CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 257

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp15A1-B	257	R257C	R6709C	nonsyn	Cgt	Tgt	4245	4243	0.999529	20389-20391
ORF1ab/nsp15A1-B	257	R257C	R6709C	nonsyn	CgT	TgC	4245	2	0.000471143	20389-20391
ORF1ab/nsp15A1-B	257	R257R	R6709R	syn	cgT	cgG	1775	1568	0.88338	20389-20391
ORF1ab/nsp15A1-B	257	R257R	R6709R	syn	cgT	cgC	1775	200	0.112676	20389-20391
ORF1ab/nsp15A1-B	257	R257R	R6709R	syn	cgT	cgA	1775	5	0.0028169	20389-20391
ORF1ab/nsp15A1-B	257	R257R	R6709R	syn	CgT	AgG	1775	2	0.00112676	20389-20391
ORF1ab/nsp15A1-B	257	R257L	R6709L	nonsyn	cGt	cTt	379	378	0.997361	20389-20391
ORF1ab/nsp15A1-B	257	R257L	R6709L	nonsyn	cGT	cTA	379	1	0.00263852	20389-20391
ORF1ab/nsp15A1-B	257	R257S	R6709S	nonsyn	Cgt	Agt	105	105	1	20389-20391
ORF1ab/nsp15A1-B	257	R257H	R6709H	nonsyn	cGt	cAt	82	82	1	20389-20391
ORF1ab/nsp15A1-B	257	R257G	R6709G	nonsyn	Cgt	Ggt	80	80	1	20389-20391
ORF1ab/nsp15A1-B	257	R257del	R6709del	del	CGT	---	48	48	1	20389-20391
ORF1ab/nsp15A1-B	257	R257P	R6709P	nonsyn	cGt	cCt	19	18	0.947368	20389-20391
ORF1ab/nsp15A1-B	257	R257P	R6709P	nonsyn	cGT	cCG	19	1	0.0526316	20389-20391
ORF1ab/nsp15A1-B	257	R257del1	R6709del1	del	cgT	cg-	15	13	0.866667	20389-20391
ORF1ab/nsp15A1-B	257	R257del1	R6709del1	del	Cgt	-gt	15	1	0.0666667	20389-20391
ORF1ab/nsp15A1-B	257	R257del1	R6709del1	del	CgT	-gN	15	1	0.0666667	20389-20391
ORF1ab/nsp15A1-B	257	R257F	R6709F	nonsyn	CGt	TTt	2	2	1	20389-20391
ORF1ab/nsp15A1-B	257	R257T	R6709T	nonsyn	CGt	ACt	2	1	0.5	20389-20391
ORF1ab/nsp15A1-B	257	R257T	R6709T	nonsyn	CGT	ACG	2	1	0.5	20389-20391
ORF1ab/nsp15A1-B	257	R257Y	R6709Y	nonsyn	CGt	TAt	1	1	1	20389-20391
ORF1ab/nsp15A1-B	257	R257E	R6709E	nonsyn	CGT	GAA	1	1	1	20389-20391

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	4243	4245	All	0.000812
ORF1ab/nsp15A1-B	257	R257C	CgT	TgC	2	4245	All	0
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1568	1775	All	0.0003
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	200	1775	All	0.000038
ORF1ab/nsp15A1-B	257	R257R	cgT	cgA	5	1775	All	0.000001
ORF1ab/nsp15A1-B	257	R257R	CgT	AgG	2	1775	All	0
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1420	1424	AY.59	0.752119
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	4	1424	AY.59	0.002119
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	778	778	AU.1	0.98481
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	601	601	AY.103	0.003732
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	562	562	B.1.617.2	0.002116
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	378	379	All	0.000072
ORF1ab/nsp15A1-B	257	R257L	cGT	cTA	1	379	All	0
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	241	241	AY.43	0.001068
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	189	189	AY.4	0.000294
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	164	164	AY.44	0.000998
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	138	138	B.1.1.7	0.000124
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	108	108	AY.5	0.00223
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	107	107	B.1.221	0.007601
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	75	106	B.1.1.7	0.000067
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	30	106	B.1.1.7	0.000027
ORF1ab/nsp15A1-B	257	R257R	cgT	cgA	1	106	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	257	R257S	Cgt	Agt	105	105	All	0.00002
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	105	105	B.1	0.000962
ORF1ab/nsp15A1-B	257	R257S	Cgt	Agt	85	85	AY.44	0.000517
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	82	82	All	0.000016
ORF1ab/nsp15A1-B	257	R257G	Cgt	Ggt	80	80	All	0.000015
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	72	72	AY.3	0.000716
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	71	71	B.1.258	0.004725
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	70	70	AY.4	0.000109
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	63	63	AY.4.2	0.001366
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	58	58	B.1.1.338	1
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	53	53	B.1.2	0.000467
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	52	52	A.23.1	0.03662
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	51	51	AY.25	0.000307
ORF1ab/nsp15A1-B	257	R257del	CGT	---	48	48	All	0.000009
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	47	47	B.1.617.2	0.000177
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	45	45	AY.33	0.003005
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	41	41	B.1.1	0.000744
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	41	41	B.1.160.8	0.052835
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	34	39	AY.4	0.000053
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	5	39	AY.4	0.000008
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	39	39	AY.47	0.001213
ORF1ab/nsp15A1-B	257	R257G	Cgt	Ggt	32	32	AY.102	0.000848
ORF1ab/nsp15A1-B	257	R257G	Cgt	Ggt	28	28	B.1.617.2	0.000105
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	27	27	B.1.466.2	0.010563
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	25	25	B.1.1.519	0.000993
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	23	23	AY.103	0.000143
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	22	22	AY.20	0.000855
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	22	22	AY.34	0.002133
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	21	21	AY.12	0.006637
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	21	21	AY.75	0.001176
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	20	21	B.1.429	0.000471
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	1	21	B.1.429	0.000024
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	20	20	AY.102	0.00053
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	20	20	AY.44	0.000122
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	20	20	AY.46.6	0.001444
ORF1ab/nsp15A1-B	257	R257P	cGt	cCt	18	19	All	0.000003
ORF1ab/nsp15A1-B	257	R257P	cGT	cCG	1	19	All	0
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	19	19	B.1.1.369	0.008478
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	17	17	B.1.177	0.000224
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	16	16	A.2.4	0.053872
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	16	16	AY.114	0.003698
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	16	16	AY.39	0.000395
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	16	16	AY.43	0.000071
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	16	16	B.1.561	0.006352
ORF1ab/nsp15A1-B	257	R257del1	cgT	cg-	13	15	All	0.000002
ORF1ab/nsp15A1-B	257	R257del1	CgT	-gN	1	15	All	0
ORF1ab/nsp15A1-B	257	R257del1	Cgt	-gt	1	15	All	0
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	14	14	AY.26	0.000396
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	9	14	AY.33	0.000601
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	5	14	AY.33	0.000334
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	13	13	AY.26	0.000368
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	9	13	B.1	0.000082
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	3	13	B.1	0.000027
ORF1ab/nsp15A1-B	257	R257R	CgT	AgG	1	13	B.1	0.000009
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	13	13	B.1.1.222	0.002652
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	12	12	AY.25	0.000072
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	8	12	B.1.1	0.000145
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	4	12	B.1.1	0.000073
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	12	12	B.1.1.7	0.000011
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	12	12	B.1.199	0.049587
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	10	11	AY.23	0.000697
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	11	AY.23	0.00007
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	8	11	AY.43	0.000035
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	3	11	AY.43	0.000013
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	11	11	AY.9	0.000744
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	11	11	B.1.1.7	0.00001
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	11	11	B.1.160	0.000343
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	10	10	AY.3	0.000099
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	9	9	AY.120	0.000335
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	9	9	AY.46	0.000937
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	9	9	B.1.243	0.000626
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	9	9	B.1.351	0.000268
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	9	9	B.1.351	0.000268
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	8	8	AY.29	0.000126
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	8	8	AY.3.1	0.000682
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	8	8	AY.4	0.000012
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	8	8	AY.42	0.000322
ORF1ab/nsp15A1-B	257	R257del	CGT	---	8	8	AY.59	0.004237
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	8	8	B.1.1.33	0.003367
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	8	8	B.1.429	0.000188
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	7	7	AY.102	0.000186
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	7	7	AY.29	0.00011
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	7	7	AY.36	0.001037
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	7	7	AY.46.4	0.001152
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	7	7	AY.54	0.000667
ORF1ab/nsp15A1-B	257	R257P	cGt	cCt	6	7	B.1	0.000055
ORF1ab/nsp15A1-B	257	R257P	cGT	cCG	1	7	B.1	0.000009
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	7	7	B.1.1.153	0.007667
ORF1ab/nsp15A1-B	257	R257del	CGT	---	6	6		0.333333
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	6	6	AY.23	0.000418
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	6	6	AY.44	0.000037
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	6	6	AY.98.1	0.000291
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	6	6	B.1.177.57	0.001686
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	6	6	B.1.2	0.000053
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	6	6	B.1.436	0.006173
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	6	6	B.1.459	0.02449
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	6	6	Q.4	0.002729
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	5	5	AY.4.5	0.000537
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	5	5	AY.45	0.000608
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	5	5	AY.46.2	0.003177
ORF1ab/nsp15A1-B	257	R257G	Cgt	Ggt	5	5	AY.47	0.000156
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	5	5	AY.6	0.000206
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	5	5	B.1	0.000046
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	5	5	B.1.2	0.000044
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	5	5	B.1.218	0.025773
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	5	5	B.1.429	0.000118
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	3	5	P.1	0.000047
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	2	5	P.1	0.000032
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	4	4	AY.113	0.00057
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	4	4	AY.119	0.000141
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	4	4	AY.19	0.004561
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	4	4	AY.42	0.000161
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	4	4	AY.5	0.000083
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	4	4	AY.69	0.000747
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	4	4	AY.9	0.00027
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	4	4	AY.9.2	0.000147
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	4	4	AY.98.1	0.000194
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	4	4	AY.99.2	0.000369
ORF1ab/nsp15A1-B	257	R257S	Cgt	Agt	4	4	B.1	0.000037
ORF1ab/nsp15A1-B	257	R257del1	cgT	cg-	4	4	B.1	0.000037
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	4	4	B.1.1	0.000073
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	4	4	B.1.1.214	0.000222
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	4	4	B.1.1.430	0.166667
ORF1ab/nsp15A1-B	257	R257del	CGT	---	4	4	B.1.1.7	0.000004
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	4	4	B.1.177.16	0.002658
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	4	4	B.1.177.33	0.006579
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	4	4	B.1.177.77	0.002905
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	4	4	B.1.260	0.013378
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	4	4	C.37	0.000464
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	4	4	P.1	0.000063
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	4	4	P.1.14	0.000191
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	4	4	R.1	0.00036
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	3	3	AY.100	0.000138
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	3	3	AY.106	0.001005
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	3	3	AY.113	0.000427
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	3	3	AY.117	0.000254
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	3	3	AY.118	0.000188
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	3	3	AY.119	0.000106
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	3	3	AY.23	0.000209
ORF1ab/nsp15A1-B	257	R257del	CGT	---	3	3	AY.25	0.000018
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	3	3	AY.25	0.000018
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	3	3	AY.29	0.000047
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	3	3	AY.33	0.0002
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	3	3	AY.39	0.000074
ORF1ab/nsp15A1-B	257	R257P	cGt	cCt	3	3	AY.43	0.000013
ORF1ab/nsp15A1-B	257	R257del	CGT	---	3	3	AY.43	0.000013
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	3	3	AY.47	0.000093
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	3	3	AY.5	0.000062
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	3	3	AY.5.3	0.001012
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	3	3	AY.67	0.001393
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	3	3	AY.82	0.004071
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	3	3	AY.9	0.000203
ORF1ab/nsp15A1-B	257	R257del	CGT	---	3	3	AY.9.2	0.00011
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	3	3	AY.92	0.000862
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	3	3	B.1.1.1	0.00098
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	3	3	B.1.1.189	0.004539
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	3	3	B.1.111	0.003525
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	3	3	B.1.139	0.002199
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	3	3	B.1.177.56	0.002003
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	3	3	B.1.177.81	0.000568
ORF1ab/nsp15A1-B	257	R257del	CGT	---	3	3	B.1.2	0.000026
ORF1ab/nsp15A1-B	257	R257del1	cgT	cg-	2	3	B.1.2	0.000018
ORF1ab/nsp15A1-B	257	R257del1	Cgt	-gt	1	3	B.1.2	0.000009
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	3	3	B.1.234	0.000396
ORF1ab/nsp15A1-B	257	R257del	CGT	---	3	3	B.1.258	0.0002
ORF1ab/nsp15A1-B	257	R257S	Cgt	Agt	3	3	B.1.429	0.000071
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	3	3	B.1.462	0.021739
ORF1ab/nsp15A1-B	257	R257S	Cgt	Agt	3	3	B.1.466.2	0.001174
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	3	3	B.1.596	0.000261
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	3	3	B.1.617.2	0.000011
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	2	3	C.37	0.000232
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	3	C.37	0.000116
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	3	3	D.2	0.000225
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	3	3	P.1.7	0.000958
ORF1ab/nsp15A1-B	257	R257C	CgT	TgC	2	2		0.111111
ORF1ab/nsp15A1-B	257	R257R	CgT	AgG	1	2		0.055556
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	2		0.055556
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	2	2	A.1	0.000564
ORF1ab/nsp15A1-B	257	R257F	CGt	TTt	2	2	All	0
ORF1ab/nsp15A1-B	257	R257T	CGT	ACG	1	2	All	0
ORF1ab/nsp15A1-B	257	R257T	CGt	ACt	1	2	All	0
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	1	2	AY.103	0.000006
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	2	AY.103	0.000006
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	2	2	AY.116	0.000574
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	2	2	AY.120	0.000074
ORF1ab/nsp15A1-B	257	R257del1	cgT	cg-	2	2	AY.120.1	0.000642
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	AY.121	0.000271
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	AY.19	0.002281
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	2	2	AY.20	0.000078
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	AY.23.1	0.000835
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	2	2	AY.39	0.000049
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	2	2	AY.39	0.000049
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	AY.39.1	0.000079
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	AY.4.5	0.000215
ORF1ab/nsp15A1-B	257	R257G	Cgt	Ggt	2	2	AY.43	0.000009
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	2	2	AY.43	0.000009
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	2	2	AY.44	0.000012
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	AY.5.4	0.000553
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	AY.55	0.001835
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	AY.74	0.000231
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	AY.85	0.000854
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	AY.86	0.00166
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	AY.9.1	0.000167
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	2	2	AY.93	0.000546
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	2	2	AY.95	0.001522
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	2	2	AY.99.2	0.000184
ORF1ab/nsp15A1-B	257	R257T	CGT	ACG	1	2	B.1	0.000009
ORF1ab/nsp15A1-B	257	R257T	CGt	ACt	1	2	B.1	0.000009
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	2	2	B.1.1	0.000036
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	2	2	B.1.1.214	0.000111
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	B.1.1.220	0.003717
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	2	2	B.1.1.28	0.000622
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	B.1.1.28	0.000622
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	B.1.1.297	0.004474
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	2	2	B.1.1.304	0.005618
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	B.1.1.368	0.006173
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	B.1.1.39	0.001019
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	B.1.1.416	0.00181
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	B.1.1.99	0.047619
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	2	2	B.1.177	0.000026
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	B.1.177.7	0.00033
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	B.1.232	0.001075
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	2	2	B.1.243	0.000139
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	2	2	B.1.36.17	0.000988
ORF1ab/nsp15A1-B	257	R257R	cgT	cgA	1	2	B.1.369	0.000285
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	2	B.1.369	0.000285
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	B.1.396	0.001411
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	B.1.409	0.001563
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	B.1.429	0.000047
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	B.1.438.1	0.000215
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	B.1.517	0.000854
ORF1ab/nsp15A1-B	257	R257del	CGT	---	2	2	B.1.517	0.000854
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	2	2	B.1.526	0.000047
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	B.1.564	0.000852
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	B.1.595	0.000522
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	2	2	B.1.596	0.000174
ORF1ab/nsp15A1-B	257	R257S	Cgt	Agt	2	2	B.1.596	0.000174
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	B.1.609	0.000959
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	2	2	B.1.617.2	0.000008
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	B.1.618	0.008065
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	B.1.9.5	0.011364
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	B.40	0.000729
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	2	2	N.4	0.008511
ORF1ab/nsp15A1-B	257	R257del	CGT	---	2	2	P.1.15	0.000465
ORF1ab/nsp15A1-B	257	R257S	Cgt	Agt	1	1		0.055556
ORF1ab/nsp15A1-B	257	R257P	cGt	cCt	1	1	A	0.000387
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	A	0.000387
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	A.1	0.000282
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	A.19	0.009434
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	A.2	0.000662
ORF1ab/nsp15A1-B	257	R257del	CGT	---	1	1	A.2.4	0.003367
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	A.2.5	0.000499
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	A.3	0.002096
ORF1ab/nsp15A1-B	257	R257Y	CGt	TAt	1	1	All	0
ORF1ab/nsp15A1-B	257	R257E	CGT	GAA	1	1	All	0
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	1	AU.2	0.002421
ORF1ab/nsp15A1-B	257	R257G	Cgt	Ggt	1	1	AY.1	0.000396
ORF1ab/nsp15A1-B	257	R257G	Cgt	Ggt	1	1	AY.10	0.00053
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	1	AY.10	0.00053
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	AY.100	0.000046
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.101	0.00049
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	1	1	AY.103	0.000006
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	1	1	AY.107	0.000466
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.116	0.000287
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	AY.117	0.000085
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	AY.118	0.000063
ORF1ab/nsp15A1-B	257	R257del1	cgT	cg-	1	1	AY.118	0.000063
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	1	AY.119	0.000035
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	1	1	AY.120.1	0.000321
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	AY.121	0.000135
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.13	0.000161
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	AY.13	0.000161
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.14	0.000088
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.16	0.00038
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.16.1	0.00047
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	AY.17	0.008197
ORF1ab/nsp15A1-B	257	R257S	Cgt	Agt	1	1	AY.20	0.000039
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.21	0.001898
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	1	1	AY.23	0.00007
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	1	1	AY.24	0.000431
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.24	0.000431
ORF1ab/nsp15A1-B	257	R257del1	cgT	cg-	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	1	1	AY.26	0.000028
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.27	0.000065
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	AY.27	0.000065
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	1	AY.3	0.00001
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	AY.3.1	0.000085
ORF1ab/nsp15A1-B	257	R257P	cGt	cCt	1	1	AY.33	0.000067
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	AY.34	0.000097
ORF1ab/nsp15A1-B	257	R257G	Cgt	Ggt	1	1	AY.34.1	0.00051
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.35	0.000233
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.37	0.000316
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.38	0.000499
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	AY.38	0.000499
ORF1ab/nsp15A1-B	257	R257G	Cgt	Ggt	1	1	AY.39	0.000025
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	AY.39.1	0.00004
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	AY.39.1.1	0.000725
ORF1ab/nsp15A1-B	257	R257S	Cgt	Agt	1	1	AY.4	0.000002
ORF1ab/nsp15A1-B	257	R257del	CGT	---	1	1	AY.4	0.000002
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	AY.4.2	0.000022
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	1	AY.42	0.00004
ORF1ab/nsp15A1-B	257	R257P	cGt	cCt	1	1	AY.42	0.00004
ORF1ab/nsp15A1-B	257	R257G	Cgt	Ggt	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	257	R257del1	cgT	cg-	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	AY.46	0.000104
ORF1ab/nsp15A1-B	257	R257G	Cgt	Ggt	1	1	AY.46	0.000104
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.46.1	0.001027
ORF1ab/nsp15A1-B	257	R257G	Cgt	Ggt	1	1	AY.46.2	0.000635
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	AY.46.4	0.000165
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.46.5	0.000198
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	AY.46.6	0.000072
ORF1ab/nsp15A1-B	257	R257P	cGt	cCt	1	1	AY.52	0.000814
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.52	0.000814
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.58	0.000907
ORF1ab/nsp15A1-B	257	R257L	cGT	cTA	1	1	AY.59	0.00053
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.61	0.000105
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.71	0.000475
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	1	AY.74	0.000116
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	1	1	AY.75	0.000056
ORF1ab/nsp15A1-B	257	R257G	Cgt	Ggt	1	1	AY.75	0.000056
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	1	AY.75.1	0.00018
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.75.1	0.00018
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	AY.8	0.000606
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	AY.80	0.001129
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.82	0.001357
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	AY.84	0.000437
ORF1ab/nsp15A1-B	257	R257G	Cgt	Ggt	1	1	AY.84	0.000437
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	AY.87	0.000833
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	AY.9.2	0.000037
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.95	0.000761
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.96	0.002075
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AY.98	0.000079
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	AY.98	0.000079
ORF1ab/nsp15A1-B	257	R257S	Cgt	Agt	1	1	AY.98.1	0.000048
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	1	AY.99.2	0.000092
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	AZ.5	0.003509
ORF1ab/nsp15A1-B	257	R257P	cGt	cCt	1	1	B	0.000128
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	257	R257G	Cgt	Ggt	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	257	R257del	CGT	---	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	257	R257F	CGt	TTt	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	257	R257Y	CGt	TAt	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	257	R257del	CGT	---	1	1	B.1.1.1	0.000327
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	B.1.1.10	0.001115
ORF1ab/nsp15A1-B	257	R257P	cGt	cCt	1	1	B.1.1.161	0.003534
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	B.1.1.186	0.003436
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.1.198	0.001468
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	B.1.1.216	0.00089
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.1.26	0.005236
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.1.265	0.003155
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	1	B.1.1.28	0.000311
ORF1ab/nsp15A1-B	257	R257R	cgT	cgA	1	1	B.1.1.282	0.011628
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.1.284	0.000107
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.1.288	0.001916
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.1.317	0.000412
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	1	B.1.1.318	0.000302
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.1.323	0.014085
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	B.1.1.339	0.010526
ORF1ab/nsp15A1-B	257	R257R	cgT	cgA	1	1	B.1.1.39	0.00051
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	B.1.1.39	0.00051
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.1.391	0.008547
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	1	1	B.1.1.420	0.001006
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.1.434	0.000349
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.1.448	0.002033
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.1.464	0.001473
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.1.50	0.000679
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	B.1.1.51	0.001718
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	B.1.1.519	0.00004
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.1.523	0.001563
ORF1ab/nsp15A1-B	257	R257del1	cgT	cg-	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	257	R257G	Cgt	Ggt	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	257	R257P	cGt	cCt	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	257	R257del	CGT	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	1	1	B.1.110	0.004525
ORF1ab/nsp15A1-B	257	R257S	Cgt	Agt	1	1	B.1.146	0.004237
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.147	0.000756
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.149	0.003425
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	1	1	B.1.157	0.002985
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	B.1.160	0.000031
ORF1ab/nsp15A1-B	257	R257R	cgT	cgA	1	1	B.1.160.16	0.000929
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	1	B.1.177	0.000013
ORF1ab/nsp15A1-B	257	R257E	CGT	GAA	1	1	B.1.177	0.000013
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	1	1	B.1.177.10	0.000878
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.177.12	0.000152
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.177.23	0.003236
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.177.43	0.001477
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.177.45	0.000381
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.177.60	0.000218
ORF1ab/nsp15A1-B	257	R257del	CGT	---	1	1	B.1.177.68	0.015152
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	1	1	B.1.177.77	0.000726
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.177.8	0.000752
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.177.82	0.000477
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.177.86	0.000183
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.177.88	0.012346
ORF1ab/nsp15A1-B	257	R257S	Cgt	Agt	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	257	R257G	Cgt	Ggt	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	B.1.206	0.000816
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.22	0.001318
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	B.1.221	0.000071
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.222	0.001692
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	B.1.234	0.000132
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.258.11	0.000396
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.258.17	0.000104
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	1	B.1.265	0.001271
ORF1ab/nsp15A1-B	257	R257P	cGt	cCt	1	1	B.1.301	0.005917
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	1	1	B.1.301	0.005917
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.311	0.000275
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	1	B.1.36	0.000146
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.36	0.000146
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	1	1	B.1.36.17	0.000494
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.36.29	0.000517
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.36.35	0.002604
ORF1ab/nsp15A1-B	257	R257F	CGt	TTt	1	1	B.1.36.8	0.001
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.369	0.000285
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.371	0.001122
ORF1ab/nsp15A1-B	257	R257del	CGT	---	1	1	B.1.375	0.00082
ORF1ab/nsp15A1-B	257	R257del	CGT	---	1	1	B.1.396	0.000706
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.400	0.000429
ORF1ab/nsp15A1-B	257	R257del1	CgT	-gN	1	1	B.1.416.1	0.001563
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	1	1	B.1.427	0.00005
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	1	B.1.427	0.00005
ORF1ab/nsp15A1-B	257	R257S	Cgt	Agt	1	1	B.1.438.1	0.000107
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.469	0.00361
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	1	1	B.1.470	0.001404
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.523	0.002451
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.524	0.001406
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	1	B.1.525	0.000113
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.526	0.000024
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.527	0.003704
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.560	0.00463
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.582	0.000491
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.588	0.00091
ORF1ab/nsp15A1-B	257	R257L	cGt	cTt	1	1	B.1.595	0.000261
ORF1ab/nsp15A1-B	257	R257del1	cgT	cg-	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	257	R257del	CGT	---	1	1	B.1.609	0.000479
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.617.1	0.000129
ORF1ab/nsp15A1-B	257	R257S	Cgt	Agt	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	257	R257del	CGT	---	1	1	B.1.620	0.000946
ORF1ab/nsp15A1-B	257	R257H	cGt	cAt	1	1	B.1.621	0.000089
ORF1ab/nsp15A1-B	257	R257del	CGT	---	1	1	B.1.621.1	0.000506
ORF1ab/nsp15A1-B	257	R257P	cGt	cCt	1	1	B.1.623	0.000536
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.1.637	0.000073
ORF1ab/nsp15A1-B	257	R257G	Cgt	Ggt	1	1	B.29	0.003509
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.3	0.000831
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.39	0.002331
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	B.6.6	0.000889
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	C.26	0.007353
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	C.31	0.017857
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	1	1	M.3	0.076923
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	N.5	0.001767
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	1	P.1.1	0.000318
ORF1ab/nsp15A1-B	257	R257R	cgT	cgG	1	1	P.1.14	0.000048
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	P.1.17	0.000162
ORF1ab/nsp15A1-B	257	R257C	Cgt	Tgt	1	1	P.2	0.000187
ORF1ab/nsp15A1-B	257	R257R	cgT	cgC	1	1	Q.7	0.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.