | E6716X | nonsyn | GaA | TaG | 32 | 1 | 0.03125 | 20410-20412 |
ORF1ab/nsp15A1-B | 264 | E264N | E6716N | nonsyn | GaA | AaT | 16 | 16 | 1 | 20410-20412 |
ORF1ab/nsp15A1-B | 264 | E264del1 | E6716del1 | del | gAa | g-a | 8 | 2 | 0.25 | 20410-20412 |
ORF1ab/nsp15A1-B | 264 | E264del1 | E6716del1 | del | Gaa | -aa | 8 | 2 | 0.25 | 20410-20412 |
ORF1ab/nsp15A1-B | 264 | E264del1 | E6716del1 | del | gAA | g-T | 8 | 1 | 0.125 | 20410-20412 |
ORF1ab/nsp15A1-B | 264 | E264del1 | E6716del1 | del | GAA | -NN | 8 | 1 | 0.125 | 20410-20412 |
ORF1ab/nsp15A1-B | 264 | E264del1 | E6716del1 | del | gAA | gG- | 8 | 1 | 0.125 | 20410-20412 |
ORF1ab/nsp15A1-B | 264 | E264del1 | E6716del1 | del | gAA | g-N | 8 | 1 | 0.125 | 20410-20412 |
ORF1ab/nsp15A1-B | 264 | E264Q | E6716Q | nonsyn | Gaa | Caa | 3 | 3 | 1 | 20410-20412 |
ORF1ab/nsp15A1-B | 264 | E264del2 | E6716del2 | del | gAA | g-- | 2 | 2 | 1 | 20410-20412 |
ORF1ab/nsp15A1-B | 264 | E264L | E6716L | nonsyn | GAa | TTa | 1 | 1 | 1 | 20410-20412 |
ORF1ab/nsp15A1-B | 264 | E264S | E6716S | nonsyn | GAa | TCa | 1 | 1 | 1 | 20410-20412 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 499 | 499 | All | 0.000095 |
ORF1ab/nsp15A1-B | 264 | E264V | gAa | gTa | 494 | 495 | All | 0.000094 |
ORF1ab/nsp15A1-B | 264 | E264V | gAA | gTT | 1 | 495 | All | 0 |
ORF1ab/nsp15A1-B | 264 | E264V | gAa | gTa | 469 | 469 | AY.4 | 0.00073 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 305 | 305 | AY.4 | 0.000475 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 278 | 278 | All | 0.000053 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 273 | 273 | All | 0.000052 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 227 | 227 | All | 0.000043 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 148 | 148 | B.1.177.18 | 0.171694 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 133 | 133 | B.1.617.2 | 0.000501 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 116 | 116 | All | 0.000022 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 59 | 92 | All | 0.000011 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaT | 33 | 92 | All | 0.000006 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 78 | 78 | AY.44 | 0.000475 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 56 | 56 | AY.4 | 0.000087 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 45 | 45 | B.1.1.7 | 0.00004 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 45 | 45 | XA | 1 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 41 | 41 | AY.102 | 0.001087 |
ORF1ab/nsp15A1-B | 264 | E264X | Gaa | Taa | 25 | 32 | All | 0.000005 |
ORF1ab/nsp15A1-B | 264 | E264X | GAa | TGa | 6 | 32 | All | 0.000001 |
ORF1ab/nsp15A1-B | 264 | E264X | GaA | TaG | 1 | 32 | All | 0 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 30 | 30 | B.1.1.7 | 0.000027 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 20 | 20 | AY.25 | 0.00012 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 18 | 18 | AY.44 | 0.00011 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 17 | 17 | B.1.617.2 | 0.000064 |
ORF1ab/nsp15A1-B | 264 | E264N | GaA | AaT | 16 | 16 | All | 0.000003 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 16 | 16 | B.1.2 | 0.000141 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaT | 16 | 16 | B.1.564.1 | 0.025237 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 14 | 14 | AY.3 | 0.000139 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 14 | 14 | B.1.617.2 | 0.000053 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 10 | 13 | B.1.1.7 | 0.000009 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaT | 3 | 13 | B.1.1.7 | 0.000003 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 8 | 8 | 0.444444 | |
ORF1ab/nsp15A1-B | 264 | E264del1 | Gaa | -aa | 2 | 8 | All | 0 |
ORF1ab/nsp15A1-B | 264 | E264del1 | gAa | g-a | 2 | 8 | All | 0 |
ORF1ab/nsp15A1-B | 264 | E264del1 | gAA | g-N | 1 | 8 | All | 0 |
ORF1ab/nsp15A1-B | 264 | E264del1 | GAA | -NN | 1 | 8 | All | 0 |
ORF1ab/nsp15A1-B | 264 | E264del1 | gAA | gG- | 1 | 8 | All | 0 |
ORF1ab/nsp15A1-B | 264 | E264del1 | gAA | g-T | 1 | 8 | All | 0 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 8 | 8 | B.1.623 | 0.004292 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 7 | 7 | AY.46.4 | 0.001152 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 7 | 7 | B.1.243 | 0.000487 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 7 | 7 | B.1.517 | 0.002989 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp15A1-B | 264 | E264X | Gaa | Taa | 7 | 7 | B.6 | 0.006369 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp15A1-B | 264 | E264X | Gaa | Taa | 4 | 6 | B.1 | 0.000037 |
ORF1ab/nsp15A1-B | 264 | E264X | GAa | TGa | 2 | 6 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 6 | 6 | B.1.36.1 | 0.006842 |
ORF1ab/nsp15A1-B | 264 | E264V | gAa | gTa | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 5 | 5 | AY.5.4 | 0.001384 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 5 | 5 | AY.95 | 0.003805 |
ORF1ab/nsp15A1-B | 264 | E264X | Gaa | Taa | 5 | 5 | B.6.6 | 0.004444 |
ORF1ab/nsp15A1-B | 264 | E264V | gAa | gTa | 5 | 5 | N.5 | 0.008834 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp15A1-B | 264 | E264N | GaA | AaT | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 3 | 4 | AY.43 | 0.000013 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaT | 1 | 4 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 4 | 4 | B.1.177.12 | 0.000607 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp15A1-B | 264 | E264Q | Gaa | Caa | 3 | 3 | All | 0.000001 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaT | 2 | 3 | AY.4 | 0.000003 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 1 | 3 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaT | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp15A1-B | 264 | E264X | Gaa | Taa | 2 | 3 | B.1.1 | 0.000036 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaT | 2 | 3 | B.1.1 | 0.000036 |
ORF1ab/nsp15A1-B | 264 | E264X | GAa | TGa | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 264 | E264N | GaA | AaT | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp15A1-B | 264 | E264X | Gaa | Taa | 1 | 2 | 0.055556 | |
ORF1ab/nsp15A1-B | 264 | E264X | GAa | TGa | 1 | 2 | 0.055556 | |
ORF1ab/nsp15A1-B | 264 | E264del2 | gAA | g-- | 2 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp15A1-B | 264 | E264V | gAa | gTa | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp15A1-B | 264 | E264V | gAa | gTa | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp15A1-B | 264 | E264V | gAa | gTa | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 2 | 2 | B | 0.000256 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 2 | 2 | B.1.1.347 | 0.036364 |
ORF1ab/nsp15A1-B | 264 | E264V | gAa | gTa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp15A1-B | 264 | E264X | Gaa | Taa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 2 | 2 | B.1.128 | 0.001271 |
ORF1ab/nsp15A1-B | 264 | E264N | GaA | AaT | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaT | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp15A1-B | 264 | E264V | gAa | gTa | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp15A1-B | 264 | E264X | GAa | TGa | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 264 | E264X | Gaa | Taa | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 2 | 2 | B.1.536 | 0.047619 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 1 | 1 | 0.055556 | |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 1 | 1 | A.16 | 0.016129 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaT | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 1 | 1 | A.24 | 0.071429 |
ORF1ab/nsp15A1-B | 264 | E264S | GAa | TCa | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 264 | E264L | GAa | TTa | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp15A1-B | 264 | E264Q | Gaa | Caa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 264 | E264N | GaA | AaT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 264 | E264X | Gaa | Taa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp15A1-B | 264 | E264del1 | GAA | -NN | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp15A1-B | 264 | E264N | GaA | AaT | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 264 | E264del2 | gAA | g-- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp15A1-B | 264 | E264del1 | gAA | gG- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 264 | E264X | GaA | TaG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 264 | E264del1 | Gaa | -aa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp15A1-B | 264 | E264Q | Gaa | Caa | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp15A1-B | 264 | E264V | gAa | gTa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 264 | E264N | GaA | AaT | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 264 | E264S | GAa | TCa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 264 | E264N | GaA | AaT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 264 | E264V | gAa | gTa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 1 | 1 | B.1.1.115 | 0.008929 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp15A1-B | 264 | E264del1 | gAA | g-N | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp15A1-B | 264 | E264V | gAA | gTT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp15A1-B | 264 | E264X | Gaa | Taa | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp15A1-B | 264 | E264N | GaA | AaT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 264 | E264L | GAa | TTa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 264 | E264del1 | Gaa | -aa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 264 | E264Q | Gaa | Caa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 264 | E264N | GaA | AaT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp15A1-B | 264 | E264del1 | gAA | g-T | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp15A1-B | 264 | E264X | Gaa | Taa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 264 | E264del2 | gAA | g-- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 264 | E264del1 | gAa | g-a | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | B.1.289 | 0.00266 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp15A1-B | 264 | E264V | gAa | gTa | 1 | 1 | B.1.348 | 0.018182 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp15A1-B | 264 | E264del1 | gAa | g-a | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaC | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp15A1-B | 264 | E264V | gAa | gTa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp15A1-B | 264 | E264A | gAa | gCa | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 264 | E264N | GaA | AaT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp15A1-B | 264 | E264X | GAa | TGa | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp15A1-B | 264 | E264K | Gaa | Aaa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp15A1-B | 264 | E264del | GAA | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp15A1-B | 264 | E264D | gaA | gaT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp15A1-B | 264 | E264E | gaA | gaG | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp15A1-B | 264 | E264G | gAa | gGa | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|