CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 234 | H234Y | H6686Y | nonsyn | Cat | Tat | 17303 | 17303 | 1 | 20320-20322 |
ORF1ab/nsp15A1-B | 234 | H234H | H6686H | syn | caT | caC | 623 | 623 | 1 | 20320-20322 |
ORF1ab/nsp15A1-B | 234 | H234R | H6686R | nonsyn | cAt | cGt | 111 | 110 | 0.990991 | 20320-20322 |
ORF1ab/nsp15A1-B | 234 | H234R | H6686R | nonsyn | cAT | cGC | 111 | 1 | 0.00900901 | 20320-20322 |
ORF1ab/nsp15A1-B | 234 | H234del | H6686del | del | CAT | --- | 59 | 59 | 1 | 20320-20322 |
ORF1ab/nsp15A1-B | 234 | H234L | H6686L | nonsyn | cAt | cTt | 18 | 18 | 1 | 20320-20322 |
ORF1ab/nsp15A1-B | 234 | H234P | H6686P | nonsyn | cAt | cCt | 6 | 6 | 1 | 20320-20322 |
ORF1ab/nsp15A1-B | 234 | H234N | H6686N | nonsyn | Cat | Aat | 5 | 5 | 1 | 20320-20322 |
ORF1ab/nsp15A1-B | 234 | H234D | H6686D | nonsyn | Cat | Gat | 4 | 4 | 1 | 20320-20322 |
ORF1ab/nsp15A1-B | 234 | H234Q | H6686Q | nonsyn | caT | caA | 3 | 2 | 0.666667 | 20320-20322 |
ORF1ab/nsp15A1-B | 234 | H234del2 | H6686del2 | del | cAT | c-- | 3 | 2 | 0.666667 | 20320-20322 |
ORF1ab/nsp15A1-B | 234 | H234Q | H6686Q | nonsyn | caT | caG | 3 | 1 | 0.333333 | 20320-20322 |
ORF1ab/nsp15A1-B | 234 | H234del2 | H6686del2 | del | CAt | --t | 3 | 1 | 0.333333 | 20320-20322 |
ORF1ab/nsp15A1-B | 234 | H234F | H6686F | nonsyn | CAt | TTt | 2 | 2 | 1 | 20320-20322 |
ORF1ab/nsp15A1-B | 234 | H234del1 | H6686del1 | del | caT | ca- | 1 | 1 | 1 | 20320-20322 |
ORF1ab/nsp15A1-B | 234 | H234A | H6686A | nonsyn | CAT | GCC | 1 | 1 | 1 | 20320-20322 |
ORF1ab/nsp15A1-B | 234 | H234T | H6686T | nonsyn | CAt | ACt | 1 | 1 | 1 | 20320-20322 |
ORF1ab/nsp15A1-B | 234 | H234X | H6686X | nonsyn | CaT | TaG | 1 | 1 | 1 | 20320-20322 |
ORF1ab/nsp15A1-B | 234 | H234S | H6686S | nonsyn | CAt | TCt | 1 | 1 | 1 | 20320-20322 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 17303 | 17303 | All | 0.003309 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 11175 | 11175 | B.1.617.2 | 0.042079 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2458 | 2458 | AY.30 | 0.972695 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 890 | 890 | AY.40 | 0.858245 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 648 | 648 | B.1.1.7 | 0.00058 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 623 | 623 | All | 0.000119 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 260 | 260 | B.1.177.83 | 0.385185 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 172 | 172 | AY.4 | 0.000268 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 110 | 111 | All | 0.000021 |
ORF1ab/nsp15A1-B | 234 | H234R | cAT | cGC | 1 | 111 | All | 0 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 98 | 98 | AY.43 | 0.000434 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 91 | 91 | B.1 | 0.000834 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 74 | 74 | B.1.2 | 0.000652 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 74 | 74 | B.1.429 | 0.001741 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 68 | 68 | AY.67 | 0.031569 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 60 | 60 | AY.44 | 0.000365 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 59 | 59 | All | 0.000011 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 56 | 56 | AY.4 | 0.000087 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 56 | 56 | AY.59 | 0.029661 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 54 | 54 | B.1.1.7 | 0.000048 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 53 | 53 | AY.31 | 0.981481 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 48 | 48 | AY.25 | 0.000289 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 47 | 47 | AY.103 | 0.000292 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 37 | 37 | AY.13 | 0.005956 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 37 | 37 | B.1.1 | 0.000671 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 36 | 36 | B.1 | 0.00033 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 35 | 35 | AY.56 | 0.05618 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 33 | 33 | AY.3 | 0.000328 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 26 | 26 | AY.16.1 | 0.012218 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 26 | 26 | AY.49 | 0.083067 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 26 | 26 | AY.75 | 0.001457 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 26 | 26 | B.1.1.311 | 0.009312 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 25 | 25 | AY.29 | 0.000394 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 24 | 24 | B.1.177 | 0.000316 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 24 | 24 | B.1.637 | 0.001754 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 24 | 24 | P.1 | 0.000378 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 21 | 21 | AY.120 | 0.000781 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 21 | 21 | AY.15 | 0.046667 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 19 | 19 | AY.47 | 0.000591 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 19 | 19 | AY.54 | 0.001812 |
ORF1ab/nsp15A1-B | 234 | H234L | cAt | cTt | 18 | 18 | All | 0.000003 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 18 | 18 | B.1.177 | 0.000237 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 18 | 18 | B.1.177.81 | 0.003408 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 18 | 18 | B.1.526 | 0.000423 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 18 | 18 | P.1.17 | 0.002912 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 17 | 17 | AY.85 | 0.007262 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 16 | 16 | AY.26 | 0.000453 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 15 | 15 | AY.119 | 0.00053 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 15 | 15 | AY.16 | 0.005695 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 15 | 15 | AY.26 | 0.000425 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 15 | 15 | AY.55 | 0.013761 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 15 | 15 | B.1.427 | 0.000757 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 14 | 14 | AY.100 | 0.000644 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 14 | 14 | AY.33 | 0.000935 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 14 | 14 | AY.9.2 | 0.000514 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 13 | 13 | AY.37 | 0.004109 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 13 | 13 | AY.42 | 0.000523 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 13 | 13 | AY.54 | 0.00124 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 13 | 13 | AY.58 | 0.011797 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 13 | 13 | AY.70 | 0.002711 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 13 | 13 | B.1.214 | 0.047619 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 13 | 13 | Q.1 | 0.001642 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 12 | 12 | AY.21 | 0.02277 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 12 | 12 | AY.41 | 0.003527 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 12 | 12 | AY.98.1 | 0.000581 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 11 | 11 | AY.23 | 0.000767 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 11 | 11 | AY.45 | 0.001339 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 11 | 11 | AY.53 | 0.003163 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 11 | 11 | AY.62 | 0.004793 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 11 | 11 | B.1.177.81 | 0.002083 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 10 | 10 | AY.28 | 0.018904 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 10 | 10 | AY.39 | 0.000247 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 10 | 10 | AY.86 | 0.008299 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 10 | 10 | B.1.1.519 | 0.000397 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp15A1-B | 234 | H234L | cAt | cTt | 10 | 10 | B.1.564 | 0.004259 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 9 | 9 | AY.24 | 0.003879 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 9 | 9 | AY.36 | 0.001334 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 9 | 9 | AY.48 | 0.004186 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 9 | 9 | AY.69 | 0.00168 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 9 | 9 | AY.91.1 | 0.036585 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 9 | 9 | B.1.160 | 0.000281 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 9 | 9 | B.1.177.60 | 0.001966 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 9 | 9 | B.1.351 | 0.000268 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 8 | 8 | AY.61 | 0.000838 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 8 | 8 | AY.9 | 0.000541 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 8 | 8 | AY.98 | 0.000632 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 7 | 7 | AY.117 | 0.000592 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 7 | 7 | AY.118 | 0.000439 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 7 | 7 | AY.121 | 0.000947 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 7 | 7 | AY.32 | 0.003727 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 7 | 7 | AY.5.4 | 0.001937 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 7 | 7 | AY.51 | 0.006364 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 7 | 7 | AY.64 | 0.004167 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 7 | 7 | AY.68 | 0.001916 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 7 | 7 | B | 0.000895 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 7 | 7 | B.1.1.519 | 0.000278 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 7 | 7 | B.1.351 | 0.000208 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 7 | 7 | B.1.595 | 0.001827 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 7 | 7 | B.1.617.1 | 0.000903 |
ORF1ab/nsp15A1-B | 234 | H234P | cAt | cCt | 6 | 6 | All | 0.000001 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 6 | 6 | AY.10 | 0.00318 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 6 | 6 | AY.74 | 0.000694 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 6 | 6 | AY.77 | 0.006764 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 5 | 5 | A.30 | 0.714286 |
ORF1ab/nsp15A1-B | 234 | H234N | Cat | Aat | 5 | 5 | All | 0.000001 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 5 | 5 | AY.19 | 0.005701 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 5 | 5 | AY.27 | 0.000324 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 5 | 5 | AY.46.5 | 0.000992 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 5 | 5 | AY.59 | 0.002648 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 5 | 5 | AY.79 | 0.006053 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 5 | 5 | B.1.356 | 0.008636 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 5 | 5 | B.1.466.2 | 0.001956 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 5 | 5 | Q.7 | 0.005556 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp15A1-B | 234 | H234D | Cat | Gat | 4 | 4 | All | 0.000001 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 4 | 4 | AY.104 | 0.007937 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 4 | 4 | AY.38 | 0.001997 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 4 | 4 | AY.50 | 0.003197 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 4 | 4 | AY.65 | 0.002132 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 4 | 4 | AY.70 | 0.000834 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 4 | 4 | AZ.3 | 0.006079 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 4 | 4 | B.1.1.301 | 0.004717 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 4 | 4 | B.1.1.319 | 0.070175 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 4 | 4 | B.1.177.73 | 0.002265 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 4 | 4 | B.1.258.17 | 0.000416 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 4 | 4 | B.1.351.2 | 0.00121 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 4 | 4 | B.1.459 | 0.016327 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 3 | 4 | B.1.617.2 | 0.000011 |
ORF1ab/nsp15A1-B | 234 | H234R | cAT | cGC | 1 | 4 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp15A1-B | 234 | H234Q | caT | caA | 2 | 3 | All | 0 |
ORF1ab/nsp15A1-B | 234 | H234del2 | cAT | c-- | 2 | 3 | All | 0 |
ORF1ab/nsp15A1-B | 234 | H234del2 | CAt | --t | 1 | 3 | All | 0 |
ORF1ab/nsp15A1-B | 234 | H234Q | caT | caG | 1 | 3 | All | 0 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 3 | 3 | AY.52 | 0.002443 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 3 | 3 | AY.73 | 0.001996 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp15A1-B | 234 | H234N | Cat | Aat | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 3 | 3 | B.1.177.77 | 0.002179 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 3 | 3 | B.1.239 | 0.003663 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 3 | 3 | B.1.346 | 0.003932 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 3 | 3 | B.1.499 | 0.003151 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 3 | 3 | B.1.558 | 0.013699 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 3 | 3 | C.8 | 0.013393 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp15A1-B | 234 | H234F | CAt | TTt | 2 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp15A1-B | 234 | H234Q | caT | caA | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | AY.78 | 0.003082 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | AY.87 | 0.001665 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | AY.90 | 0.001369 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | B.1.1.301 | 0.002358 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | B.1.1.374 | 0.004751 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | B.1.157 | 0.00597 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp15A1-B | 234 | H234L | cAt | cTt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 2 | 2 | B.1.258.3 | 0.00335 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp15A1-B | 234 | H234N | Cat | Aat | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 2 | 2 | B.1.599 | 0.007299 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | A | 0.000387 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | AC.1 | 0.037037 |
ORF1ab/nsp15A1-B | 234 | H234A | CAT | GCC | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 234 | H234T | CAt | ACt | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 234 | H234del1 | caT | ca- | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 234 | H234S | CAt | TCt | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 234 | H234X | CaT | TaG | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp15A1-B | 234 | H234P | cAt | cCt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp15A1-B | 234 | H234del2 | cAT | c-- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 234 | H234L | cAt | cTt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp15A1-B | 234 | H234P | cAt | cCt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp15A1-B | 234 | H234L | cAt | cTt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp15A1-B | 234 | H234P | cAt | cCt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 234 | H234D | Cat | Gat | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 234 | H234L | cAt | cTt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp15A1-B | 234 | H234L | cAt | cTt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp15A1-B | 234 | H234P | cAt | cCt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp15A1-B | 234 | H234X | CaT | TaG | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp15A1-B | 234 | H234D | Cat | Gat | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 234 | H234L | cAt | cTt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.1.147 | 0.090909 |
ORF1ab/nsp15A1-B | 234 | H234F | CAt | TTt | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.1.257 | 0.009709 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.1.320 | 0.018182 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp15A1-B | 234 | H234P | cAt | cCt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 234 | H234S | CAt | TCt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.1.97 | 0.029412 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.124 | 0.007812 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.134 | 0.005464 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp15A1-B | 234 | H234D | Cat | Gat | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp15A1-B | 234 | H234del2 | CAt | --t | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp15A1-B | 234 | H234del1 | caT | ca- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp15A1-B | 234 | H234T | CAt | ACt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 234 | H234D | Cat | Gat | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp15A1-B | 234 | H234A | CAT | GCC | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp15A1-B | 234 | H234L | cAt | cTt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp15A1-B | 234 | H234F | CAt | TTt | 1 | 1 | B.1.446 | 0.02 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp15A1-B | 234 | H234Q | caT | caG | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp15A1-B | 234 | H234del2 | cAT | c-- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.610 | 0.003546 |
ORF1ab/nsp15A1-B | 234 | H234P | cAt | cCt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.4.6 | 0.016667 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp15A1-B | 234 | H234del | CAT | --- | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp15A1-B | 234 | H234R | cAt | cGt | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp15A1-B | 234 | H234H | caT | caC | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp15A1-B | 234 | H234Y | Cat | Tat | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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