CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 250

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B250L250LL6702LsynCtaTta8167300.89460820368-20370
ORF1ab/nsp15A1-B250L250LL6702LsynctActG816700.085784320368-20370
ORF1ab/nsp15A1-B250L250LL6702LsynctActC81690.011029420368-20370
ORF1ab/nsp15A1-B250L250LL6702LsynctActT81670.0085784320368-20370
ORF1ab/nsp15A1-B250L250IL6702InonsynCtaAta238238120368-20370
ORF1ab/nsp15A1-B250L250PL6702PnonsyncTacCa7474120368-20370
ORF1ab/nsp15A1-B250L250delL6702deldelCTA---3636120368-20370
ORF1ab/nsp15A1-B250L250QL6702QnonsyncTacAa44120368-20370
ORF1ab/nsp15A1-B250L250del1L6702del1delcTac-a22120368-20370
ORF1ab/nsp15A1-B250L250SL6702SnonsynCTaTCa22120368-20370
ORF1ab/nsp15A1-B250L250CL6702CnonsynCTATGC11120368-20370
ORF1ab/nsp15A1-B250L250GL6702GnonsynCTAGGT11120368-20370
ORF1ab/nsp15A1-B250L250VL6702VnonsynCtaGta11120368-20370

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B250L250LCtaTta730816All0.00014
ORF1ab/nsp15A1-B250L250LctActG70816All0.000013
ORF1ab/nsp15A1-B250L250LctActC9816All0.000002
ORF1ab/nsp15A1-B250L250LctActT7816All0.000001
ORF1ab/nsp15A1-B250L250ICtaAta238238All0.000046
ORF1ab/nsp15A1-B250L250LCtaTta188188AY.440.001144
ORF1ab/nsp15A1-B250L250ICtaAta141141B.1.20.001242
ORF1ab/nsp15A1-B250L250LCtaTta133133B.1.1.2360.917241
ORF1ab/nsp15A1-B250L250PcTacCa7474All0.000014
ORF1ab/nsp15A1-B250L250LCtaTta6063B.1.617.20.000226
ORF1ab/nsp15A1-B250L250LctActG363B.1.617.20.000011
ORF1ab/nsp15A1-B250L250LCtaTta3849B.1.1.70.000034
ORF1ab/nsp15A1-B250L250LctActG1149B.1.1.70.00001
ORF1ab/nsp15A1-B250L250delCTA---3636All0.000007
ORF1ab/nsp15A1-B250L250LCtaTta2328B.1.1770.000303
ORF1ab/nsp15A1-B250L250LctActC528B.1.1770.000066
ORF1ab/nsp15A1-B250L250LCtaTta2525B.1.5110.862069
ORF1ab/nsp15A1-B250L250PcTacCa2323AY.280.043478
ORF1ab/nsp15A1-B250L250LCtaTta2222AY.610.002305
ORF1ab/nsp15A1-B250L250LCtaTta2020AY.330.001336
ORF1ab/nsp15A1-B250L250ICtaAta1919B.1.1.70.000017
ORF1ab/nsp15A1-B250L250LCtaTta1516AY.1030.000093
ORF1ab/nsp15A1-B250L250LctActG116AY.1030.000006
ORF1ab/nsp15A1-B250L250LCtaTta1516B.1.10.000272
ORF1ab/nsp15A1-B250L250LctActG116B.1.10.000018
ORF1ab/nsp15A1-B250L250LCtaTta814AY.430.000035
ORF1ab/nsp15A1-B250L250LctActG514AY.430.000022
ORF1ab/nsp15A1-B250L250LctActC114AY.430.000004
ORF1ab/nsp15A1-B250L250LctActG1214P.20.00224
ORF1ab/nsp15A1-B250L250LCtaTta214P.20.000373
ORF1ab/nsp15A1-B250L250LCtaTta713AY.30.00007
ORF1ab/nsp15A1-B250L250LctActG613AY.30.00006
ORF1ab/nsp15A1-B250L250LCtaTta1112AY.250.000066
ORF1ab/nsp15A1-B250L250LctActG112AY.250.000006
ORF1ab/nsp15A1-B250L250LCtaTta912AY.40.000014
ORF1ab/nsp15A1-B250L250LctActG212AY.40.000003
ORF1ab/nsp15A1-B250L250LctActT112AY.40.000002
ORF1ab/nsp15A1-B250L250LCtaTta610B.10.000055
ORF1ab/nsp15A1-B250L250LctActG210B.10.000018
ORF1ab/nsp15A1-B250L250LctActT110B.10.000009
ORF1ab/nsp15A1-B250L250LctActC110B.10.000009
ORF1ab/nsp15A1-B250L250LCtaTta99AY.540.000858
ORF1ab/nsp15A1-B250L250LCtaTta99AY.9.20.000331
ORF1ab/nsp15A1-B250L250PcTacCa99B.1.1770.000119
ORF1ab/nsp15A1-B250L250LCtaTta79B.1.20.000062
ORF1ab/nsp15A1-B250L250LctActG29B.1.20.000018
ORF1ab/nsp15A1-B250L250LCtaTta89B.1.3510.000238
ORF1ab/nsp15A1-B250L250LctActT19B.1.3510.00003
ORF1ab/nsp15A1-B250L250PcTacCa88AY.1030.00005
ORF1ab/nsp15A1-B250L250PcTacCa88AY.50.000165
ORF1ab/nsp15A1-B250L250LCtaTta88AY.750.000448
ORF1ab/nsp15A1-B250L250ICtaAta88B.1.1.370.001543
ORF1ab/nsp15A1-B250L250LCtaTta88B.1.2580.000532
ORF1ab/nsp15A1-B250L250ICtaAta88B.1.617.20.00003
ORF1ab/nsp15A1-B250L250LCtaTta67AY.98.10.000291
ORF1ab/nsp15A1-B250L250LctActC17AY.98.10.000048
ORF1ab/nsp15A1-B250L250LCtaTta77B.1.4290.000165
ORF1ab/nsp15A1-B250L250LCtaTta36AY.1020.00008
ORF1ab/nsp15A1-B250L250LctActG36AY.1020.00008
ORF1ab/nsp15A1-B250L250ICtaAta66AY.250.000036
ORF1ab/nsp15A1-B250L250delCTA---66AY.590.003178
ORF1ab/nsp15A1-B250L250ICtaAta66P.10.000095
ORF1ab/nsp15A1-B250L250LCtaTta55AY.1180.000313
ORF1ab/nsp15A1-B250L250ICtaAta55AY.90.000338
ORF1ab/nsp15A1-B250L250LCtaTta55B.1.177.770.003631
ORF1ab/nsp15A1-B250L250delCTA---440.222222
ORF1ab/nsp15A1-B250L250QcTacAa44All0.000001
ORF1ab/nsp15A1-B250L250LCtaTta44AY.1000.000184
ORF1ab/nsp15A1-B250L250LctActG44AY.1040.007937
ORF1ab/nsp15A1-B250L250ICtaAta44AY.430.000018
ORF1ab/nsp15A1-B250L250ICtaAta44AY.60.000165
ORF1ab/nsp15A1-B250L250PcTacCa44B.10.000037
ORF1ab/nsp15A1-B250L250LCtaTta44B.1.1.1890.006051
ORF1ab/nsp15A1-B250L250LCtaTta44B.1.438.10.000429
ORF1ab/nsp15A1-B250L250LCtaTta44P.1.140.000191
ORF1ab/nsp15A1-B250L250LctActT330.166667
ORF1ab/nsp15A1-B250L250LCtaTta23AY.1190.000071
ORF1ab/nsp15A1-B250L250LctActG13AY.1190.000035
ORF1ab/nsp15A1-B250L250LCtaTta33AY.130.000483
ORF1ab/nsp15A1-B250L250PcTacCa33AY.30.00003
ORF1ab/nsp15A1-B250L250ICtaAta33AY.40.000005
ORF1ab/nsp15A1-B250L250delCTA---33AY.430.000013
ORF1ab/nsp15A1-B250L250LctActG23AY.470.000062
ORF1ab/nsp15A1-B250L250LCtaTta13AY.470.000031
ORF1ab/nsp15A1-B250L250PcTacCa33AY.740.000347
ORF1ab/nsp15A1-B250L250LCtaTta33AY.980.000237
ORF1ab/nsp15A1-B250L250ICtaAta33B.1.1.10.00098
ORF1ab/nsp15A1-B250L250delCTA---33B.1.1.70.000003
ORF1ab/nsp15A1-B250L250LCtaTta33B.1.177.40.000633
ORF1ab/nsp15A1-B250L250delCTA---33B.1.20.000026
ORF1ab/nsp15A1-B250L250delCTA---33B.1.2580.0002
ORF1ab/nsp15A1-B250L250ICtaAta33B.1.5960.000261
ORF1ab/nsp15A1-B250L250PcTacCa33B.1.617.20.000011
ORF1ab/nsp15A1-B250L250LCtaTta33C.370.000348
ORF1ab/nsp15A1-B250L250LCtaTta33P.1.10.000953
ORF1ab/nsp15A1-B250L250SCTaTCa220.111111
ORF1ab/nsp15A1-B250L250del1cTac-a22All0
ORF1ab/nsp15A1-B250L250SCTaTCa22All0
ORF1ab/nsp15A1-B250L250LCtaTta22AY.1200.000074
ORF1ab/nsp15A1-B250L250LCtaTta22AY.140.000176
ORF1ab/nsp15A1-B250L250LCtaTta22AY.16.10.00094
ORF1ab/nsp15A1-B250L250LCtaTta12AY.230.00007
ORF1ab/nsp15A1-B250L250LctActG12AY.230.00007
ORF1ab/nsp15A1-B250L250delCTA---22AY.250.000012
ORF1ab/nsp15A1-B250L250LCtaTta22AY.260.000057
ORF1ab/nsp15A1-B250L250LCtaTta22AY.290.000032
ORF1ab/nsp15A1-B250L250LCtaTta22AY.390.000049
ORF1ab/nsp15A1-B250L250LCtaTta22AY.39.10.000079
ORF1ab/nsp15A1-B250L250PcTacCa22AY.40.000003
ORF1ab/nsp15A1-B250L250PcTacCa22AY.440.000012
ORF1ab/nsp15A1-B250L250ICtaAta22AY.750.000112
ORF1ab/nsp15A1-B250L250ICtaAta22B.10.000018
ORF1ab/nsp15A1-B250L250ICtaAta22B.1.10.000036
ORF1ab/nsp15A1-B250L250LCtaTta22B.1.1.2030.033898
ORF1ab/nsp15A1-B250L250LctActG22B.1.1.250.001137
ORF1ab/nsp15A1-B250L250LctActG22B.1.1.3680.006173
ORF1ab/nsp15A1-B250L250ICtaAta22B.1.1.5190.000079
ORF1ab/nsp15A1-B250L250LCtaTta22B.1.1.630.000772
ORF1ab/nsp15A1-B250L250LCtaTta22B.1.177.720.00678
ORF1ab/nsp15A1-B250L250PcTacCa22B.1.20.000018
ORF1ab/nsp15A1-B250L250LctActG22B.1.2360.004107
ORF1ab/nsp15A1-B250L250delCTA---22B.1.5170.000854
ORF1ab/nsp15A1-B250L250LctActG22B.1.617.10.000258
ORF1ab/nsp15A1-B250L250LCtaTta22P.10.000032
ORF1ab/nsp15A1-B250L250delCTA---22P.1.150.000465
ORF1ab/nsp15A1-B250L250PcTacCa11A.20.000662
ORF1ab/nsp15A1-B250L250delCTA---11A.2.40.003367
ORF1ab/nsp15A1-B250L250VCtaGta11All0
ORF1ab/nsp15A1-B250L250GCTAGGT11All0
ORF1ab/nsp15A1-B250L250CCTATGC11All0
ORF1ab/nsp15A1-B250L250ICtaAta11AY.1030.000006
ORF1ab/nsp15A1-B250L250PcTacCa11AY.1100.000113
ORF1ab/nsp15A1-B250L250ICtaAta11AY.1130.000142
ORF1ab/nsp15A1-B250L250LctActG11AY.1170.000085
ORF1ab/nsp15A1-B250L250ICtaAta11AY.1180.000063
ORF1ab/nsp15A1-B250L250PcTacCa11AY.1190.000035
ORF1ab/nsp15A1-B250L250ICtaAta11AY.230.00007
ORF1ab/nsp15A1-B250L250PcTacCa11AY.250.000006
ORF1ab/nsp15A1-B250L250ICtaAta11AY.290.000016
ORF1ab/nsp15A1-B250L250del1cTac-a11AY.30.00001
ORF1ab/nsp15A1-B250L250ICtaAta11AY.370.000316
ORF1ab/nsp15A1-B250L250LCtaTta11AY.370.000316
ORF1ab/nsp15A1-B250L250LctActG11AY.380.000499
ORF1ab/nsp15A1-B250L250LCtaTta11AY.4.20.000022
ORF1ab/nsp15A1-B250L250PcTacCa11AY.430.000004
ORF1ab/nsp15A1-B250L250LCtaTta11AY.46.50.000198
ORF1ab/nsp15A1-B250L250LctActG11AY.5.30.000337
ORF1ab/nsp15A1-B250L250PcTacCa11AY.500.000799
ORF1ab/nsp15A1-B250L250LCtaTta11AY.650.000533
ORF1ab/nsp15A1-B250L250QcTacAa11AY.75.10.00018
ORF1ab/nsp15A1-B250L250LCtaTta11AY.75.10.00018
ORF1ab/nsp15A1-B250L250ICtaAta11AY.850.000427
ORF1ab/nsp15A1-B250L250ICtaAta11AY.980.000079
ORF1ab/nsp15A1-B250L250LCtaTta11AY.99.20.000092
ORF1ab/nsp15A1-B250L250CCTATGC11B0.000128
ORF1ab/nsp15A1-B250L250QcTacAa11B.1.10.000018
ORF1ab/nsp15A1-B250L250ICtaAta11B.1.1.1890.001513
ORF1ab/nsp15A1-B250L250LCtaTta11B.1.1.2220.000204
ORF1ab/nsp15A1-B250L250ICtaAta11B.1.1.2430.004082
ORF1ab/nsp15A1-B250L250LCtaTta11B.1.1.3060.000438
ORF1ab/nsp15A1-B250L250LctActT11B.1.1.3720.000689
ORF1ab/nsp15A1-B250L250LCtaTta11B.1.1.3890.006061
ORF1ab/nsp15A1-B250L250VCtaGta11B.1.1.4160.000905
ORF1ab/nsp15A1-B250L250LCtaTta11B.1.1.4200.001006
ORF1ab/nsp15A1-B250L250LCtaTta11B.1.1.510.001718
ORF1ab/nsp15A1-B250L250LctActG11B.1.1.5190.00004
ORF1ab/nsp15A1-B250L250QcTacAa11B.1.1.70.000001
ORF1ab/nsp15A1-B250L250del1cTac-a11B.1.1.70.000001
ORF1ab/nsp15A1-B250L250delCTA---11B.1.1.700.000341
ORF1ab/nsp15A1-B250L250PcTacCa11B.1.1600.000031
ORF1ab/nsp15A1-B250L250delCTA---11B.1.177.680.015152
ORF1ab/nsp15A1-B250L250LCtaTta11B.1.2340.000132
ORF1ab/nsp15A1-B250L250QcTacAa11B.1.2410.000812
ORF1ab/nsp15A1-B250L250ICtaAta11B.1.2430.00007
ORF1ab/nsp15A1-B250L250LCtaTta11B.1.258.170.000104
ORF1ab/nsp15A1-B250L250GCTAGGT11B.1.36.10.00114
ORF1ab/nsp15A1-B250L250delCTA---11B.1.3750.00082
ORF1ab/nsp15A1-B250L250ICtaAta11B.1.3990.001934
ORF1ab/nsp15A1-B250L250delCTA---11B.1.4150.014286
ORF1ab/nsp15A1-B250L250delCTA---11B.1.416.10.001563
ORF1ab/nsp15A1-B250L250ICtaAta11B.1.4270.00005
ORF1ab/nsp15A1-B250L250LctActG11B.1.4970.000315
ORF1ab/nsp15A1-B250L250ICtaAta11B.1.5110.034483
ORF1ab/nsp15A1-B250L250ICtaAta11B.1.5580.004566
ORF1ab/nsp15A1-B250L250LCtaTta11B.1.595.10.005848
ORF1ab/nsp15A1-B250L250LctActC11B.1.5960.000087
ORF1ab/nsp15A1-B250L250delCTA---11B.1.6200.000946
ORF1ab/nsp15A1-B250L250LCtaTta11B.1.6210.000089
ORF1ab/nsp15A1-B250L250delCTA---11B.1.621.10.000506
ORF1ab/nsp15A1-B250L250ICtaAta11B.1.6230.000536
ORF1ab/nsp15A1-B250L250ICtaAta11C.2.10.006667
ORF1ab/nsp15A1-B250L250ICtaAta11C.370.000116
ORF1ab/nsp15A1-B250L250LCtaTta11D.20.000075
ORF1ab/nsp15A1-B250L250ICtaAta11N.90.005952
ORF1ab/nsp15A1-B250L250ICtaAta11P.1.150.000232