CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 243

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp15A1-B	243	S243N	S6695N	nonsyn	aGt	aAt	476	476	1	20347-20349
ORF1ab/nsp15A1-B	243	S243R	S6695R	nonsyn	agT	agG	440	420	0.954545	20347-20349
ORF1ab/nsp15A1-B	243	S243R	S6695R	nonsyn	Agt	Cgt	440	13	0.0295455	20347-20349
ORF1ab/nsp15A1-B	243	S243R	S6695R	nonsyn	agT	agA	440	6	0.0136364	20347-20349
ORF1ab/nsp15A1-B	243	S243R	S6695R	nonsyn	AgT	CgA	440	1	0.00227273	20347-20349
ORF1ab/nsp15A1-B	243	S243G	S6695G	nonsyn	Agt	Ggt	372	372	1	20347-20349
ORF1ab/nsp15A1-B	243	S243I	S6695I	nonsyn	aGt	aTt	335	334	0.997015	20347-20349
ORF1ab/nsp15A1-B	243	S243I	S6695I	nonsyn	aGT	aTC	335	1	0.00298507	20347-20349
ORF1ab/nsp15A1-B	243	S243S	S6695S	syn	agT	agC	199	199	1	20347-20349
ORF1ab/nsp15A1-B	243	S243del	S6695del	del	AGT	---	44	44	1	20347-20349
ORF1ab/nsp15A1-B	243	S243C	S6695C	nonsyn	Agt	Tgt	8	8	1	20347-20349
ORF1ab/nsp15A1-B	243	S243T	S6695T	nonsyn	aGt	aCt	7	7	1	20347-20349
ORF1ab/nsp15A1-B	243	S243del1	S6695del1	del	Agt	-gt	6	4	0.666667	20347-20349
ORF1ab/nsp15A1-B	243	S243del1	S6695del1	del	agT	ag-	6	2	0.333333	20347-20349
ORF1ab/nsp15A1-B	243	S243F	S6695F	nonsyn	AGt	TTt	5	5	1	20347-20349
ORF1ab/nsp15A1-B	243	S243V	S6695V	nonsyn	AGt	GTt	1	1	1	20347-20349
ORF1ab/nsp15A1-B	243	S243A	S6695A	nonsyn	AGt	GCt	1	1	1	20347-20349
ORF1ab/nsp15A1-B	243	S243E	S6695E	nonsyn	AGT	GAA	1	1	1	20347-20349

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	476	476	All	0.000091
ORF1ab/nsp15A1-B	243	S243R	agT	agG	420	440	All	0.00008
ORF1ab/nsp15A1-B	243	S243R	Agt	Cgt	13	440	All	0.000002
ORF1ab/nsp15A1-B	243	S243R	agT	agA	6	440	All	0.000001
ORF1ab/nsp15A1-B	243	S243R	AgT	CgA	1	440	All	0
ORF1ab/nsp15A1-B	243	S243R	agT	agG	382	382	AY.4	0.000595
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	372	372	All	0.000071
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	334	335	All	0.000064
ORF1ab/nsp15A1-B	243	S243I	aGT	aTC	1	335	All	0
ORF1ab/nsp15A1-B	243	S243S	agT	agC	199	199	All	0.000038
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	188	188	AY.44	0.001144
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	176	176	AY.44	0.001071
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	129	129	AY.4	0.000201
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	120	120	AY.41	0.035273
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	67	67	B.1.1.7	0.00006
ORF1ab/nsp15A1-B	243	S243S	agT	agC	66	66	B.1.160.27	1
ORF1ab/nsp15A1-B	243	S243del	AGT	---	44	44	All	0.000008
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	37	37	B.1.2	0.000326
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	36	36	B.1.617.2	0.000136
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	33	33	AY.62	0.014379
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	30	30	AY.4	0.000047
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	28	28	B.1.1.7	0.000025
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	19	19	B.1.234	0.002507
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	18	18	B.1.2	0.000158
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	18	18	P.1	0.000284
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	17	17	B.1.526	0.0004
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	16	16	AY.4.5	0.00172
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	16	16	B.1.177	0.000211
ORF1ab/nsp15A1-B	243	S243S	agT	agC	15	15	AY.20	0.000583
ORF1ab/nsp15A1-B	243	S243S	agT	agC	15	15	B.1.1.7	0.000013
ORF1ab/nsp15A1-B	243	S243R	Agt	Cgt	11	14	AY.25	0.000066
ORF1ab/nsp15A1-B	243	S243R	agT	agG	2	14	AY.25	0.000012
ORF1ab/nsp15A1-B	243	S243R	agT	agA	1	14	AY.25	0.000006
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	14	14	AY.54	0.001335
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	14	14	AY.7.1	0.001578
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	12	12	AE.7	1
ORF1ab/nsp15A1-B	243	S243S	agT	agC	12	12	AY.23	0.000837
ORF1ab/nsp15A1-B	243	S243S	agT	agC	12	12	B.1.617.2	0.000045
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	10	10	AY.103	0.000062
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	10	10	B.1.617.2	0.000038
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	9	9	AY.4.2	0.000195
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	9	9	B.1.617.2	0.000034
ORF1ab/nsp15A1-B	243	S243C	Agt	Tgt	8	8	All	0.000002
ORF1ab/nsp15A1-B	243	S243R	agT	agG	8	8	B.1.1.7	0.000007
ORF1ab/nsp15A1-B	243	S243T	aGt	aCt	7	7	All	0.000001
ORF1ab/nsp15A1-B	243	S243S	agT	agC	7	7	AY.4	0.000011
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	7	7	AY.4	0.000011
ORF1ab/nsp15A1-B	243	S243S	agT	agC	7	7	AY.5.3	0.002362
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	7	7	B.1.1.7	0.000006
ORF1ab/nsp15A1-B	243	S243del1	Agt	-gt	4	6	All	0.000001
ORF1ab/nsp15A1-B	243	S243del1	agT	ag-	2	6	All	0
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	6	6	AY.114	0.001387
ORF1ab/nsp15A1-B	243	S243R	agT	agG	6	6	AY.4.2	0.00013
ORF1ab/nsp15A1-B	243	S243S	agT	agC	6	6	B.1	0.000055
ORF1ab/nsp15A1-B	243	S243R	agT	agG	6	6	B.1.177.9	0.007989
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	6	6	B.1.429	0.000141
ORF1ab/nsp15A1-B	243	S243F	AGt	TTt	5	5	All	0.000001
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	5	5	AY.102	0.000133
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	5	5	AY.43	0.000022
ORF1ab/nsp15A1-B	243	S243del	AGT	---	5	5	AY.59	0.002648
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	5	5	AY.9	0.000338
ORF1ab/nsp15A1-B	243	S243del	AGT	---	5	5	B.1.1.7	0.000004
ORF1ab/nsp15A1-B	243	S243R	agT	agG	5	5	B.1.617.2	0.000019
ORF1ab/nsp15A1-B	243	S243del	AGT	---	4	4		0.222222
ORF1ab/nsp15A1-B	243	S243S	agT	agC	4	4	AY.103	0.000025
ORF1ab/nsp15A1-B	243	S243S	agT	agC	4	4	AY.14	0.000352
ORF1ab/nsp15A1-B	243	S243del	AGT	---	4	4	AY.43	0.000018
ORF1ab/nsp15A1-B	243	S243S	agT	agC	4	4	AY.43	0.000018
ORF1ab/nsp15A1-B	243	S243S	agT	agC	4	4	AY.6	0.000165
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	4	4	AY.99.2	0.000369
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	3	3	AY.103	0.000019
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	3	3	AY.3	0.00003
ORF1ab/nsp15A1-B	243	S243C	Agt	Tgt	3	3	AY.4	0.000005
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	3	3	AY.43	0.000013
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	3	3	AY.43	0.000013
ORF1ab/nsp15A1-B	243	S243S	agT	agC	3	3	AY.44	0.000018
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	3	3	AY.75	0.000168
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	3	3	AY.8	0.001818
ORF1ab/nsp15A1-B	243	S243del1	agT	ag-	2	3	B.1	0.000018
ORF1ab/nsp15A1-B	243	S243del1	Agt	-gt	1	3	B.1	0.000009
ORF1ab/nsp15A1-B	243	S243del	AGT	---	3	3	B.1.2	0.000026
ORF1ab/nsp15A1-B	243	S243S	agT	agC	3	3	B.1.2	0.000026
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	3	3	B.1.221	0.000213
ORF1ab/nsp15A1-B	243	S243del	AGT	---	3	3	B.1.258	0.0002
ORF1ab/nsp15A1-B	243	S243R	AgT	CgA	1	3	B.1.351	0.00003
ORF1ab/nsp15A1-B	243	S243R	agT	agA	1	3	B.1.351	0.00003
ORF1ab/nsp15A1-B	243	S243R	Agt	Cgt	1	3	B.1.351	0.00003
ORF1ab/nsp15A1-B	243	S243S	agT	agC	3	3	B.1.525	0.000339
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	3	3	B.1.526	0.000071
ORF1ab/nsp15A1-B	243	S243S	agT	agC	3	3	P.1.7	0.000958
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	2	2	AY.102	0.000053
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	2	2	AY.103	0.000012
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	2	2	AY.118	0.000125
ORF1ab/nsp15A1-B	243	S243S	agT	agC	2	2	AY.119	0.000071
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	2	2	AY.119	0.000071
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	2	2	AY.25	0.000012
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	2	2	AY.25	0.000012
ORF1ab/nsp15A1-B	243	S243del	AGT	---	2	2	AY.25	0.000012
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	2	2	AY.25	0.000012
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	2	2	AY.26	0.000057
ORF1ab/nsp15A1-B	243	S243S	agT	agC	2	2	AY.29	0.000032
ORF1ab/nsp15A1-B	243	S243S	agT	agC	2	2	AY.39	0.000049
ORF1ab/nsp15A1-B	243	S243R	agT	agG	2	2	AY.39	0.000049
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	2	2	AY.42	0.00008
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	2	2	B.1	0.000018
ORF1ab/nsp15A1-B	243	S243F	AGt	TTt	2	2	B.1.1	0.000036
ORF1ab/nsp15A1-B	243	S243S	agT	agC	2	2	B.1.1	0.000036
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	2	2	B.1.1.311	0.000716
ORF1ab/nsp15A1-B	243	S243C	Agt	Tgt	2	2	B.1.1.7	0.000002
ORF1ab/nsp15A1-B	243	S243R	agT	agG	2	2	B.1.126	0.002551
ORF1ab/nsp15A1-B	243	S243F	AGt	TTt	2	2	B.1.36.1	0.002281
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	2	2	B.1.367	0.001585
ORF1ab/nsp15A1-B	243	S243S	agT	agC	2	2	B.1.438.1	0.000215
ORF1ab/nsp15A1-B	243	S243del	AGT	---	2	2	B.1.517	0.000854
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	2	2	B.1.527	0.007407
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	2	2	D.2	0.00015
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	2	2	P.1.15	0.000465
ORF1ab/nsp15A1-B	243	S243del	AGT	---	2	2	P.1.15	0.000465
ORF1ab/nsp15A1-B	243	S243del	AGT	---	1	1	A	0.000387
ORF1ab/nsp15A1-B	243	S243del	AGT	---	1	1	A.2.4	0.003367
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	1	1	AE.8	0.000489
ORF1ab/nsp15A1-B	243	S243E	AGT	GAA	1	1	All	0
ORF1ab/nsp15A1-B	243	S243V	AGt	GTt	1	1	All	0
ORF1ab/nsp15A1-B	243	S243A	AGt	GCt	1	1	All	0
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	1	1	AY.1	0.000396
ORF1ab/nsp15A1-B	243	S243S	agT	agC	1	1	AY.100	0.000046
ORF1ab/nsp15A1-B	243	S243R	Agt	Cgt	1	1	AY.103	0.000006
ORF1ab/nsp15A1-B	243	S243T	aGt	aCt	1	1	AY.103	0.000006
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	1	1	AY.110	0.000113
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	1	1	AY.113	0.000142
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	1	1	AY.118	0.000063
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	1	1	AY.118	0.000063
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	1	1	AY.120	0.000037
ORF1ab/nsp15A1-B	243	S243R	agT	agG	1	1	AY.121	0.000135
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	1	1	AY.20	0.000039
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	1	1	AY.20	0.000039
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	1	1	AY.24	0.000431
ORF1ab/nsp15A1-B	243	S243S	agT	agC	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	243	S243T	aGt	aCt	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	243	S243S	agT	agC	1	1	AY.26	0.000028
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	1	1	AY.29	0.000016
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	1	1	AY.3	0.00001
ORF1ab/nsp15A1-B	243	S243S	agT	agC	1	1	AY.3	0.00001
ORF1ab/nsp15A1-B	243	S243del	AGT	---	1	1	AY.3.1	0.000085
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	1	1	AY.3.1	0.000085
ORF1ab/nsp15A1-B	243	S243S	agT	agC	1	1	AY.34.1	0.00051
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	1	1	AY.38	0.000499
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	1	1	AY.39	0.000025
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	1	1	AY.39	0.000025
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	1	1	AY.39.1	0.00004
ORF1ab/nsp15A1-B	243	S243R	agT	agG	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	243	S243I	aGT	aTC	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	243	S243S	agT	agC	1	1	AY.45	0.000122
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	1	1	AY.46.6	0.000072
ORF1ab/nsp15A1-B	243	S243R	agT	agG	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	243	S243A	AGt	GCt	1	1	AY.48	0.000465
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	1	1	AY.5	0.000021
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	1	1	AY.5	0.000021
ORF1ab/nsp15A1-B	243	S243R	agT	agG	1	1	AY.5	0.000021
ORF1ab/nsp15A1-B	243	S243C	Agt	Tgt	1	1	AY.55	0.000917
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	1	1	AY.58	0.000907
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	1	1	AY.61	0.000105
ORF1ab/nsp15A1-B	243	S243R	agT	agG	1	1	AY.63	0.000387
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	1	1	AY.87	0.000833
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	1	1	AY.9	0.000068
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	1	1	AY.93	0.000273
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	1	1	AY.98.1	0.000048
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	1	1	B	0.000128
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	243	S243R	agT	agA	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	243	S243C	Agt	Tgt	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	243	S243del1	Agt	-gt	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	243	S243T	aGt	aCt	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	243	S243S	agT	agC	1	1	B.1.1.214	0.000055
ORF1ab/nsp15A1-B	243	S243S	agT	agC	1	1	B.1.1.222	0.000204
ORF1ab/nsp15A1-B	243	S243S	agT	agC	1	1	B.1.1.263	0.001558
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	1	1	B.1.1.279	0.001121
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	1	1	B.1.1.307	0.002532
ORF1ab/nsp15A1-B	243	S243S	agT	agC	1	1	B.1.1.311	0.000358
ORF1ab/nsp15A1-B	243	S243R	agT	agA	1	1	B.1.1.33	0.000421
ORF1ab/nsp15A1-B	243	S243S	agT	agC	1	1	B.1.1.376	0.005952
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	1	1	B.1.1.389	0.006061
ORF1ab/nsp15A1-B	243	S243S	agT	agC	1	1	B.1.1.411	0.014706
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	1	1	B.1.1.445	0.037037
ORF1ab/nsp15A1-B	243	S243S	agT	agC	1	1	B.1.1.51	0.001718
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	1	1	B.1.1.519	0.00004
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	1	1	B.1.1.519	0.00004
ORF1ab/nsp15A1-B	243	S243T	aGt	aCt	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	243	S243E	AGT	GAA	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	243	S243del	AGT	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	243	S243S	agT	agC	1	1	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	1	1	B.1.160	0.000031
ORF1ab/nsp15A1-B	243	S243R	agT	agA	1	1	B.1.160.32	0.004292
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	1	1	B.1.177	0.000013
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	1	1	B.1.177.33	0.001645
ORF1ab/nsp15A1-B	243	S243del	AGT	---	1	1	B.1.177.43	0.001477
ORF1ab/nsp15A1-B	243	S243del	AGT	---	1	1	B.1.177.68	0.015152
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	1	1	B.1.177.86	0.000183
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	1	1	B.1.192	0.009259
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	243	S243S	agT	agC	1	1	B.1.232	0.000537
ORF1ab/nsp15A1-B	243	S243S	agT	agC	1	1	B.1.234	0.000132
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	1	1	B.1.258	0.000067
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	1	1	B.1.258.14	0.00098
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	1	1	B.1.276	0.016949
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	1	1	B.1.349	0.000715
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	243	S243del1	Agt	-gt	1	1	B.1.369	0.000285
ORF1ab/nsp15A1-B	243	S243T	aGt	aCt	1	1	B.1.369	0.000285
ORF1ab/nsp15A1-B	243	S243del	AGT	---	1	1	B.1.375	0.00082
ORF1ab/nsp15A1-B	243	S243S	agT	agC	1	1	B.1.397	0.004854
ORF1ab/nsp15A1-B	243	S243del	AGT	---	1	1	B.1.415	0.014286
ORF1ab/nsp15A1-B	243	S243del	AGT	---	1	1	B.1.416.1	0.001563
ORF1ab/nsp15A1-B	243	S243R	agT	agG	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	243	S243T	aGt	aCt	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	243	S243S	agT	agC	1	1	B.1.436	0.001029
ORF1ab/nsp15A1-B	243	S243del	AGT	---	1	1	B.1.438.1	0.000107
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	1	1	B.1.471	0.002732
ORF1ab/nsp15A1-B	243	S243F	AGt	TTt	1	1	B.1.497	0.000315
ORF1ab/nsp15A1-B	243	S243R	agT	agA	1	1	B.1.510	0.026316
ORF1ab/nsp15A1-B	243	S243del	AGT	---	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	243	S243S	agT	agC	1	1	B.1.617.1	0.000129
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	1	1	B.1.617.1	0.000129
ORF1ab/nsp15A1-B	243	S243T	aGt	aCt	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	243	S243C	Agt	Tgt	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	243	S243del	AGT	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	243	S243del	AGT	---	1	1	B.1.620	0.000946
ORF1ab/nsp15A1-B	243	S243del	AGT	---	1	1	B.1.621.1	0.000506
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	1	1	B.1.628	0.000352
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	1	1	C.35	0.000774
ORF1ab/nsp15A1-B	243	S243I	aGt	aTt	1	1	C.37	0.000116
ORF1ab/nsp15A1-B	243	S243R	agT	agG	1	1	C.37	0.000116
ORF1ab/nsp15A1-B	243	S243del1	Agt	-gt	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	243	S243V	AGt	GTt	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	243	S243G	Agt	Ggt	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	243	S243S	agT	agC	1	1	N.9	0.005952
ORF1ab/nsp15A1-B	243	S243N	aGt	aAt	1	1	P.1	0.000016
ORF1ab/nsp15A1-B	243	S243S	agT	agC	1	1	P.1	0.000016

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.