CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 259

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B259K259RK6711RnonsynaAgaGg24889248780.99955820395-20397
ORF1ab/nsp15A1-B259K259RK6711RnonsynaAGaGA24889110.00044196220395-20397
ORF1ab/nsp15A1-B259K259NK6711NnonsynaaGaaT127612730.99764920395-20397
ORF1ab/nsp15A1-B259K259NK6711NnonsynaaGaaC127630.002351120395-20397
ORF1ab/nsp15A1-B259K259KK6711KsynaaGaaA11751175120395-20397
ORF1ab/nsp15A1-B259K259EK6711EnonsynAagGag96950.98958320395-20397
ORF1ab/nsp15A1-B259K259EK6711EnonsynAaGGaA9610.010416720395-20397
ORF1ab/nsp15A1-B259K259delK6711deldelAAG---4343120395-20397
ORF1ab/nsp15A1-B259K259MK6711MnonsynaAgaTg2222120395-20397
ORF1ab/nsp15A1-B259K259TK6711TnonsynaAgaCg1515120395-20397
ORF1ab/nsp15A1-B259K259del1K6711del1delAag-ag15110.73333320395-20397
ORF1ab/nsp15A1-B259K259del1K6711del1delaaGaa-1520.13333320395-20397
ORF1ab/nsp15A1-B259K259del1K6711del1delAaG-aT1510.066666720395-20397
ORF1ab/nsp15A1-B259K259del1K6711del1delAAg-Gg1510.066666720395-20397
ORF1ab/nsp15A1-B259K259SK6711SnonsynaAGaGT1313120395-20397
ORF1ab/nsp15A1-B259K259XK6711XnonsynAagTag640.66666720395-20397
ORF1ab/nsp15A1-B259K259XK6711XnonsynAaGTaA620.33333320395-20397
ORF1ab/nsp15A1-B259K259DK6711DnonsynAaGGaT210.520395-20397
ORF1ab/nsp15A1-B259K259QK6711QnonsynAagCag210.520395-20397
ORF1ab/nsp15A1-B259K259QK6711QnonsynAaGCaA210.520395-20397
ORF1ab/nsp15A1-B259K259DK6711DnonsynAaGGaC210.520395-20397
ORF1ab/nsp15A1-B259K259HK6711HnonsynAaGCaT11120395-20397
ORF1ab/nsp15A1-B259K259AK6711AnonsynAAGGCC11120395-20397
ORF1ab/nsp15A1-B259K259PK6711PnonsynAAgCCg11120395-20397

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B259K259RaAgaGg2487824889All0.004758
ORF1ab/nsp15A1-B259K259RaAGaGA1124889All0.000002
ORF1ab/nsp15A1-B259K259RaAgaGg88738879B.1.617.20.033411
ORF1ab/nsp15A1-B259K259RaAGaGA68879B.1.617.20.000023
ORF1ab/nsp15A1-B259K259RaAgaGg72797282B.1.617.10.938741
ORF1ab/nsp15A1-B259K259RaAGaGA37282B.1.617.10.000387
ORF1ab/nsp15A1-B259K259RaAgaGg41354135AY.350.963645
ORF1ab/nsp15A1-B259K259RaAgaGg16861686AY.480.784186
ORF1ab/nsp15A1-B259K259NaaGaaT12731276All0.000243
ORF1ab/nsp15A1-B259K259NaaGaaC31276All0.000001
ORF1ab/nsp15A1-B259K259KaaGaaA11751175All0.000225
ORF1ab/nsp15A1-B259K259NaaGaaT592593B.1.1.70.00053
ORF1ab/nsp15A1-B259K259NaaGaaC1593B.1.1.70.000001
ORF1ab/nsp15A1-B259K259RaAgaGg517518AY.16.10.242951
ORF1ab/nsp15A1-B259K259RaAGaGA1518AY.16.10.00047
ORF1ab/nsp15A1-B259K259RaAgaGg377377AY.40.000587
ORF1ab/nsp15A1-B259K259RaAgaGg205205AY.440.001248
ORF1ab/nsp15A1-B259K259RaAgaGg203203B.10.001859
ORF1ab/nsp15A1-B259K259NaaGaaT181181AY.430.000802
ORF1ab/nsp15A1-B259K259RaAgaGg176176AY.130.028332
ORF1ab/nsp15A1-B259K259NaaGaaT140140B.1.5750.042476
ORF1ab/nsp15A1-B259K259KaaGaaA133133B.1.1.70.000119
ORF1ab/nsp15A1-B259K259RaAgaGg127128AY.1080.140022
ORF1ab/nsp15A1-B259K259RaAGaGA1128AY.1080.001103
ORF1ab/nsp15A1-B259K259KaaGaaA125125B.1.5820.061335
ORF1ab/nsp15A1-B259K259RaAgaGg9898AY.230.006835
ORF1ab/nsp15A1-B259K259RaAgaGg9797AY.1030.000602
ORF1ab/nsp15A1-B259K259EAagGag9596All0.000018
ORF1ab/nsp15A1-B259K259EAaGGaA196All0
ORF1ab/nsp15A1-B259K259KaaGaaA8484B.1.617.20.000316
ORF1ab/nsp15A1-B259K259RaAgaGg7777B.1.1.70.000069
ORF1ab/nsp15A1-B259K259RaAgaGg7373B.1.1770.000961
ORF1ab/nsp15A1-B259K259KaaGaaA6666B.1.1770.000869
ORF1ab/nsp15A1-B259K259KaaGaaA6464B.1.4290.001506
ORF1ab/nsp15A1-B259K259RaAgaGg5757AY.590.030191
ORF1ab/nsp15A1-B259K259RaAgaGg5757AY.920.016375
ORF1ab/nsp15A1-B259K259KaaGaaA5656AY.40.000087
ORF1ab/nsp15A1-B259K259KaaGaaA4646AY.250.000277
ORF1ab/nsp15A1-B259K259NaaGaaT4545B.1.617.20.000169
ORF1ab/nsp15A1-B259K259RaAgaGg4444AY.980.003476
ORF1ab/nsp15A1-B259K259KaaGaaA4444B.1.20.000387
ORF1ab/nsp15A1-B259K259delAAG---4343All0.000008
ORF1ab/nsp15A1-B259K259RaAgaGg4343AY.540.0041
ORF1ab/nsp15A1-B259K259KaaGaaA4141B.1.3060.234286
ORF1ab/nsp15A1-B259K259RaAgaGg3939AY.660.041711
ORF1ab/nsp15A1-B259K259RaAgaGg3737AY.430.000164
ORF1ab/nsp15A1-B259K259RaAgaGg3636AY.190.041049
ORF1ab/nsp15A1-B259K259KaaGaaA3535AY.390.000865
ORF1ab/nsp15A1-B259K259KaaGaaA3333P.10.00052
ORF1ab/nsp15A1-B259K259NaaGaaT3131AY.40.000048
ORF1ab/nsp15A1-B259K259EAagGag3131AY.4.20.000672
ORF1ab/nsp15A1-B259K259RaAgaGg3030AY.750.001681
ORF1ab/nsp15A1-B259K259RaAgaGg3030B.1.2140.10989
ORF1ab/nsp15A1-B259K259RaAgaGg2828AY.370.00885
ORF1ab/nsp15A1-B259K259RaAgaGg2828B.1.177.550.065268
ORF1ab/nsp15A1-B259K259KaaGaaA2626B.1.10.000472
ORF1ab/nsp15A1-B259K259NaaGaaT2525B.1.3060.142857
ORF1ab/nsp15A1-B259K259RaAgaGg2424B.1.1.5190.000953
ORF1ab/nsp15A1-B259K259KaaGaaA2424B.1.5260.000564
ORF1ab/nsp15A1-B259K259KaaGaaA2323AY.1030.000143
ORF1ab/nsp15A1-B259K259KaaGaaA2323AY.430.000102
ORF1ab/nsp15A1-B259K259MaAgaTg2222All0.000004
ORF1ab/nsp15A1-B259K259NaaGaaT2222AY.1020.000583
ORF1ab/nsp15A1-B259K259NaaGaaT2222P.10.000347
ORF1ab/nsp15A1-B259K259EAagGag2121AY.250.000126
ORF1ab/nsp15A1-B259K259RaAgaGg2121AY.5.40.005811
ORF1ab/nsp15A1-B259K259KaaGaaA2020B.10.000183
ORF1ab/nsp15A1-B259K259NaaGaaT2020B.1.160.140.042373
ORF1ab/nsp15A1-B259K259KaaGaaA2020B.1.4270.00101
ORF1ab/nsp15A1-B259K259KaaGaaA1919B.1.1.4020.211111
ORF1ab/nsp15A1-B259K259RaAgaGg1818AY.1160.005162
ORF1ab/nsp15A1-B259K259RaAgaGg1818AY.390.000445
ORF1ab/nsp15A1-B259K259RaAgaGg1818B.1.36.290.009312
ORF1ab/nsp15A1-B259K259RaAgaGg1616AY.250.000096
ORF1ab/nsp15A1-B259K259KaaGaaA1616AY.3.10.001364
ORF1ab/nsp15A1-B259K259RaAgaGg1616P.20.002986
ORF1ab/nsp15A1-B259K259TaAgaCg1515All0.000003
ORF1ab/nsp15A1-B259K259del1Aag-ag1115All0.000002
ORF1ab/nsp15A1-B259K259del1aaGaa-215All0
ORF1ab/nsp15A1-B259K259del1AaG-aT115All0
ORF1ab/nsp15A1-B259K259del1AAg-Gg115All0
ORF1ab/nsp15A1-B259K259RaAgaGg1515AY.470.000467
ORF1ab/nsp15A1-B259K259SaAGaGT1313All0.000002
ORF1ab/nsp15A1-B259K259KaaGaaA1313AY.29.10.002867
ORF1ab/nsp15A1-B259K259KaaGaaA1313AY.30.000129
ORF1ab/nsp15A1-B259K259RaAgaGg1313AY.610.001362
ORF1ab/nsp15A1-B259K259RaAgaGg1313AY.680.003559
ORF1ab/nsp15A1-B259K259NaaGaaT1313B.10.000119
ORF1ab/nsp15A1-B259K259RaAgaGg1313B.1.10.000236
ORF1ab/nsp15A1-B259K259KaaGaaA1212AY.290.000189
ORF1ab/nsp15A1-B259K259SaAGaGT1212B.1.617.20.000045
ORF1ab/nsp15A1-B259K259RaAgaGg1111AY.200.000428
ORF1ab/nsp15A1-B259K259NaaGaaT1111AY.250.000066
ORF1ab/nsp15A1-B259K259RaAgaGg1111AY.620.004793
ORF1ab/nsp15A1-B259K259RaAgaGg1111B.1.20.000097
ORF1ab/nsp15A1-B259K259KaaGaaA1111B.1.2430.000765
ORF1ab/nsp15A1-B259K259KaaGaaA1111B.1.351.20.003328
ORF1ab/nsp15A1-B259K259RaAgaGg1010AY.4.2.10.00149
ORF1ab/nsp15A1-B259K259RaAgaGg1010AY.520.008143
ORF1ab/nsp15A1-B259K259RaAgaGg1010AY.550.009174
ORF1ab/nsp15A1-B259K259RaAgaGg1010P.10.000158
ORF1ab/nsp15A1-B259K259KaaGaaA99AY.1020.000239
ORF1ab/nsp15A1-B259K259RaAgaGg99AY.1210.001218
ORF1ab/nsp15A1-B259K259KaaGaaA99AY.200.00035
ORF1ab/nsp15A1-B259K259KaaGaaA99AY.4.20.000195
ORF1ab/nsp15A1-B259K259KaaGaaA99AY.440.000055
ORF1ab/nsp15A1-B259K259NaaGaaT99AY.440.000055
ORF1ab/nsp15A1-B259K259NaaGaaT99AY.50.000186
ORF1ab/nsp15A1-B259K259NaaGaaT99B.1.1.2970.020134
ORF1ab/nsp15A1-B259K259RaAgaGg99B.1.4290.000212
ORF1ab/nsp15A1-B259K259NaaGaaT99C.360.008197
ORF1ab/nsp15A1-B259K259NaaGaaT99P.1.140.00043
ORF1ab/nsp15A1-B259K259RaAgaGg88AY.1180.000501
ORF1ab/nsp15A1-B259K259RaAgaGg88AY.240.003448
ORF1ab/nsp15A1-B259K259RaAgaGg88AY.770.009019
ORF1ab/nsp15A1-B259K259RaAgaGg88AY.9.20.000294
ORF1ab/nsp15A1-B259K259RaAgaGg88B.1.177.810.001515
ORF1ab/nsp15A1-B259K259MaAgaTg88B.1.6290.106667
ORF1ab/nsp15A1-B259K259MaAgaTg88P.10.000126
ORF1ab/nsp15A1-B259K259KaaGaaA88P.1.140.000382
ORF1ab/nsp15A1-B259K259RaAgaGg88P.1.70.002554
ORF1ab/nsp15A1-B259K259RaAgaGg77AY.870.005828
ORF1ab/nsp15A1-B259K259RaAgaGg77B.1.1.3730.166667
ORF1ab/nsp15A1-B259K259NaaGaaT67B.1.20.000053
ORF1ab/nsp15A1-B259K259NaaGaaC17B.1.20.000009
ORF1ab/nsp15A1-B259K259EAagGag77P.10.00011
ORF1ab/nsp15A1-B259K259delAAG---660.333333
ORF1ab/nsp15A1-B259K259XAagTag46All0.000001
ORF1ab/nsp15A1-B259K259XAaGTaA26All0
ORF1ab/nsp15A1-B259K259delAAG---66AY.590.003178
ORF1ab/nsp15A1-B259K259RaAgaGg66AY.640.003571
ORF1ab/nsp15A1-B259K259RaAgaGg66AY.98.10.000291
ORF1ab/nsp15A1-B259K259RaAgaGg66B0.000767
ORF1ab/nsp15A1-B259K259EAagGag66B.1.1.3170.00247
ORF1ab/nsp15A1-B259K259delAAG---66B.1.1.70.000005
ORF1ab/nsp15A1-B259K259EAagGag66B.1.1.70.000005
ORF1ab/nsp15A1-B259K259NaaGaaT66B.1.1770.000079
ORF1ab/nsp15A1-B259K259KaaGaaA66B.1.4970.001889
ORF1ab/nsp15A1-B259K259RaAgaGg55AY.1000.00023
ORF1ab/nsp15A1-B259K259KaaGaaA55AY.1180.000313
ORF1ab/nsp15A1-B259K259RaAgaGg55AY.4.50.000537
ORF1ab/nsp15A1-B259K259RaAgaGg55AY.420.000201
ORF1ab/nsp15A1-B259K259RaAgaGg55AY.450.000608
ORF1ab/nsp15A1-B259K259KaaGaaA55B.1.1.2200.009294
ORF1ab/nsp15A1-B259K259KaaGaaA55B.1.1600.000156
ORF1ab/nsp15A1-B259K259NaaGaaT55B.1.1600.000156
ORF1ab/nsp15A1-B259K259KaaGaaA55B.1.3510.000149
ORF1ab/nsp15A1-B259K259NaaGaaT55B.1.36.170.00247
ORF1ab/nsp15A1-B259K259KaaGaaA55B.1.5650.004052
ORF1ab/nsp15A1-B259K259NaaGaaT44A.30.008386
ORF1ab/nsp15A1-B259K259KaaGaaA44AY.1000.000184
ORF1ab/nsp15A1-B259K259RaAgaGg44AY.1020.000106
ORF1ab/nsp15A1-B259K259NaaGaaT44AY.1090.002959
ORF1ab/nsp15A1-B259K259RaAgaGg44AY.1170.000338
ORF1ab/nsp15A1-B259K259KaaGaaA44AY.120.001264
ORF1ab/nsp15A1-B259K259RaAgaGg44AY.30.00004
ORF1ab/nsp15A1-B259K259KaaGaaA44AY.39.10.000158
ORF1ab/nsp15A1-B259K259RaAgaGg44AY.50.000083
ORF1ab/nsp15A1-B259K259RaAgaGg44AY.560.006421
ORF1ab/nsp15A1-B259K259RaAgaGg44AY.880.003537
ORF1ab/nsp15A1-B259K259NaaGaaT44B.1.10.000073
ORF1ab/nsp15A1-B259K259KaaGaaA44B.1.1.2220.000816
ORF1ab/nsp15A1-B259K259RaAgaGg44B.1.2430.000278
ORF1ab/nsp15A1-B259K259KaaGaaA44B.1.4480.010499
ORF1ab/nsp15A1-B259K259KaaGaaA44B.1.5960.000349
ORF1ab/nsp15A1-B259K259del1Aag-ag34B.1.617.20.000011
ORF1ab/nsp15A1-B259K259del1AAg-Gg14B.1.617.20.000004
ORF1ab/nsp15A1-B259K259KaaGaaA44B.1.6210.000354
ORF1ab/nsp15A1-B259K259KaaGaaA44P.1.150.000929
ORF1ab/nsp15A1-B259K259RaAgaGg33A0.001161
ORF1ab/nsp15A1-B259K259NaaGaaT33AY.1060.001005
ORF1ab/nsp15A1-B259K259RaAgaGg33AY.1190.000106
ORF1ab/nsp15A1-B259K259KaaGaaA33AY.1200.000112
ORF1ab/nsp15A1-B259K259NaaGaaT33AY.1210.000406
ORF1ab/nsp15A1-B259K259RaAgaGg33AY.220.006276
ORF1ab/nsp15A1-B259K259RaAgaGg33AY.260.000085
ORF1ab/nsp15A1-B259K259NaaGaaT33AY.390.000074
ORF1ab/nsp15A1-B259K259RaAgaGg33AY.4.20.000065
ORF1ab/nsp15A1-B259K259delAAG---33AY.430.000013
ORF1ab/nsp15A1-B259K259KaaGaaA33AY.460.000312
ORF1ab/nsp15A1-B259K259RaAgaGg33AY.460.000312
ORF1ab/nsp15A1-B259K259RaAgaGg33AY.530.000863
ORF1ab/nsp15A1-B259K259RaAgaGg33AY.710.001425
ORF1ab/nsp15A1-B259K259RaAgaGg33AY.780.004622
ORF1ab/nsp15A1-B259K259NaaGaaT33AY.90.000203
ORF1ab/nsp15A1-B259K259KaaGaaA33AY.9.20.00011
ORF1ab/nsp15A1-B259K259del1Aag-ag23B.1.10.000036
ORF1ab/nsp15A1-B259K259del1aaGaa-13B.1.10.000018
ORF1ab/nsp15A1-B259K259RaAgaGg33B.1.1.2140.000166
ORF1ab/nsp15A1-B259K259KaaGaaA33B.1.1.280.000934
ORF1ab/nsp15A1-B259K259NaaGaaT33B.1.1.3470.054545
ORF1ab/nsp15A1-B259K259KaaGaaA33B.1.1.4340.001046
ORF1ab/nsp15A1-B259K259TaAgaCg33B.1.1.70.000003
ORF1ab/nsp15A1-B259K259RaAgaGg33B.1.1600.000094
ORF1ab/nsp15A1-B259K259RaAgaGg33B.1.177.730.001699
ORF1ab/nsp15A1-B259K259delAAG---33B.1.20.000026
ORF1ab/nsp15A1-B259K259delAAG---33B.1.2580.0002
ORF1ab/nsp15A1-B259K259NaaGaaT33B.1.3510.000089
ORF1ab/nsp15A1-B259K259RaAgaGg33B.1.36.180.001261
ORF1ab/nsp15A1-B259K259RaAgaGg33B.1.3620.004622
ORF1ab/nsp15A1-B259K259KaaGaaA33B.1.4700.004213
ORF1ab/nsp15A1-B259K259KaaGaaA33B.1.5510.003871
ORF1ab/nsp15A1-B259K259NaaGaaT33B.1.5960.000261
ORF1ab/nsp15A1-B259K259KaaGaaA33B.1.6120.007958
ORF1ab/nsp15A1-B259K259NaaGaaT33P.1.150.000697
ORF1ab/nsp15A1-B259K259KaaGaaA33P.20.00056
ORF1ab/nsp15A1-B259K259KaaGaaA220.111111
ORF1ab/nsp15A1-B259K259DAaGGaC12All0
ORF1ab/nsp15A1-B259K259DAaGGaT12All0
ORF1ab/nsp15A1-B259K259QAagCag12All0
ORF1ab/nsp15A1-B259K259QAaGCaA12All0
ORF1ab/nsp15A1-B259K259RaAgaGg22AY.100.00106
ORF1ab/nsp15A1-B259K259RaAgaGg22AY.1010.000981
ORF1ab/nsp15A1-B259K259NaaGaaT22AY.1030.000012
ORF1ab/nsp15A1-B259K259RaAgaGg22AY.1060.00067
ORF1ab/nsp15A1-B259K259KaaGaaA22AY.1060.00067
ORF1ab/nsp15A1-B259K259RaAgaGg22AY.110.002677
ORF1ab/nsp15A1-B259K259KaaGaaA22AY.1130.000285
ORF1ab/nsp15A1-B259K259NaaGaaT22AY.1180.000125
ORF1ab/nsp15A1-B259K259NaaGaaT22AY.1190.000071
ORF1ab/nsp15A1-B259K259KaaGaaA22AY.120.2.10.000997
ORF1ab/nsp15A1-B259K259delAAG---22AY.250.000012
ORF1ab/nsp15A1-B259K259RaAgaGg22AY.290.000032
ORF1ab/nsp15A1-B259K259NaaGaaT22AY.30.00002
ORF1ab/nsp15A1-B259K259NaaGaaT22AY.34.10.00102
ORF1ab/nsp15A1-B259K259EAagGag22AY.40.000003
ORF1ab/nsp15A1-B259K259TaAgaCg22AY.440.000012
ORF1ab/nsp15A1-B259K259XAagTag22AY.440.000012
ORF1ab/nsp15A1-B259K259KaaGaaA22AY.5.30.000675
ORF1ab/nsp15A1-B259K259KaaGaaA22AY.60.000082
ORF1ab/nsp15A1-B259K259RaAgaGg22AY.670.000929
ORF1ab/nsp15A1-B259K259RaAgaGg22AY.700.000417
ORF1ab/nsp15A1-B259K259RaAgaGg22AY.740.000231
ORF1ab/nsp15A1-B259K259RaAgaGg22AY.820.002714
ORF1ab/nsp15A1-B259K259RaAgaGg22AY.90.000135
ORF1ab/nsp15A1-B259K259NaaGaaT22AY.980.000158
ORF1ab/nsp15A1-B259K259EAagGag22AY.980.000158
ORF1ab/nsp15A1-B259K259XAagTag12B.10.000009
ORF1ab/nsp15A1-B259K259XAaGTaA12B.10.000009
ORF1ab/nsp15A1-B259K259NaaGaaT22B.1.1.1760.000879
ORF1ab/nsp15A1-B259K259NaaGaaT22B.1.1.1940.009901
ORF1ab/nsp15A1-B259K259KaaGaaA22B.1.1.2140.000111
ORF1ab/nsp15A1-B259K259NaaGaaT22B.1.1.3060.000877
ORF1ab/nsp15A1-B259K259KaaGaaA22B.1.1.3060.000877
ORF1ab/nsp15A1-B259K259NaaGaaT22B.1.1.3180.000604
ORF1ab/nsp15A1-B259K259KaaGaaA22B.1.1.3540.008772
ORF1ab/nsp15A1-B259K259KaaGaaA22B.1.1.5190.000079
ORF1ab/nsp15A1-B259K259MaAgaTg22B.1.1.70.000002
ORF1ab/nsp15A1-B259K259RaAgaGg22B.1.1570.00597
ORF1ab/nsp15A1-B259K259EAagGag22B.1.1770.000026
ORF1ab/nsp15A1-B259K259RaAgaGg22B.1.258.30.00335
ORF1ab/nsp15A1-B259K259RaAgaGg22B.1.3510.000059
ORF1ab/nsp15A1-B259K259EAaGGaA12B.1.3510.00003
ORF1ab/nsp15A1-B259K259QAaGCaA12B.1.3510.00003
ORF1ab/nsp15A1-B259K259EAagGag12B.1.3510.00003
ORF1ab/nsp15A1-B259K259QAagCag12B.1.3510.00003
ORF1ab/nsp15A1-B259K259RaAgaGg22B.1.360.000292
ORF1ab/nsp15A1-B259K259NaaGaaT22B.1.360.000292
ORF1ab/nsp15A1-B259K259KaaGaaA22B.1.3690.00057
ORF1ab/nsp15A1-B259K259TaAgaCg22B.1.4230.020408
ORF1ab/nsp15A1-B259K259KaaGaaA22B.1.4280.002041
ORF1ab/nsp15A1-B259K259delAAG---22B.1.5170.000854
ORF1ab/nsp15A1-B259K259KaaGaaA22B.1.5610.000794
ORF1ab/nsp15A1-B259K259NaaGaaT22B.1.5640.000852
ORF1ab/nsp15A1-B259K259KaaGaaA22B.1.5680.002222
ORF1ab/nsp15A1-B259K259NaaGaaT22B.1.5950.000522
ORF1ab/nsp15A1-B259K259del1Aag-ag22B.1.617.10.000258
ORF1ab/nsp15A1-B259K259EAagGag22B.1.617.20.000008
ORF1ab/nsp15A1-B259K259KaaGaaA22B.1.6370.000146
ORF1ab/nsp15A1-B259K259RaAgaGg22C.370.000232
ORF1ab/nsp15A1-B259K259RaAgaGg22D.20.00015
ORF1ab/nsp15A1-B259K259EAagGag22D.20.00015
ORF1ab/nsp15A1-B259K259TaAgaCg22P.10.000032
ORF1ab/nsp15A1-B259K259delAAG---22P.1.150.000465
ORF1ab/nsp15A1-B259K259KaaGaaA22P.1.70.000639
ORF1ab/nsp15A1-B259K259NaaGaaT22Q.80.00033
ORF1ab/nsp15A1-B259K259KaaGaaA22R.10.00018
ORF1ab/nsp15A1-B259K259NaaGaaT11A0.000387
ORF1ab/nsp15A1-B259K259del1Aag-ag11A0.000387
ORF1ab/nsp15A1-B259K259delAAG---11A.2.40.003367
ORF1ab/nsp15A1-B259K259NaaGaaT11A.23.10.000704
ORF1ab/nsp15A1-B259K259MaAgaTg11AD.20.000219
ORF1ab/nsp15A1-B259K259KaaGaaA11AE.30.032258
ORF1ab/nsp15A1-B259K259HAaGCaT11All0
ORF1ab/nsp15A1-B259K259AAAGGCC11All0
ORF1ab/nsp15A1-B259K259PAAgCCg11All0
ORF1ab/nsp15A1-B259K259EAagGag11AY.1000.000046
ORF1ab/nsp15A1-B259K259EAagGag11AY.1020.000027
ORF1ab/nsp15A1-B259K259EAagGag11AY.1030.000006
ORF1ab/nsp15A1-B259K259NaaGaaT11AY.1100.000113
ORF1ab/nsp15A1-B259K259NaaGaaT11AY.1110.000183
ORF1ab/nsp15A1-B259K259KaaGaaA11AY.1170.000085
ORF1ab/nsp15A1-B259K259KaaGaaA11AY.1190.000035
ORF1ab/nsp15A1-B259K259RaAgaGg11AY.120.000316
ORF1ab/nsp15A1-B259K259KaaGaaA11AY.120.10.000321
ORF1ab/nsp15A1-B259K259EAagGag11AY.120.10.000321
ORF1ab/nsp15A1-B259K259NaaGaaT11AY.140.000088
ORF1ab/nsp15A1-B259K259KaaGaaA11AY.160.00038
ORF1ab/nsp15A1-B259K259RaAgaGg11AY.160.00038
ORF1ab/nsp15A1-B259K259NaaGaaT11AY.16.10.00047
ORF1ab/nsp15A1-B259K259NaaGaaT11AY.200.000039
ORF1ab/nsp15A1-B259K259KaaGaaA11AY.230.00007
ORF1ab/nsp15A1-B259K259NaaGaaT11AY.240.000431
ORF1ab/nsp15A1-B259K259KaaGaaA11AY.260.000028
ORF1ab/nsp15A1-B259K259RaAgaGg11AY.270.000065
ORF1ab/nsp15A1-B259K259RaAgaGg11AY.280.00189
ORF1ab/nsp15A1-B259K259NaaGaaT11AY.290.000016
ORF1ab/nsp15A1-B259K259EAagGag11AY.30.00001
ORF1ab/nsp15A1-B259K259RaAgaGg11AY.3.10.000085
ORF1ab/nsp15A1-B259K259RaAgaGg11AY.320.000532
ORF1ab/nsp15A1-B259K259NaaGaaT11AY.330.000067
ORF1ab/nsp15A1-B259K259RaAgaGg11AY.330.000067
ORF1ab/nsp15A1-B259K259KaaGaaA11AY.370.000316
ORF1ab/nsp15A1-B259K259KaaGaaA11AY.380.000499
ORF1ab/nsp15A1-B259K259RaAgaGg11AY.380.000499
ORF1ab/nsp15A1-B259K259EAagGag11AY.390.000025
ORF1ab/nsp15A1-B259K259RaAgaGg11AY.39.10.00004
ORF1ab/nsp15A1-B259K259NaaGaaT11AY.39.10.00004
ORF1ab/nsp15A1-B259K259delAAG---11AY.40.000002
ORF1ab/nsp15A1-B259K259KaaGaaA11AY.4.10.000737
ORF1ab/nsp15A1-B259K259NaaGaaT11AY.4.20.000022
ORF1ab/nsp15A1-B259K259del1Aag-ag11AY.4.2.10.000149
ORF1ab/nsp15A1-B259K259RaAgaGg11AY.410.000294
ORF1ab/nsp15A1-B259K259NaaGaaC11AY.410.000294
ORF1ab/nsp15A1-B259K259NaaGaaT11AY.420.00004
ORF1ab/nsp15A1-B259K259EAagGag11AY.430.000004
ORF1ab/nsp15A1-B259K259NaaGaaT11AY.450.000122
ORF1ab/nsp15A1-B259K259KaaGaaA11AY.46.50.000198
ORF1ab/nsp15A1-B259K259NaaGaaT11AY.470.000031
ORF1ab/nsp15A1-B259K259KaaGaaA11AY.470.000031
ORF1ab/nsp15A1-B259K259del1AaG-aT11AY.480.000465
ORF1ab/nsp15A1-B259K259KaaGaaA11AY.50.000021
ORF1ab/nsp15A1-B259K259RaAgaGg11AY.5.30.000337
ORF1ab/nsp15A1-B259K259KaaGaaA11AY.5.40.000277
ORF1ab/nsp15A1-B259K259RaAgaGg11AY.510.000909
ORF1ab/nsp15A1-B259K259NaaGaaT11AY.540.000095
ORF1ab/nsp15A1-B259K259KaaGaaA11AY.550.000917
ORF1ab/nsp15A1-B259K259NaaGaaT11AY.580.000907
ORF1ab/nsp15A1-B259K259RaAgaGg11AY.580.000907
ORF1ab/nsp15A1-B259K259MaAgaTg11AY.590.00053
ORF1ab/nsp15A1-B259K259NaaGaaT11AY.60.000041
ORF1ab/nsp15A1-B259K259TaAgaCg11AY.610.000105
ORF1ab/nsp15A1-B259K259RaAgaGg11AY.7.10.000113
ORF1ab/nsp15A1-B259K259KaaGaaA11AY.710.000475
ORF1ab/nsp15A1-B259K259RaAgaGg11AY.75.10.00018
ORF1ab/nsp15A1-B259K259KaaGaaA11AY.75.10.00018
ORF1ab/nsp15A1-B259K259NaaGaaT11AY.840.000437
ORF1ab/nsp15A1-B259K259RaAgaGg11AY.850.000427
ORF1ab/nsp15A1-B259K259NaaGaaT11AY.850.000427
ORF1ab/nsp15A1-B259K259KaaGaaA11AY.9.10.000084
ORF1ab/nsp15A1-B259K259RaAgaGg11AY.930.000273
ORF1ab/nsp15A1-B259K259KaaGaaA11AY.940.000443
ORF1ab/nsp15A1-B259K259RaAgaGg11AY.950.000761
ORF1ab/nsp15A1-B259K259KaaGaaA11AY.98.10.000048
ORF1ab/nsp15A1-B259K259KaaGaaA11AY.990.001049
ORF1ab/nsp15A1-B259K259RaAgaGg11AY.99.20.000092
ORF1ab/nsp15A1-B259K259NaaGaaT11AY.99.20.000092
ORF1ab/nsp15A1-B259K259NaaGaaT11AZ.10.000867
ORF1ab/nsp15A1-B259K259KaaGaaA11AZ.30.00152
ORF1ab/nsp15A1-B259K259DAaGGaC11B.10.000009
ORF1ab/nsp15A1-B259K259EAagGag11B.10.000009
ORF1ab/nsp15A1-B259K259delAAG---11B.10.000009
ORF1ab/nsp15A1-B259K259TaAgaCg11B.1.10.000018
ORF1ab/nsp15A1-B259K259NaaGaaT11B.1.1.1740.003378
ORF1ab/nsp15A1-B259K259NaaGaaT11B.1.1.2010.02439
ORF1ab/nsp15A1-B259K259KaaGaaA11B.1.1.2190.005
ORF1ab/nsp15A1-B259K259NaaGaaT11B.1.1.2190.005
ORF1ab/nsp15A1-B259K259delAAG---11B.1.1.2820.011628
ORF1ab/nsp15A1-B259K259RaAgaGg11B.1.1.2940.001266
ORF1ab/nsp15A1-B259K259RaAgaGg11B.1.1.3010.001179
ORF1ab/nsp15A1-B259K259KaaGaaA11B.1.1.3040.002809
ORF1ab/nsp15A1-B259K259RaAgaGg11B.1.1.3060.000438
ORF1ab/nsp15A1-B259K259KaaGaaA11B.1.1.3090.005848
ORF1ab/nsp15A1-B259K259RaAgaGg11B.1.1.3260.001761
ORF1ab/nsp15A1-B259K259RaAgaGg11B.1.1.330.000421
ORF1ab/nsp15A1-B259K259KaaGaaA11B.1.1.3440.010753
ORF1ab/nsp15A1-B259K259EAagGag11B.1.1.3530.020833
ORF1ab/nsp15A1-B259K259KaaGaaA11B.1.1.370.000193
ORF1ab/nsp15A1-B259K259KaaGaaA11B.1.1.470.005348
ORF1ab/nsp15A1-B259K259XAagTag11B.1.1.5190.00004
ORF1ab/nsp15A1-B259K259NaaGaaT11B.1.1.5190.00004
ORF1ab/nsp15A1-B259K259KaaGaaA11B.1.1.630.000386
ORF1ab/nsp15A1-B259K259AAAGGCC11B.1.1.70.000001
ORF1ab/nsp15A1-B259K259KaaGaaA11B.1.1.700.000341
ORF1ab/nsp15A1-B259K259delAAG---11B.1.1.700.000341
ORF1ab/nsp15A1-B259K259RaAgaGg11B.1.1100.004525
ORF1ab/nsp15A1-B259K259KaaGaaA11B.1.1260.001276
ORF1ab/nsp15A1-B259K259MaAgaTg11B.1.1600.000031
ORF1ab/nsp15A1-B259K259NaaGaaT11B.1.160.290.004219
ORF1ab/nsp15A1-B259K259TaAgaCg11B.1.1770.000013
ORF1ab/nsp15A1-B259K259RaAgaGg11B.1.177.150.000631
ORF1ab/nsp15A1-B259K259RaAgaGg11B.1.177.190.001431
ORF1ab/nsp15A1-B259K259NaaGaaT11B.1.177.210.000076
ORF1ab/nsp15A1-B259K259RaAgaGg11B.1.177.240.001295
ORF1ab/nsp15A1-B259K259KaaGaaA11B.1.177.310.011494
ORF1ab/nsp15A1-B259K259RaAgaGg11B.1.177.330.001645
ORF1ab/nsp15A1-B259K259KaaGaaA11B.1.177.40.000211
ORF1ab/nsp15A1-B259K259RaAgaGg11B.1.177.40.000211
ORF1ab/nsp15A1-B259K259KaaGaaA11B.1.177.410.0025
ORF1ab/nsp15A1-B259K259EAagGag11B.1.177.540.000606
ORF1ab/nsp15A1-B259K259delAAG---11B.1.177.680.015152
ORF1ab/nsp15A1-B259K259KaaGaaA11B.1.177.810.000189
ORF1ab/nsp15A1-B259K259NaaGaaT11B.1.177.90.001332
ORF1ab/nsp15A1-B259K259PAAgCCg11B.1.20.000009
ORF1ab/nsp15A1-B259K259TaAgaCg11B.1.20.000009
ORF1ab/nsp15A1-B259K259RaAgaGg11B.1.2210.000071
ORF1ab/nsp15A1-B259K259NaaGaaT11B.1.2210.000071
ORF1ab/nsp15A1-B259K259KaaGaaA11B.1.2210.000071
ORF1ab/nsp15A1-B259K259EAagGag11B.1.2430.00007
ORF1ab/nsp15A1-B259K259del1Aag-ag11B.1.2470.014925
ORF1ab/nsp15A1-B259K259TaAgaCg11B.1.3240.001605
ORF1ab/nsp15A1-B259K259DAaGGaT11B.1.3510.00003
ORF1ab/nsp15A1-B259K259HAaGCaT11B.1.3510.00003
ORF1ab/nsp15A1-B259K259NaaGaaT11B.1.351.20.000303
ORF1ab/nsp15A1-B259K259KaaGaaA11B.1.360.000146
ORF1ab/nsp15A1-B259K259KaaGaaA11B.1.3610.001289
ORF1ab/nsp15A1-B259K259RaAgaGg11B.1.3690.000285
ORF1ab/nsp15A1-B259K259KaaGaaA11B.1.3710.001122
ORF1ab/nsp15A1-B259K259delAAG---11B.1.3750.00082
ORF1ab/nsp15A1-B259K259del1aaGaa-11B.1.4090.000781
ORF1ab/nsp15A1-B259K259KaaGaaA11B.1.4160.001269
ORF1ab/nsp15A1-B259K259KaaGaaA11B.1.4250.002994
ORF1ab/nsp15A1-B259K259NaaGaaT11B.1.4290.000024
ORF1ab/nsp15A1-B259K259RaAgaGg11B.1.438.10.000107
ORF1ab/nsp15A1-B259K259RaAgaGg11B.1.4560.003268
ORF1ab/nsp15A1-B259K259EAagGag11B.1.466.20.000391
ORF1ab/nsp15A1-B259K259NaaGaaT11B.1.466.20.000391
ORF1ab/nsp15A1-B259K259RaAgaGg11B.1.5170.000427
ORF1ab/nsp15A1-B259K259MaAgaTg11B.1.5250.000113
ORF1ab/nsp15A1-B259K259RaAgaGg11B.1.5370.02
ORF1ab/nsp15A1-B259K259RaAgaGg11B.1.5760.000907
ORF1ab/nsp15A1-B259K259KaaGaaA11B.1.5760.000907
ORF1ab/nsp15A1-B259K259KaaGaaA11B.1.5950.000261
ORF1ab/nsp15A1-B259K259RaAgaGg11B.1.5960.000087
ORF1ab/nsp15A1-B259K259EAagGag11B.1.6130.027027
ORF1ab/nsp15A1-B259K259NaaGaaT11B.1.6130.027027
ORF1ab/nsp15A1-B259K259SaAGaGT11B.1.617.10.000129
ORF1ab/nsp15A1-B259K259delAAG---11B.1.617.20.000004
ORF1ab/nsp15A1-B259K259TaAgaCg11B.1.617.20.000004
ORF1ab/nsp15A1-B259K259XAaGTaA11B.1.617.20.000004
ORF1ab/nsp15A1-B259K259NaaGaaT11B.1.6190.000871
ORF1ab/nsp15A1-B259K259delAAG---11B.1.6200.000946
ORF1ab/nsp15A1-B259K259RaAgaGg11B.1.6210.000089
ORF1ab/nsp15A1-B259K259delAAG---11B.1.621.10.000506
ORF1ab/nsp15A1-B259K259NaaGaaT11B.1.6370.000073
ORF1ab/nsp15A1-B259K259RaAgaGg11B.1.830.015385
ORF1ab/nsp15A1-B259K259NaaGaaT11B.6.60.000889
ORF1ab/nsp15A1-B259K259RaAgaGg11C.140.004329
ORF1ab/nsp15A1-B259K259RaAgaGg11C.180.002591
ORF1ab/nsp15A1-B259K259KaaGaaA11C.350.000774
ORF1ab/nsp15A1-B259K259KaaGaaA11C.370.000116
ORF1ab/nsp15A1-B259K259KaaGaaA11N.90.005952
ORF1ab/nsp15A1-B259K259RaAgaGg11P.1.120.000484
ORF1ab/nsp15A1-B259K259NaaGaaT11P.1.120.000484
ORF1ab/nsp15A1-B259K259RaAgaGg11P.1.140.000048
ORF1ab/nsp15A1-B259K259del1Aag-ag11P.1.140.000048
ORF1ab/nsp15A1-B259K259RaAgaGg11P.1.150.000232
ORF1ab/nsp15A1-B259K259RaAgaGg11P.1.160.000374
ORF1ab/nsp15A1-B259K259KaaGaaA11P.1.170.000162
ORF1ab/nsp15A1-B259K259KaaGaaA11P.1.20.001156
ORF1ab/nsp15A1-B259K259NaaGaaT11P.1.70.000319
ORF1ab/nsp15A1-B259K259KaaGaaA11Q.80.000165
ORF1ab/nsp15A1-B259K259RaAgaGg11Q.80.000165
ORF1ab/nsp15A1-B259K259NaaGaaT11R.10.00009
ORF1ab/nsp15A1-B259K259RaAgaGg11R.10.00009