CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 259 | K259K | K6711K | syn | aaG | aaA | 1175 | 1175 | 1 | 20395-20397 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1175 | 1175 | All | 0.000225 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 133 | 133 | B.1.1.7 | 0.000119 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 125 | 125 | B.1.582 | 0.061335 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 84 | 84 | B.1.617.2 | 0.000316 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 66 | 66 | B.1.177 | 0.000869 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 64 | 64 | B.1.429 | 0.001506 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 56 | 56 | AY.4 | 0.000087 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 46 | 46 | AY.25 | 0.000277 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 44 | 44 | B.1.2 | 0.000387 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 41 | 41 | B.1.306 | 0.234286 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 35 | 35 | AY.39 | 0.000865 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 33 | 33 | P.1 | 0.00052 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 26 | 26 | B.1.1 | 0.000472 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 24 | 24 | B.1.526 | 0.000564 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 23 | 23 | AY.103 | 0.000143 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 23 | 23 | AY.43 | 0.000102 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 20 | 20 | B.1 | 0.000183 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 20 | 20 | B.1.427 | 0.00101 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 19 | 19 | B.1.1.402 | 0.211111 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 16 | 16 | AY.3.1 | 0.001364 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 13 | 13 | AY.29.1 | 0.002867 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 12 | 12 | AY.29 | 0.000189 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 11 | 11 | B.1.243 | 0.000765 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 11 | 11 | B.1.351.2 | 0.003328 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 9 | 9 | AY.102 | 0.000239 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 9 | 9 | AY.4.2 | 0.000195 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 8 | 8 | P.1.14 | 0.000382 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 6 | 6 | B.1.497 | 0.001889 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 5 | 5 | B.1.1.220 | 0.009294 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 5 | 5 | B.1.565 | 0.004052 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 4 | 4 | AY.12 | 0.001264 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 4 | 4 | B.1.448 | 0.010499 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 3 | 3 | B.1.470 | 0.004213 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 3 | 3 | B.1.551 | 0.003871 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 3 | 3 | B.1.612 | 0.007958 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 2 | 2 | 0.111111 | |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 2 | 2 | B.1.1.354 | 0.008772 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | AE.3 | 0.032258 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | B.1.177.41 | 0.0025 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp15A1-B | 259 | K259K | aaG | aaA | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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