CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 259

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp15A1-B	259	K259R	K6711R	nonsyn	aAg	aGg	24889	24878	0.999558	20395-20397
ORF1ab/nsp15A1-B	259	K259R	K6711R	nonsyn	aAG	aGA	24889	11	0.000441962	20395-20397
ORF1ab/nsp15A1-B	259	K259N	K6711N	nonsyn	aaG	aaT	1276	1273	0.997649	20395-20397
ORF1ab/nsp15A1-B	259	K259N	K6711N	nonsyn	aaG	aaC	1276	3	0.0023511	20395-20397
ORF1ab/nsp15A1-B	259	K259K	K6711K	syn	aaG	aaA	1175	1175	1	20395-20397
ORF1ab/nsp15A1-B	259	K259E	K6711E	nonsyn	Aag	Gag	96	95	0.989583	20395-20397
ORF1ab/nsp15A1-B	259	K259E	K6711E	nonsyn	AaG	GaA	96	1	0.0104167	20395-20397
ORF1ab/nsp15A1-B	259	K259del	K6711del	del	AAG	---	43	43	1	20395-20397
ORF1ab/nsp15A1-B	259	K259M	K6711M	nonsyn	aAg	aTg	22	22	1	20395-20397
ORF1ab/nsp15A1-B	259	K259T	K6711T	nonsyn	aAg	aCg	15	15	1	20395-20397
ORF1ab/nsp15A1-B	259	K259del1	K6711del1	del	Aag	-ag	15	11	0.733333	20395-20397
ORF1ab/nsp15A1-B	259	K259del1	K6711del1	del	aaG	aa-	15	2	0.133333	20395-20397
ORF1ab/nsp15A1-B	259	K259del1	K6711del1	del	AaG	-aT	15	1	0.0666667	20395-20397
ORF1ab/nsp15A1-B	259	K259del1	K6711del1	del	AAg	-Gg	15	1	0.0666667	20395-20397
ORF1ab/nsp15A1-B	259	K259S	K6711S	nonsyn	aAG	aGT	13	13	1	20395-20397
ORF1ab/nsp15A1-B	259	K259X	K6711X	nonsyn	Aag	Tag	6	4	0.666667	20395-20397
ORF1ab/nsp15A1-B	259	K259X	K6711X	nonsyn	AaG	TaA	6	2	0.333333	20395-20397
ORF1ab/nsp15A1-B	259	K259D	K6711D	nonsyn	AaG	GaT	2	1	0.5	20395-20397
ORF1ab/nsp15A1-B	259	K259Q	K6711Q	nonsyn	Aag	Cag	2	1	0.5	20395-20397
ORF1ab/nsp15A1-B	259	K259Q	K6711Q	nonsyn	AaG	CaA	2	1	0.5	20395-20397
ORF1ab/nsp15A1-B	259	K259D	K6711D	nonsyn	AaG	GaC	2	1	0.5	20395-20397
ORF1ab/nsp15A1-B	259	K259H	K6711H	nonsyn	AaG	CaT	1	1	1	20395-20397
ORF1ab/nsp15A1-B	259	K259A	K6711A	nonsyn	AAG	GCC	1	1	1	20395-20397
ORF1ab/nsp15A1-B	259	K259P	K6711P	nonsyn	AAg	CCg	1	1	1	20395-20397

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	24878	24889	All	0.004758
ORF1ab/nsp15A1-B	259	K259R	aAG	aGA	11	24889	All	0.000002
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	8873	8879	B.1.617.2	0.033411
ORF1ab/nsp15A1-B	259	K259R	aAG	aGA	6	8879	B.1.617.2	0.000023
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	7279	7282	B.1.617.1	0.938741
ORF1ab/nsp15A1-B	259	K259R	aAG	aGA	3	7282	B.1.617.1	0.000387
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	4135	4135	AY.35	0.963645
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1686	1686	AY.48	0.784186
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1273	1276	All	0.000243
ORF1ab/nsp15A1-B	259	K259N	aaG	aaC	3	1276	All	0.000001
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1175	1175	All	0.000225
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	592	593	B.1.1.7	0.00053
ORF1ab/nsp15A1-B	259	K259N	aaG	aaC	1	593	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	517	518	AY.16.1	0.242951
ORF1ab/nsp15A1-B	259	K259R	aAG	aGA	1	518	AY.16.1	0.00047
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	377	377	AY.4	0.000587
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	205	205	AY.44	0.001248
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	203	203	B.1	0.001859
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	181	181	AY.43	0.000802
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	176	176	AY.13	0.028332
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	140	140	B.1.575	0.042476
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	133	133	B.1.1.7	0.000119
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	127	128	AY.108	0.140022
ORF1ab/nsp15A1-B	259	K259R	aAG	aGA	1	128	AY.108	0.001103
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	125	125	B.1.582	0.061335
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	98	98	AY.23	0.006835
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	97	97	AY.103	0.000602
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	95	96	All	0.000018
ORF1ab/nsp15A1-B	259	K259E	AaG	GaA	1	96	All	0
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	84	84	B.1.617.2	0.000316
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	77	77	B.1.1.7	0.000069
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	73	73	B.1.177	0.000961
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	66	66	B.1.177	0.000869
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	64	64	B.1.429	0.001506
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	57	57	AY.59	0.030191
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	57	57	AY.92	0.016375
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	56	56	AY.4	0.000087
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	46	46	AY.25	0.000277
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	45	45	B.1.617.2	0.000169
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	44	44	AY.98	0.003476
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	44	44	B.1.2	0.000387
ORF1ab/nsp15A1-B	259	K259del	AAG	---	43	43	All	0.000008
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	43	43	AY.54	0.0041
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	41	41	B.1.306	0.234286
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	39	39	AY.66	0.041711
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	37	37	AY.43	0.000164
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	36	36	AY.19	0.041049
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	35	35	AY.39	0.000865
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	33	33	P.1	0.00052
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	31	31	AY.4	0.000048
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	31	31	AY.4.2	0.000672
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	30	30	AY.75	0.001681
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	30	30	B.1.214	0.10989
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	28	28	AY.37	0.00885
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	28	28	B.1.177.55	0.065268
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	26	26	B.1.1	0.000472
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	25	25	B.1.306	0.142857
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	24	24	B.1.1.519	0.000953
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	24	24	B.1.526	0.000564
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	23	23	AY.103	0.000143
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	23	23	AY.43	0.000102
ORF1ab/nsp15A1-B	259	K259M	aAg	aTg	22	22	All	0.000004
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	22	22	AY.102	0.000583
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	22	22	P.1	0.000347
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	21	21	AY.25	0.000126
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	21	21	AY.5.4	0.005811
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	20	20	B.1	0.000183
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	20	20	B.1.160.14	0.042373
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	20	20	B.1.427	0.00101
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	19	19	B.1.1.402	0.211111
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	18	18	AY.116	0.005162
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	18	18	AY.39	0.000445
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	18	18	B.1.36.29	0.009312
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	16	16	AY.25	0.000096
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	16	16	AY.3.1	0.001364
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	16	16	P.2	0.002986
ORF1ab/nsp15A1-B	259	K259T	aAg	aCg	15	15	All	0.000003
ORF1ab/nsp15A1-B	259	K259del1	Aag	-ag	11	15	All	0.000002
ORF1ab/nsp15A1-B	259	K259del1	aaG	aa-	2	15	All	0
ORF1ab/nsp15A1-B	259	K259del1	AaG	-aT	1	15	All	0
ORF1ab/nsp15A1-B	259	K259del1	AAg	-Gg	1	15	All	0
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	15	15	AY.47	0.000467
ORF1ab/nsp15A1-B	259	K259S	aAG	aGT	13	13	All	0.000002
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	13	13	AY.29.1	0.002867
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	13	13	AY.3	0.000129
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	13	13	AY.61	0.001362
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	13	13	AY.68	0.003559
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	13	13	B.1	0.000119
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	13	13	B.1.1	0.000236
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	12	12	AY.29	0.000189
ORF1ab/nsp15A1-B	259	K259S	aAG	aGT	12	12	B.1.617.2	0.000045
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	11	11	AY.20	0.000428
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	11	11	AY.25	0.000066
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	11	11	AY.62	0.004793
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	11	11	B.1.2	0.000097
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	11	11	B.1.243	0.000765
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	11	11	B.1.351.2	0.003328
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	10	10	AY.4.2.1	0.00149
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	10	10	AY.52	0.008143
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	10	10	AY.55	0.009174
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	10	10	P.1	0.000158
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	9	9	AY.102	0.000239
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	9	9	AY.121	0.001218
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	9	9	AY.20	0.00035
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	9	9	AY.4.2	0.000195
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	9	9	AY.44	0.000055
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	9	9	AY.44	0.000055
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	9	9	AY.5	0.000186
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	9	9	B.1.1.297	0.020134
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	9	9	B.1.429	0.000212
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	9	9	C.36	0.008197
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	9	9	P.1.14	0.00043
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	8	8	AY.118	0.000501
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	8	8	AY.24	0.003448
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	8	8	AY.77	0.009019
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	8	8	AY.9.2	0.000294
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	8	8	B.1.177.81	0.001515
ORF1ab/nsp15A1-B	259	K259M	aAg	aTg	8	8	B.1.629	0.106667
ORF1ab/nsp15A1-B	259	K259M	aAg	aTg	8	8	P.1	0.000126
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	8	8	P.1.14	0.000382
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	8	8	P.1.7	0.002554
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	7	7	AY.87	0.005828
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	7	7	B.1.1.373	0.166667
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	6	7	B.1.2	0.000053
ORF1ab/nsp15A1-B	259	K259N	aaG	aaC	1	7	B.1.2	0.000009
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	7	7	P.1	0.00011
ORF1ab/nsp15A1-B	259	K259del	AAG	---	6	6		0.333333
ORF1ab/nsp15A1-B	259	K259X	Aag	Tag	4	6	All	0.000001
ORF1ab/nsp15A1-B	259	K259X	AaG	TaA	2	6	All	0
ORF1ab/nsp15A1-B	259	K259del	AAG	---	6	6	AY.59	0.003178
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	6	6	AY.64	0.003571
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	6	6	AY.98.1	0.000291
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	6	6	B	0.000767
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	6	6	B.1.1.317	0.00247
ORF1ab/nsp15A1-B	259	K259del	AAG	---	6	6	B.1.1.7	0.000005
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	6	6	B.1.1.7	0.000005
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	6	6	B.1.177	0.000079
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	6	6	B.1.497	0.001889
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	5	5	AY.100	0.00023
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	5	5	AY.118	0.000313
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	5	5	AY.4.5	0.000537
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	5	5	AY.42	0.000201
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	5	5	AY.45	0.000608
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	5	5	B.1.1.220	0.009294
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	5	5	B.1.160	0.000156
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	5	5	B.1.160	0.000156
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	5	5	B.1.351	0.000149
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	5	5	B.1.36.17	0.00247
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	5	5	B.1.565	0.004052
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	4	4	A.3	0.008386
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	4	4	AY.100	0.000184
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	4	4	AY.102	0.000106
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	4	4	AY.109	0.002959
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	4	4	AY.117	0.000338
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	4	4	AY.12	0.001264
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	4	4	AY.3	0.00004
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	4	4	AY.39.1	0.000158
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	4	4	AY.5	0.000083
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	4	4	AY.56	0.006421
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	4	4	AY.88	0.003537
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	4	4	B.1.1	0.000073
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	4	4	B.1.1.222	0.000816
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	4	4	B.1.243	0.000278
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	4	4	B.1.448	0.010499
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	4	4	B.1.596	0.000349
ORF1ab/nsp15A1-B	259	K259del1	Aag	-ag	3	4	B.1.617.2	0.000011
ORF1ab/nsp15A1-B	259	K259del1	AAg	-Gg	1	4	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	4	4	B.1.621	0.000354
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	4	4	P.1.15	0.000929
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	3	3	A	0.001161
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	3	3	AY.106	0.001005
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	3	3	AY.119	0.000106
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	3	3	AY.120	0.000112
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	3	3	AY.121	0.000406
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	3	3	AY.22	0.006276
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	3	3	AY.26	0.000085
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	3	3	AY.39	0.000074
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	3	3	AY.4.2	0.000065
ORF1ab/nsp15A1-B	259	K259del	AAG	---	3	3	AY.43	0.000013
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	3	3	AY.46	0.000312
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	3	3	AY.46	0.000312
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	3	3	AY.53	0.000863
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	3	3	AY.71	0.001425
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	3	3	AY.78	0.004622
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	3	3	AY.9	0.000203
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	3	3	AY.9.2	0.00011
ORF1ab/nsp15A1-B	259	K259del1	Aag	-ag	2	3	B.1.1	0.000036
ORF1ab/nsp15A1-B	259	K259del1	aaG	aa-	1	3	B.1.1	0.000018
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	3	3	B.1.1.214	0.000166
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	3	3	B.1.1.28	0.000934
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	3	3	B.1.1.347	0.054545
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	3	3	B.1.1.434	0.001046
ORF1ab/nsp15A1-B	259	K259T	aAg	aCg	3	3	B.1.1.7	0.000003
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	3	3	B.1.160	0.000094
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	3	3	B.1.177.73	0.001699
ORF1ab/nsp15A1-B	259	K259del	AAG	---	3	3	B.1.2	0.000026
ORF1ab/nsp15A1-B	259	K259del	AAG	---	3	3	B.1.258	0.0002
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	3	3	B.1.351	0.000089
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	3	3	B.1.36.18	0.001261
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	3	3	B.1.362	0.004622
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	3	3	B.1.470	0.004213
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	3	3	B.1.551	0.003871
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	3	3	B.1.596	0.000261
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	3	3	B.1.612	0.007958
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	3	3	P.1.15	0.000697
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	3	3	P.2	0.00056
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	2	2		0.111111
ORF1ab/nsp15A1-B	259	K259D	AaG	GaC	1	2	All	0
ORF1ab/nsp15A1-B	259	K259D	AaG	GaT	1	2	All	0
ORF1ab/nsp15A1-B	259	K259Q	Aag	Cag	1	2	All	0
ORF1ab/nsp15A1-B	259	K259Q	AaG	CaA	1	2	All	0
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	2	2	AY.10	0.00106
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	2	2	AY.101	0.000981
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	2	2	AY.103	0.000012
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	2	2	AY.106	0.00067
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	2	2	AY.106	0.00067
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	2	2	AY.11	0.002677
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	2	2	AY.113	0.000285
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	2	2	AY.118	0.000125
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	2	2	AY.119	0.000071
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	2	2	AY.120.2.1	0.000997
ORF1ab/nsp15A1-B	259	K259del	AAG	---	2	2	AY.25	0.000012
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	2	2	AY.29	0.000032
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	2	2	AY.3	0.00002
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	2	2	AY.34.1	0.00102
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	2	2	AY.4	0.000003
ORF1ab/nsp15A1-B	259	K259T	aAg	aCg	2	2	AY.44	0.000012
ORF1ab/nsp15A1-B	259	K259X	Aag	Tag	2	2	AY.44	0.000012
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	2	2	AY.5.3	0.000675
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	2	2	AY.6	0.000082
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	2	2	AY.67	0.000929
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	2	2	AY.70	0.000417
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	2	2	AY.74	0.000231
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	2	2	AY.82	0.002714
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	2	2	AY.9	0.000135
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	2	2	AY.98	0.000158
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	2	2	AY.98	0.000158
ORF1ab/nsp15A1-B	259	K259X	Aag	Tag	1	2	B.1	0.000009
ORF1ab/nsp15A1-B	259	K259X	AaG	TaA	1	2	B.1	0.000009
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	2	2	B.1.1.176	0.000879
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	2	2	B.1.1.194	0.009901
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	2	2	B.1.1.214	0.000111
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	2	2	B.1.1.306	0.000877
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	2	2	B.1.1.306	0.000877
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	2	2	B.1.1.318	0.000604
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	2	2	B.1.1.354	0.008772
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	2	2	B.1.1.519	0.000079
ORF1ab/nsp15A1-B	259	K259M	aAg	aTg	2	2	B.1.1.7	0.000002
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	2	2	B.1.157	0.00597
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	2	2	B.1.177	0.000026
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	2	2	B.1.258.3	0.00335
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	2	2	B.1.351	0.000059
ORF1ab/nsp15A1-B	259	K259E	AaG	GaA	1	2	B.1.351	0.00003
ORF1ab/nsp15A1-B	259	K259Q	AaG	CaA	1	2	B.1.351	0.00003
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	1	2	B.1.351	0.00003
ORF1ab/nsp15A1-B	259	K259Q	Aag	Cag	1	2	B.1.351	0.00003
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	2	2	B.1.36	0.000292
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	2	2	B.1.36	0.000292
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	2	2	B.1.369	0.00057
ORF1ab/nsp15A1-B	259	K259T	aAg	aCg	2	2	B.1.423	0.020408
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	2	2	B.1.428	0.002041
ORF1ab/nsp15A1-B	259	K259del	AAG	---	2	2	B.1.517	0.000854
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	2	2	B.1.561	0.000794
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	2	2	B.1.564	0.000852
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	2	2	B.1.568	0.002222
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	2	2	B.1.595	0.000522
ORF1ab/nsp15A1-B	259	K259del1	Aag	-ag	2	2	B.1.617.1	0.000258
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	2	2	B.1.617.2	0.000008
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	2	2	B.1.637	0.000146
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	2	2	C.37	0.000232
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	2	2	D.2	0.00015
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	2	2	D.2	0.00015
ORF1ab/nsp15A1-B	259	K259T	aAg	aCg	2	2	P.1	0.000032
ORF1ab/nsp15A1-B	259	K259del	AAG	---	2	2	P.1.15	0.000465
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	2	2	P.1.7	0.000639
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	2	2	Q.8	0.00033
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	2	2	R.1	0.00018
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	A	0.000387
ORF1ab/nsp15A1-B	259	K259del1	Aag	-ag	1	1	A	0.000387
ORF1ab/nsp15A1-B	259	K259del	AAG	---	1	1	A.2.4	0.003367
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	A.23.1	0.000704
ORF1ab/nsp15A1-B	259	K259M	aAg	aTg	1	1	AD.2	0.000219
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	AE.3	0.032258
ORF1ab/nsp15A1-B	259	K259H	AaG	CaT	1	1	All	0
ORF1ab/nsp15A1-B	259	K259A	AAG	GCC	1	1	All	0
ORF1ab/nsp15A1-B	259	K259P	AAg	CCg	1	1	All	0
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	1	1	AY.100	0.000046
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	1	1	AY.102	0.000027
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	1	1	AY.103	0.000006
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	AY.110	0.000113
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	AY.111	0.000183
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	AY.117	0.000085
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	AY.119	0.000035
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	AY.12	0.000316
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	AY.120.1	0.000321
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	1	1	AY.120.1	0.000321
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	AY.14	0.000088
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	AY.16	0.00038
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	AY.16	0.00038
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	AY.16.1	0.00047
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	AY.20	0.000039
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	AY.23	0.00007
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	AY.24	0.000431
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	AY.26	0.000028
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	AY.27	0.000065
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	AY.28	0.00189
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	AY.29	0.000016
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	1	1	AY.3	0.00001
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	AY.3.1	0.000085
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	AY.32	0.000532
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	AY.33	0.000067
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	AY.33	0.000067
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	AY.37	0.000316
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	AY.38	0.000499
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	AY.38	0.000499
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	1	1	AY.39	0.000025
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	AY.39.1	0.00004
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	AY.39.1	0.00004
ORF1ab/nsp15A1-B	259	K259del	AAG	---	1	1	AY.4	0.000002
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	AY.4.1	0.000737
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	AY.4.2	0.000022
ORF1ab/nsp15A1-B	259	K259del1	Aag	-ag	1	1	AY.4.2.1	0.000149
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	AY.41	0.000294
ORF1ab/nsp15A1-B	259	K259N	aaG	aaC	1	1	AY.41	0.000294
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	AY.42	0.00004
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	AY.45	0.000122
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	AY.46.5	0.000198
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	259	K259del1	AaG	-aT	1	1	AY.48	0.000465
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	AY.5	0.000021
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	AY.5.3	0.000337
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	AY.5.4	0.000277
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	AY.51	0.000909
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	AY.54	0.000095
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	AY.55	0.000917
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	AY.58	0.000907
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	AY.58	0.000907
ORF1ab/nsp15A1-B	259	K259M	aAg	aTg	1	1	AY.59	0.00053
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	AY.6	0.000041
ORF1ab/nsp15A1-B	259	K259T	aAg	aCg	1	1	AY.61	0.000105
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	AY.7.1	0.000113
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	AY.71	0.000475
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	AY.75.1	0.00018
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	AY.75.1	0.00018
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	AY.84	0.000437
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	AY.85	0.000427
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	AY.85	0.000427
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	AY.9.1	0.000084
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	AY.93	0.000273
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	AY.94	0.000443
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	AY.95	0.000761
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	AY.98.1	0.000048
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	AY.99	0.001049
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	AY.99.2	0.000092
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	AY.99.2	0.000092
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	AZ.1	0.000867
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	AZ.3	0.00152
ORF1ab/nsp15A1-B	259	K259D	AaG	GaC	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	259	K259del	AAG	---	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	259	K259T	aAg	aCg	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	B.1.1.174	0.003378
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	B.1.1.201	0.02439
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	B.1.1.219	0.005
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	B.1.1.219	0.005
ORF1ab/nsp15A1-B	259	K259del	AAG	---	1	1	B.1.1.282	0.011628
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	B.1.1.294	0.001266
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	B.1.1.301	0.001179
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	B.1.1.304	0.002809
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	B.1.1.306	0.000438
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	B.1.1.309	0.005848
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	B.1.1.326	0.001761
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	B.1.1.33	0.000421
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	B.1.1.344	0.010753
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	1	1	B.1.1.353	0.020833
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	B.1.1.37	0.000193
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	B.1.1.47	0.005348
ORF1ab/nsp15A1-B	259	K259X	Aag	Tag	1	1	B.1.1.519	0.00004
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	B.1.1.519	0.00004
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	B.1.1.63	0.000386
ORF1ab/nsp15A1-B	259	K259A	AAG	GCC	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	259	K259del	AAG	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	B.1.110	0.004525
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	B.1.126	0.001276
ORF1ab/nsp15A1-B	259	K259M	aAg	aTg	1	1	B.1.160	0.000031
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	B.1.160.29	0.004219
ORF1ab/nsp15A1-B	259	K259T	aAg	aCg	1	1	B.1.177	0.000013
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	B.1.177.15	0.000631
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	B.1.177.19	0.001431
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	B.1.177.21	0.000076
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	B.1.177.24	0.001295
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	B.1.177.31	0.011494
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	B.1.177.33	0.001645
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	B.1.177.4	0.000211
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	B.1.177.4	0.000211
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	B.1.177.41	0.0025
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	1	1	B.1.177.54	0.000606
ORF1ab/nsp15A1-B	259	K259del	AAG	---	1	1	B.1.177.68	0.015152
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	B.1.177.81	0.000189
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	B.1.177.9	0.001332
ORF1ab/nsp15A1-B	259	K259P	AAg	CCg	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	259	K259T	aAg	aCg	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	B.1.221	0.000071
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	B.1.221	0.000071
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	B.1.221	0.000071
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	1	1	B.1.243	0.00007
ORF1ab/nsp15A1-B	259	K259del1	Aag	-ag	1	1	B.1.247	0.014925
ORF1ab/nsp15A1-B	259	K259T	aAg	aCg	1	1	B.1.324	0.001605
ORF1ab/nsp15A1-B	259	K259D	AaG	GaT	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	259	K259H	AaG	CaT	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	B.1.351.2	0.000303
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	B.1.36	0.000146
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	B.1.361	0.001289
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	B.1.369	0.000285
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	B.1.371	0.001122
ORF1ab/nsp15A1-B	259	K259del	AAG	---	1	1	B.1.375	0.00082
ORF1ab/nsp15A1-B	259	K259del1	aaG	aa-	1	1	B.1.409	0.000781
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	B.1.416	0.001269
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	B.1.425	0.002994
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	B.1.438.1	0.000107
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	B.1.456	0.003268
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	1	1	B.1.466.2	0.000391
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	B.1.466.2	0.000391
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	B.1.517	0.000427
ORF1ab/nsp15A1-B	259	K259M	aAg	aTg	1	1	B.1.525	0.000113
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	B.1.537	0.02
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	B.1.576	0.000907
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	B.1.576	0.000907
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	B.1.595	0.000261
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	259	K259E	Aag	Gag	1	1	B.1.613	0.027027
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	B.1.613	0.027027
ORF1ab/nsp15A1-B	259	K259S	aAG	aGT	1	1	B.1.617.1	0.000129
ORF1ab/nsp15A1-B	259	K259del	AAG	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	259	K259T	aAg	aCg	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	259	K259X	AaG	TaA	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	B.1.619	0.000871
ORF1ab/nsp15A1-B	259	K259del	AAG	---	1	1	B.1.620	0.000946
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	B.1.621	0.000089
ORF1ab/nsp15A1-B	259	K259del	AAG	---	1	1	B.1.621.1	0.000506
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	B.1.637	0.000073
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	B.1.83	0.015385
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	B.6.6	0.000889
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	C.14	0.004329
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	C.18	0.002591
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	C.35	0.000774
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	C.37	0.000116
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	N.9	0.005952
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	P.1.12	0.000484
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	P.1.12	0.000484
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	P.1.14	0.000048
ORF1ab/nsp15A1-B	259	K259del1	Aag	-ag	1	1	P.1.14	0.000048
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	P.1.15	0.000232
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	P.1.16	0.000374
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	P.1.17	0.000162
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	P.1.2	0.001156
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	P.1.7	0.000319
ORF1ab/nsp15A1-B	259	K259K	aaG	aaA	1	1	Q.8	0.000165
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	Q.8	0.000165
ORF1ab/nsp15A1-B	259	K259N	aaG	aaT	1	1	R.1	0.00009
ORF1ab/nsp15A1-B	259	K259R	aAg	aGg	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.