CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 256

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B256K256RK6708RnonsynaAaaGa1151120.97391320386-20388
ORF1ab/nsp15A1-B256K256RK6708RnonsynaAAaGG11530.02608720386-20388
ORF1ab/nsp15A1-B256K256NK6708NnonsynaaAaaC1091030.94495420386-20388
ORF1ab/nsp15A1-B256K256NK6708NnonsynaaAaaT10960.055045920386-20388
ORF1ab/nsp15A1-B256K256KK6708KsynaaAaaG8181120386-20388
ORF1ab/nsp15A1-B256K256delK6708deldelAAA---4949120386-20388
ORF1ab/nsp15A1-B256K256EK6708EnonsynAaaGaa2828120386-20388
ORF1ab/nsp15A1-B256K256IK6708InonsynaAaaTa15140.93333320386-20388
ORF1ab/nsp15A1-B256K256IK6708InonsynaAAaTT1510.066666720386-20388
ORF1ab/nsp15A1-B256K256TK6708TnonsynaAaaCa99120386-20388
ORF1ab/nsp15A1-B256K256QK6708QnonsynAaaCaa77120386-20388
ORF1ab/nsp15A1-B256K256XK6708XnonsynAaaTaa55120386-20388
ORF1ab/nsp15A1-B256K256del1K6708del1delAaa-aa540.820386-20388
ORF1ab/nsp15A1-B256K256del1K6708del1delAaA-aN510.220386-20388
ORF1ab/nsp15A1-B256K256HK6708HnonsynAaACaT22120386-20388
ORF1ab/nsp15A1-B256K256LK6708LnonsynAAaCTa210.520386-20388
ORF1ab/nsp15A1-B256K256LK6708LnonsynAAACTT210.520386-20388
ORF1ab/nsp15A1-B256K256VK6708VnonsynAAaGTa11120386-20388
ORF1ab/nsp15A1-B256K256del2K6708del2delAAa--a11120386-20388
ORF1ab/nsp15A1-B256K256YK6708YnonsynAaATaT11120386-20388

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B256K256RaAaaGa112115All0.000021
ORF1ab/nsp15A1-B256K256RaAAaGG3115All0.000001
ORF1ab/nsp15A1-B256K256NaaAaaC103109All0.00002
ORF1ab/nsp15A1-B256K256NaaAaaT6109All0.000001
ORF1ab/nsp15A1-B256K256NaaAaaC9899B.1.1.70.000088
ORF1ab/nsp15A1-B256K256NaaAaaT199B.1.1.70.000001
ORF1ab/nsp15A1-B256K256KaaAaaG8181All0.000015
ORF1ab/nsp15A1-B256K256delAAA---4949All0.000009
ORF1ab/nsp15A1-B256K256EAaaGaa2828All0.000005
ORF1ab/nsp15A1-B256K256RaAaaGa2222AY.50.000454
ORF1ab/nsp15A1-B256K256RaAaaGa1818B.1.1.4561
ORF1ab/nsp15A1-B256K256IaAaaTa1415All0.000003
ORF1ab/nsp15A1-B256K256IaAAaTT115All0
ORF1ab/nsp15A1-B256K256KaaAaaG1515B.1.1.70.000013
ORF1ab/nsp15A1-B256K256KaaAaaG1414AY.1130.001993
ORF1ab/nsp15A1-B256K256RaAaaGa1414B.1.1.70.000013
ORF1ab/nsp15A1-B256K256TaAaaCa99All0.000002
ORF1ab/nsp15A1-B256K256delAAA---88AY.590.004237
ORF1ab/nsp15A1-B256K256RaAaaGa88B.1.1.630.003086
ORF1ab/nsp15A1-B256K256KaaAaaG88B.1.20.00007
ORF1ab/nsp15A1-B256K256QAaaCaa77All0.000001
ORF1ab/nsp15A1-B256K256KaaAaaG77AY.40.000011
ORF1ab/nsp15A1-B256K256EAaaGaa77AY.430.000031
ORF1ab/nsp15A1-B256K256delAAA---660.333333
ORF1ab/nsp15A1-B256K256XAaaTaa55All0.000001
ORF1ab/nsp15A1-B256K256del1Aaa-aa45All0.000001
ORF1ab/nsp15A1-B256K256del1AaA-aN15All0
ORF1ab/nsp15A1-B256K256RaAaaGa55B.10.000046
ORF1ab/nsp15A1-B256K256RaAaaGa55B.1.4290.000118
ORF1ab/nsp15A1-B256K256RaAaaGa44AY.750.000224
ORF1ab/nsp15A1-B256K256EAaaGaa44B.10.000037
ORF1ab/nsp15A1-B256K256KaaAaaG44B.1.1770.000053
ORF1ab/nsp15A1-B256K256delAAA---44B.1.20.000035
ORF1ab/nsp15A1-B256K256RaAaaGa33AY.1190.000106
ORF1ab/nsp15A1-B256K256delAAA---33AY.250.000018
ORF1ab/nsp15A1-B256K256RaAaaGa33AY.40.000005
ORF1ab/nsp15A1-B256K256delAAA---33AY.430.000013
ORF1ab/nsp15A1-B256K256RaAaaGa33AY.440.000018
ORF1ab/nsp15A1-B256K256RaAaaGa33AY.90.000203
ORF1ab/nsp15A1-B256K256delAAA---33AY.9.20.00011
ORF1ab/nsp15A1-B256K256EAaaGaa33B.1.10.000054
ORF1ab/nsp15A1-B256K256TaAaaCa33B.1.1.70.000003
ORF1ab/nsp15A1-B256K256delAAA---33B.1.1.70.000003
ORF1ab/nsp15A1-B256K256RaAaaGa33B.1.1770.00004
ORF1ab/nsp15A1-B256K256EAaaGaa33B.1.20.000026
ORF1ab/nsp15A1-B256K256delAAA---33B.1.2580.0002
ORF1ab/nsp15A1-B256K256RaAAaGG220.111111
ORF1ab/nsp15A1-B256K256HAaACaT22All0
ORF1ab/nsp15A1-B256K256LAAACTT12All0
ORF1ab/nsp15A1-B256K256LAAaCTa12All0
ORF1ab/nsp15A1-B256K256KaaAaaG22AY.1030.000012
ORF1ab/nsp15A1-B256K256KaaAaaG22AY.260.000057
ORF1ab/nsp15A1-B256K256IaAaaTa22AY.290.000032
ORF1ab/nsp15A1-B256K256KaaAaaG22AY.330.000134
ORF1ab/nsp15A1-B256K256IaAaaTa22AY.40.000003
ORF1ab/nsp15A1-B256K256IaAaaTa22AY.430.000009
ORF1ab/nsp15A1-B256K256RaAaaGa12AY.530.000288
ORF1ab/nsp15A1-B256K256RaAAaGG12AY.530.000288
ORF1ab/nsp15A1-B256K256XAaaTaa22B.10.000018
ORF1ab/nsp15A1-B256K256NaaAaaT22B.1.10.000036
ORF1ab/nsp15A1-B256K256LAAACTT12B.1.10.000018
ORF1ab/nsp15A1-B256K256LAAaCTa12B.1.10.000018
ORF1ab/nsp15A1-B256K256IaAAaTT12B.1.10.000018
ORF1ab/nsp15A1-B256K256IaAaaTa12B.1.10.000018
ORF1ab/nsp15A1-B256K256KaaAaaG22B.1.1.2670.020202
ORF1ab/nsp15A1-B256K256EAaaGaa22B.1.1.70.000002
ORF1ab/nsp15A1-B256K256KaaAaaG22B.1.2400.000431
ORF1ab/nsp15A1-B256K256RaAaaGa22B.1.5160.003914
ORF1ab/nsp15A1-B256K256delAAA---22B.1.5170.000854
ORF1ab/nsp15A1-B256K256RaAaaGa22B.1.617.20.000008
ORF1ab/nsp15A1-B256K256KaaAaaG22B.1.617.20.000008
ORF1ab/nsp15A1-B256K256delAAA---22P.1.150.000465
ORF1ab/nsp15A1-B256K256IaAaaTa110.055556
ORF1ab/nsp15A1-B256K256EAaaGaa110.055556
ORF1ab/nsp15A1-B256K256VAAaGTa110.055556
ORF1ab/nsp15A1-B256K256XAaaTaa11A0.000387
ORF1ab/nsp15A1-B256K256delAAA---11A.2.40.003367
ORF1ab/nsp15A1-B256K256del2AAa--a11All0
ORF1ab/nsp15A1-B256K256VAAaGTa11All0
ORF1ab/nsp15A1-B256K256YAaATaT11All0
ORF1ab/nsp15A1-B256K256KaaAaaG11AY.1020.000027
ORF1ab/nsp15A1-B256K256RaAaaGa11AY.1020.000027
ORF1ab/nsp15A1-B256K256EAaaGaa11AY.1030.000006
ORF1ab/nsp15A1-B256K256TaAaaCa11AY.1030.000006
ORF1ab/nsp15A1-B256K256RaAaaGa11AY.1030.000006
ORF1ab/nsp15A1-B256K256KaaAaaG11AY.110.001339
ORF1ab/nsp15A1-B256K256del1Aaa-aa11AY.1200.000037
ORF1ab/nsp15A1-B256K256EAaaGaa11AY.120.10.000321
ORF1ab/nsp15A1-B256K256RaAaaGa11AY.250.000006
ORF1ab/nsp15A1-B256K256NaaAaaC11AY.30.00001
ORF1ab/nsp15A1-B256K256EAaaGaa11AY.30.00001
ORF1ab/nsp15A1-B256K256TaAaaCa11AY.30.00001
ORF1ab/nsp15A1-B256K256delAAA---11AY.40.000002
ORF1ab/nsp15A1-B256K256del1AaA-aN11AY.40.000002
ORF1ab/nsp15A1-B256K256NaaAaaC11AY.40.000002
ORF1ab/nsp15A1-B256K256EAaaGaa11AY.40.000002
ORF1ab/nsp15A1-B256K256EAaaGaa11AY.4.20.000022
ORF1ab/nsp15A1-B256K256KaaAaaG11AY.430.000004
ORF1ab/nsp15A1-B256K256RaAaaGa11AY.450.000122
ORF1ab/nsp15A1-B256K256EAaaGaa11AY.470.000031
ORF1ab/nsp15A1-B256K256KaaAaaG11AY.5.40.000277
ORF1ab/nsp15A1-B256K256KaaAaaG11AY.530.000288
ORF1ab/nsp15A1-B256K256KaaAaaG11AY.590.00053
ORF1ab/nsp15A1-B256K256EAaaGaa11AY.590.00053
ORF1ab/nsp15A1-B256K256IaAaaTa11AY.7.10.000113
ORF1ab/nsp15A1-B256K256KaaAaaG11AY.700.000209
ORF1ab/nsp15A1-B256K256RaAaaGa11AY.840.000437
ORF1ab/nsp15A1-B256K256TaAaaCa11B0.000128
ORF1ab/nsp15A1-B256K256KaaAaaG11B.10.000009
ORF1ab/nsp15A1-B256K256del1Aaa-aa11B.10.000009
ORF1ab/nsp15A1-B256K256delAAA---11B.10.000009
ORF1ab/nsp15A1-B256K256HAaACaT11B.1.10.000018
ORF1ab/nsp15A1-B256K256XAaaTaa11B.1.10.000018
ORF1ab/nsp15A1-B256K256KaaAaaG11B.1.10.000018
ORF1ab/nsp15A1-B256K256QAaaCaa11B.1.10.000018
ORF1ab/nsp15A1-B256K256YAaATaT11B.1.10.000018
ORF1ab/nsp15A1-B256K256delAAA---11B.1.1.10.000327
ORF1ab/nsp15A1-B256K256KaaAaaG11B.1.1.2650.003155
ORF1ab/nsp15A1-B256K256RaAaaGa11B.1.1.2770.000759
ORF1ab/nsp15A1-B256K256IaAaaTa11B.1.1.3720.000689
ORF1ab/nsp15A1-B256K256RaAaaGa11B.1.1.5190.00004
ORF1ab/nsp15A1-B256K256QAaaCaa11B.1.1.70.000001
ORF1ab/nsp15A1-B256K256del1Aaa-aa11B.1.1.70.000001
ORF1ab/nsp15A1-B256K256RaAaaGa11B.1.1.700.000341
ORF1ab/nsp15A1-B256K256delAAA---11B.1.1.700.000341
ORF1ab/nsp15A1-B256K256IaAaaTa11B.1.1110.001175
ORF1ab/nsp15A1-B256K256QAaaCaa11B.1.1600.000031
ORF1ab/nsp15A1-B256K256IaAaaTa11B.1.160.140.002119
ORF1ab/nsp15A1-B256K256QAaaCaa11B.1.160.90.007194
ORF1ab/nsp15A1-B256K256QAaaCaa11B.1.1770.000013
ORF1ab/nsp15A1-B256K256IaAaaTa11B.1.177.40.000211
ORF1ab/nsp15A1-B256K256QAaaCaa11B.1.177.440.000519
ORF1ab/nsp15A1-B256K256delAAA---11B.1.177.680.015152
ORF1ab/nsp15A1-B256K256KaaAaaG11B.1.177.770.000726
ORF1ab/nsp15A1-B256K256RaAaaGa11B.1.177.810.000189
ORF1ab/nsp15A1-B256K256TaAaaCa11B.1.177.860.000183
ORF1ab/nsp15A1-B256K256del1Aaa-aa11B.1.20.000009
ORF1ab/nsp15A1-B256K256RaAaaGa11B.1.20.000009
ORF1ab/nsp15A1-B256K256NaaAaaC11B.1.20.000009
ORF1ab/nsp15A1-B256K256KaaAaaG11B.1.2210.000071
ORF1ab/nsp15A1-B256K256RaAaaGa11B.1.2580.000067
ORF1ab/nsp15A1-B256K256RaAaaGa11B.1.3510.00003
ORF1ab/nsp15A1-B256K256TaAaaCa11B.1.351.20.000303
ORF1ab/nsp15A1-B256K256KaaAaaG11B.1.36.10.00114
ORF1ab/nsp15A1-B256K256HAaACaT11B.1.36.80.001
ORF1ab/nsp15A1-B256K256XAaaTaa11B.1.3750.00082
ORF1ab/nsp15A1-B256K256delAAA---11B.1.3750.00082
ORF1ab/nsp15A1-B256K256delAAA---11B.1.3960.000706
ORF1ab/nsp15A1-B256K256RaAaaGa11B.1.4080.00369
ORF1ab/nsp15A1-B256K256delAAA---11B.1.416.10.001563
ORF1ab/nsp15A1-B256K256RaAaaGa11B.1.4220.000812
ORF1ab/nsp15A1-B256K256KaaAaaG11B.1.4290.000024
ORF1ab/nsp15A1-B256K256KaaAaaG11B.1.4710.002732
ORF1ab/nsp15A1-B256K256RaAaaGa11B.1.4970.000315
ORF1ab/nsp15A1-B256K256EAaaGaa11B.1.4970.000315
ORF1ab/nsp15A1-B256K256NaaAaaC11B.1.4970.000315
ORF1ab/nsp15A1-B256K256QAaaCaa11B.1.4970.000315
ORF1ab/nsp15A1-B256K256KaaAaaG11B.1.5170.000427
ORF1ab/nsp15A1-B256K256NaaAaaT11B.1.5260.000024
ORF1ab/nsp15A1-B256K256KaaAaaG11B.1.5260.000024
ORF1ab/nsp15A1-B256K256NaaAaaT11B.1.5610.000397
ORF1ab/nsp15A1-B256K256del2AAa--a11B.1.5800.004065
ORF1ab/nsp15A1-B256K256KaaAaaG11B.1.5960.000087
ORF1ab/nsp15A1-B256K256delAAA---11B.1.6090.000479
ORF1ab/nsp15A1-B256K256NaaAaaC11B.1.617.20.000004
ORF1ab/nsp15A1-B256K256delAAA---11B.1.6200.000946
ORF1ab/nsp15A1-B256K256delAAA---11B.1.621.10.000506
ORF1ab/nsp15A1-B256K256KaaAaaG11B.1.6370.000073
ORF1ab/nsp15A1-B256K256RaAaaGa11B.6.60.000889
ORF1ab/nsp15A1-B256K256TaAaaCa11B.6.60.000889
ORF1ab/nsp15A1-B256K256KaaAaaG11B.610.005747
ORF1ab/nsp15A1-B256K256NaaAaaT11C.20.016129
ORF1ab/nsp15A1-B256K256IaAaaTa11D.20.000075
ORF1ab/nsp15A1-B256K256KaaAaaG11P.10.000016