CoV-GLUE | Mutations | Mutation
CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 250
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
| ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
| ORF1ab/nsp15A1-B | 250 | L250L | L6702L | syn | Cta | Tta | 816 | 730 | 0.894608 | 20368-20370 |
| ORF1ab/nsp15A1-B | 250 | L250L | L6702L | syn | ctA | ctG | 816 | 70 | 0.0857843 | 20368-20370 |
| ORF1ab/nsp15A1-B | 250 | L250L | L6702L | syn | ctA | ctC | 816 | 9 | 0.0110294 | 20368-20370 |
| ORF1ab/nsp15A1-B | 250 | L250L | L6702L | syn | ctA | ctT | 816 | 7 | 0.00857843 | 20368-20370 |
| ORF1ab/nsp15A1-B | 250 | L250I | L6702I | nonsyn | Cta | Ata | 238 | 238 | 1 | 20368-20370 |
| ORF1ab/nsp15A1-B | 250 | L250P | L6702P | nonsyn | cTa | cCa | 74 | 74 | 1 | 20368-20370 |
| ORF1ab/nsp15A1-B | 250 | L250del | L6702del | del | CTA | --- | 36 | 36 | 1 | 20368-20370 |
| ORF1ab/nsp15A1-B | 250 | L250Q | L6702Q | nonsyn | cTa | cAa | 4 | 4 | 1 | 20368-20370 |
| ORF1ab/nsp15A1-B | 250 | L250del1 | L6702del1 | del | cTa | c-a | 2 | 2 | 1 | 20368-20370 |
| ORF1ab/nsp15A1-B | 250 | L250S | L6702S | nonsyn | CTa | TCa | 2 | 2 | 1 | 20368-20370 |
| ORF1ab/nsp15A1-B | 250 | L250C | L6702C | nonsyn | CTA | TGC | 1 | 1 | 1 | 20368-20370 |
| ORF1ab/nsp15A1-B | 250 | L250G | L6702G | nonsyn | CTA | GGT | 1 | 1 | 1 | 20368-20370 |
| ORF1ab/nsp15A1-B | 250 | L250V | L6702V | nonsyn | Cta | Gta | 1 | 1 | 1 | 20368-20370 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
| ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 730 | 816 | All | 0.00014 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 70 | 816 | All | 0.000013 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctC | 9 | 816 | All | 0.000002 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctT | 7 | 816 | All | 0.000001 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 238 | 238 | All | 0.000046 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 188 | 188 | AY.44 | 0.001144 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 141 | 141 | B.1.2 | 0.001242 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 133 | 133 | B.1.1.236 | 0.917241 |
| ORF1ab/nsp15A1-B | 250 | L250P | cTa | cCa | 74 | 74 | All | 0.000014 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 60 | 63 | B.1.617.2 | 0.000226 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 3 | 63 | B.1.617.2 | 0.000011 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 38 | 49 | B.1.1.7 | 0.000034 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 11 | 49 | B.1.1.7 | 0.00001 |
| ORF1ab/nsp15A1-B | 250 | L250del | CTA | --- | 36 | 36 | All | 0.000007 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 23 | 28 | B.1.177 | 0.000303 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctC | 5 | 28 | B.1.177 | 0.000066 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 25 | 25 | B.1.511 | 0.862069 |
| ORF1ab/nsp15A1-B | 250 | L250P | cTa | cCa | 23 | 23 | AY.28 | 0.043478 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 22 | 22 | AY.61 | 0.002305 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 20 | 20 | AY.33 | 0.001336 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 19 | 19 | B.1.1.7 | 0.000017 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 15 | 16 | AY.103 | 0.000093 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 1 | 16 | AY.103 | 0.000006 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 15 | 16 | B.1.1 | 0.000272 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 1 | 16 | B.1.1 | 0.000018 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 8 | 14 | AY.43 | 0.000035 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 5 | 14 | AY.43 | 0.000022 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctC | 1 | 14 | AY.43 | 0.000004 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 12 | 14 | P.2 | 0.00224 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 2 | 14 | P.2 | 0.000373 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 7 | 13 | AY.3 | 0.00007 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 6 | 13 | AY.3 | 0.00006 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 11 | 12 | AY.25 | 0.000066 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 1 | 12 | AY.25 | 0.000006 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 9 | 12 | AY.4 | 0.000014 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 2 | 12 | AY.4 | 0.000003 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctT | 1 | 12 | AY.4 | 0.000002 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 6 | 10 | B.1 | 0.000055 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 2 | 10 | B.1 | 0.000018 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctT | 1 | 10 | B.1 | 0.000009 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctC | 1 | 10 | B.1 | 0.000009 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 9 | 9 | AY.54 | 0.000858 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 9 | 9 | AY.9.2 | 0.000331 |
| ORF1ab/nsp15A1-B | 250 | L250P | cTa | cCa | 9 | 9 | B.1.177 | 0.000119 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 7 | 9 | B.1.2 | 0.000062 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 2 | 9 | B.1.2 | 0.000018 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 8 | 9 | B.1.351 | 0.000238 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctT | 1 | 9 | B.1.351 | 0.00003 |
| ORF1ab/nsp15A1-B | 250 | L250P | cTa | cCa | 8 | 8 | AY.103 | 0.00005 |
| ORF1ab/nsp15A1-B | 250 | L250P | cTa | cCa | 8 | 8 | AY.5 | 0.000165 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 8 | 8 | AY.75 | 0.000448 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 8 | 8 | B.1.1.37 | 0.001543 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 8 | 8 | B.1.258 | 0.000532 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 8 | 8 | B.1.617.2 | 0.00003 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 6 | 7 | AY.98.1 | 0.000291 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctC | 1 | 7 | AY.98.1 | 0.000048 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 7 | 7 | B.1.429 | 0.000165 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 3 | 6 | AY.102 | 0.00008 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 3 | 6 | AY.102 | 0.00008 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 6 | 6 | AY.25 | 0.000036 |
| ORF1ab/nsp15A1-B | 250 | L250del | CTA | --- | 6 | 6 | AY.59 | 0.003178 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 6 | 6 | P.1 | 0.000095 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 5 | 5 | AY.118 | 0.000313 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 5 | 5 | AY.9 | 0.000338 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 5 | 5 | B.1.177.77 | 0.003631 |
| ORF1ab/nsp15A1-B | 250 | L250del | CTA | --- | 4 | 4 | 0.222222 | |
| ORF1ab/nsp15A1-B | 250 | L250Q | cTa | cAa | 4 | 4 | All | 0.000001 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 4 | 4 | AY.100 | 0.000184 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 4 | 4 | AY.104 | 0.007937 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 4 | 4 | AY.43 | 0.000018 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 4 | 4 | AY.6 | 0.000165 |
| ORF1ab/nsp15A1-B | 250 | L250P | cTa | cCa | 4 | 4 | B.1 | 0.000037 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 4 | 4 | B.1.1.189 | 0.006051 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 4 | 4 | B.1.438.1 | 0.000429 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 4 | 4 | P.1.14 | 0.000191 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctT | 3 | 3 | 0.166667 | |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 2 | 3 | AY.119 | 0.000071 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 1 | 3 | AY.119 | 0.000035 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 3 | 3 | AY.13 | 0.000483 |
| ORF1ab/nsp15A1-B | 250 | L250P | cTa | cCa | 3 | 3 | AY.3 | 0.00003 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 3 | 3 | AY.4 | 0.000005 |
| ORF1ab/nsp15A1-B | 250 | L250del | CTA | --- | 3 | 3 | AY.43 | 0.000013 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 2 | 3 | AY.47 | 0.000062 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 1 | 3 | AY.47 | 0.000031 |
| ORF1ab/nsp15A1-B | 250 | L250P | cTa | cCa | 3 | 3 | AY.74 | 0.000347 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 3 | 3 | AY.98 | 0.000237 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 3 | 3 | B.1.1.1 | 0.00098 |
| ORF1ab/nsp15A1-B | 250 | L250del | CTA | --- | 3 | 3 | B.1.1.7 | 0.000003 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 3 | 3 | B.1.177.4 | 0.000633 |
| ORF1ab/nsp15A1-B | 250 | L250del | CTA | --- | 3 | 3 | B.1.2 | 0.000026 |
| ORF1ab/nsp15A1-B | 250 | L250del | CTA | --- | 3 | 3 | B.1.258 | 0.0002 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 3 | 3 | B.1.596 | 0.000261 |
| ORF1ab/nsp15A1-B | 250 | L250P | cTa | cCa | 3 | 3 | B.1.617.2 | 0.000011 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 3 | 3 | C.37 | 0.000348 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 3 | 3 | P.1.1 | 0.000953 |
| ORF1ab/nsp15A1-B | 250 | L250S | CTa | TCa | 2 | 2 | 0.111111 | |
| ORF1ab/nsp15A1-B | 250 | L250del1 | cTa | c-a | 2 | 2 | All | 0 |
| ORF1ab/nsp15A1-B | 250 | L250S | CTa | TCa | 2 | 2 | All | 0 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 2 | 2 | AY.120 | 0.000074 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 2 | 2 | AY.14 | 0.000176 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 2 | 2 | AY.16.1 | 0.00094 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 1 | 2 | AY.23 | 0.00007 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 1 | 2 | AY.23 | 0.00007 |
| ORF1ab/nsp15A1-B | 250 | L250del | CTA | --- | 2 | 2 | AY.25 | 0.000012 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 2 | 2 | AY.26 | 0.000057 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 2 | 2 | AY.29 | 0.000032 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 2 | 2 | AY.39 | 0.000049 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 2 | 2 | AY.39.1 | 0.000079 |
| ORF1ab/nsp15A1-B | 250 | L250P | cTa | cCa | 2 | 2 | AY.4 | 0.000003 |
| ORF1ab/nsp15A1-B | 250 | L250P | cTa | cCa | 2 | 2 | AY.44 | 0.000012 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 2 | 2 | AY.75 | 0.000112 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 2 | 2 | B.1 | 0.000018 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 2 | 2 | B.1.1 | 0.000036 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 2 | 2 | B.1.1.203 | 0.033898 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 2 | 2 | B.1.1.25 | 0.001137 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 2 | 2 | B.1.1.368 | 0.006173 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 2 | 2 | B.1.1.519 | 0.000079 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 2 | 2 | B.1.1.63 | 0.000772 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 2 | 2 | B.1.177.72 | 0.00678 |
| ORF1ab/nsp15A1-B | 250 | L250P | cTa | cCa | 2 | 2 | B.1.2 | 0.000018 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 2 | 2 | B.1.236 | 0.004107 |
| ORF1ab/nsp15A1-B | 250 | L250del | CTA | --- | 2 | 2 | B.1.517 | 0.000854 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 2 | 2 | B.1.617.1 | 0.000258 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 2 | 2 | P.1 | 0.000032 |
| ORF1ab/nsp15A1-B | 250 | L250del | CTA | --- | 2 | 2 | P.1.15 | 0.000465 |
| ORF1ab/nsp15A1-B | 250 | L250P | cTa | cCa | 1 | 1 | A.2 | 0.000662 |
| ORF1ab/nsp15A1-B | 250 | L250del | CTA | --- | 1 | 1 | A.2.4 | 0.003367 |
| ORF1ab/nsp15A1-B | 250 | L250V | Cta | Gta | 1 | 1 | All | 0 |
| ORF1ab/nsp15A1-B | 250 | L250G | CTA | GGT | 1 | 1 | All | 0 |
| ORF1ab/nsp15A1-B | 250 | L250C | CTA | TGC | 1 | 1 | All | 0 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 1 | 1 | AY.103 | 0.000006 |
| ORF1ab/nsp15A1-B | 250 | L250P | cTa | cCa | 1 | 1 | AY.110 | 0.000113 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 1 | 1 | AY.113 | 0.000142 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 1 | 1 | AY.117 | 0.000085 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 1 | 1 | AY.118 | 0.000063 |
| ORF1ab/nsp15A1-B | 250 | L250P | cTa | cCa | 1 | 1 | AY.119 | 0.000035 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 1 | 1 | AY.23 | 0.00007 |
| ORF1ab/nsp15A1-B | 250 | L250P | cTa | cCa | 1 | 1 | AY.25 | 0.000006 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 1 | 1 | AY.29 | 0.000016 |
| ORF1ab/nsp15A1-B | 250 | L250del1 | cTa | c-a | 1 | 1 | AY.3 | 0.00001 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 1 | 1 | AY.37 | 0.000316 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 1 | 1 | AY.37 | 0.000316 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 1 | 1 | AY.38 | 0.000499 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 1 | 1 | AY.4.2 | 0.000022 |
| ORF1ab/nsp15A1-B | 250 | L250P | cTa | cCa | 1 | 1 | AY.43 | 0.000004 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 1 | 1 | AY.46.5 | 0.000198 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 1 | 1 | AY.5.3 | 0.000337 |
| ORF1ab/nsp15A1-B | 250 | L250P | cTa | cCa | 1 | 1 | AY.50 | 0.000799 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 1 | 1 | AY.65 | 0.000533 |
| ORF1ab/nsp15A1-B | 250 | L250Q | cTa | cAa | 1 | 1 | AY.75.1 | 0.00018 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 1 | 1 | AY.75.1 | 0.00018 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 1 | 1 | AY.85 | 0.000427 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 1 | 1 | AY.98 | 0.000079 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 1 | 1 | AY.99.2 | 0.000092 |
| ORF1ab/nsp15A1-B | 250 | L250C | CTA | TGC | 1 | 1 | B | 0.000128 |
| ORF1ab/nsp15A1-B | 250 | L250Q | cTa | cAa | 1 | 1 | B.1.1 | 0.000018 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 1 | 1 | B.1.1.189 | 0.001513 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 1 | 1 | B.1.1.222 | 0.000204 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 1 | 1 | B.1.1.243 | 0.004082 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 1 | 1 | B.1.1.306 | 0.000438 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctT | 1 | 1 | B.1.1.372 | 0.000689 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 1 | 1 | B.1.1.389 | 0.006061 |
| ORF1ab/nsp15A1-B | 250 | L250V | Cta | Gta | 1 | 1 | B.1.1.416 | 0.000905 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 1 | 1 | B.1.1.420 | 0.001006 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 1 | 1 | B.1.1.51 | 0.001718 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 1 | 1 | B.1.1.519 | 0.00004 |
| ORF1ab/nsp15A1-B | 250 | L250Q | cTa | cAa | 1 | 1 | B.1.1.7 | 0.000001 |
| ORF1ab/nsp15A1-B | 250 | L250del1 | cTa | c-a | 1 | 1 | B.1.1.7 | 0.000001 |
| ORF1ab/nsp15A1-B | 250 | L250del | CTA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
| ORF1ab/nsp15A1-B | 250 | L250P | cTa | cCa | 1 | 1 | B.1.160 | 0.000031 |
| ORF1ab/nsp15A1-B | 250 | L250del | CTA | --- | 1 | 1 | B.1.177.68 | 0.015152 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 1 | 1 | B.1.234 | 0.000132 |
| ORF1ab/nsp15A1-B | 250 | L250Q | cTa | cAa | 1 | 1 | B.1.241 | 0.000812 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 1 | 1 | B.1.243 | 0.00007 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 1 | 1 | B.1.258.17 | 0.000104 |
| ORF1ab/nsp15A1-B | 250 | L250G | CTA | GGT | 1 | 1 | B.1.36.1 | 0.00114 |
| ORF1ab/nsp15A1-B | 250 | L250del | CTA | --- | 1 | 1 | B.1.375 | 0.00082 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 1 | 1 | B.1.399 | 0.001934 |
| ORF1ab/nsp15A1-B | 250 | L250del | CTA | --- | 1 | 1 | B.1.415 | 0.014286 |
| ORF1ab/nsp15A1-B | 250 | L250del | CTA | --- | 1 | 1 | B.1.416.1 | 0.001563 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 1 | 1 | B.1.427 | 0.00005 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctG | 1 | 1 | B.1.497 | 0.000315 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 1 | 1 | B.1.511 | 0.034483 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 1 | 1 | B.1.558 | 0.004566 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 1 | 1 | B.1.595.1 | 0.005848 |
| ORF1ab/nsp15A1-B | 250 | L250L | ctA | ctC | 1 | 1 | B.1.596 | 0.000087 |
| ORF1ab/nsp15A1-B | 250 | L250del | CTA | --- | 1 | 1 | B.1.620 | 0.000946 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 1 | 1 | B.1.621 | 0.000089 |
| ORF1ab/nsp15A1-B | 250 | L250del | CTA | --- | 1 | 1 | B.1.621.1 | 0.000506 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 1 | 1 | B.1.623 | 0.000536 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 1 | 1 | C.2.1 | 0.006667 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 1 | 1 | C.37 | 0.000116 |
| ORF1ab/nsp15A1-B | 250 | L250L | Cta | Tta | 1 | 1 | D.2 | 0.000075 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 1 | 1 | N.9 | 0.005952 |
| ORF1ab/nsp15A1-B | 250 | L250I | Cta | Ata | 1 | 1 | P.1.15 | 0.000232 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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