CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 233

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp15A1-B	233	E233G	E6685G	nonsyn	gAa	gGa	393	392	0.997455	20317-20319
ORF1ab/nsp15A1-B	233	E233G	E6685G	nonsyn	gAA	gGC	393	1	0.00254453	20317-20319
ORF1ab/nsp15A1-B	233	E233K	E6685K	nonsyn	Gaa	Aaa	192	192	1	20317-20319
ORF1ab/nsp15A1-B	233	E233A	E6685A	nonsyn	gAa	gCa	91	91	1	20317-20319
ORF1ab/nsp15A1-B	233	E233del	E6685del	del	GAA	---	62	62	1	20317-20319
ORF1ab/nsp15A1-B	233	E233E	E6685E	syn	gaA	gaG	44	44	1	20317-20319
ORF1ab/nsp15A1-B	233	E233X	E6685X	nonsyn	Gaa	Taa	26	25	0.961538	20317-20319
ORF1ab/nsp15A1-B	233	E233X	E6685X	nonsyn	GAa	TGa	26	1	0.0384615	20317-20319
ORF1ab/nsp15A1-B	233	E233Q	E6685Q	nonsyn	Gaa	Caa	22	22	1	20317-20319
ORF1ab/nsp15A1-B	233	E233D	E6685D	nonsyn	gaA	gaC	19	15	0.789474	20317-20319
ORF1ab/nsp15A1-B	233	E233D	E6685D	nonsyn	gaA	gaT	19	4	0.210526	20317-20319
ORF1ab/nsp15A1-B	233	E233V	E6685V	nonsyn	gAa	gTa	17	16	0.941176	20317-20319
ORF1ab/nsp15A1-B	233	E233V	E6685V	nonsyn	gAA	gTT	17	1	0.0588235	20317-20319
ORF1ab/nsp15A1-B	233	E233R	E6685R	nonsyn	GAa	AGa	5	5	1	20317-20319
ORF1ab/nsp15A1-B	233	E233Y	E6685Y	nonsyn	GaA	TaT	3	3	1	20317-20319
ORF1ab/nsp15A1-B	233	E233del2	E6685del2	del	GAa	--a	1	1	1	20317-20319
ORF1ab/nsp15A1-B	233	E233I	E6685I	nonsyn	GAA	ATT	1	1	1	20317-20319

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	392	393	All	0.000075
ORF1ab/nsp15A1-B	233	E233G	gAA	gGC	1	393	All	0
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	192	192	All	0.000037
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	113	113	B.1.1.7	0.000101
ORF1ab/nsp15A1-B	233	E233A	gAa	gCa	91	91	All	0.000017
ORF1ab/nsp15A1-B	233	E233del	GAA	---	62	62	All	0.000012
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	50	50	B.1.1.7	0.000045
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	44	44	All	0.000008
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	44	44	B.1.1.53	0.60274
ORF1ab/nsp15A1-B	233	E233A	gAa	gCa	40	40	B.1.1.7	0.000036
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	35	35	B.1.258.17	0.003639
ORF1ab/nsp15A1-B	233	E233X	Gaa	Taa	25	26	All	0.000005
ORF1ab/nsp15A1-B	233	E233X	GAa	TGa	1	26	All	0
ORF1ab/nsp15A1-B	233	E233Q	Gaa	Caa	22	22	All	0.000004
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	22	22	AY.39.1	0.000871
ORF1ab/nsp15A1-B	233	E233D	gaA	gaC	15	19	All	0.000003
ORF1ab/nsp15A1-B	233	E233D	gaA	gaT	4	19	All	0.000001
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	18	18	B.1	0.000165
ORF1ab/nsp15A1-B	233	E233V	gAa	gTa	16	17	All	0.000003
ORF1ab/nsp15A1-B	233	E233V	gAA	gTT	1	17	All	0
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	17	17	AY.4	0.000026
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	15	15	B.1.630	0.078534
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	14	14	AY.4	0.000022
ORF1ab/nsp15A1-B	233	E233A	gAa	gCa	13	13	AY.4	0.00002
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	12	13	B.1.351	0.000357
ORF1ab/nsp15A1-B	233	E233G	gAA	gGC	1	13	B.1.351	0.00003
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	11	11	AY.103	0.000068
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	11	11	AY.44	0.000067
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	10	10	B.1.617.2	0.000038
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	9	9	AY.103	0.000056
ORF1ab/nsp15A1-B	233	E233Q	Gaa	Caa	9	9	AY.43	0.00004
ORF1ab/nsp15A1-B	233	E233del	GAA	---	9	9	B.1.1.7	0.000008
ORF1ab/nsp15A1-B	233	E233A	gAa	gCa	8	8	AY.103	0.00005
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	8	8	B.1.177.81	0.001515
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	8	8	B.1.595	0.002088
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	7	7	AY.3	0.00007
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	7	7	B.1.1	0.000127
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	7	7	B.1.1.51	0.012027
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	6	6	AY.43	0.000027
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	6	6	AY.46.6	0.000433
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	6	6	AY.9.2	0.00022
ORF1ab/nsp15A1-B	233	E233A	gAa	gCa	6	6	B.1.526	0.000141
ORF1ab/nsp15A1-B	233	E233R	GAa	AGa	5	5	All	0.000001
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	5	5	AY.25	0.00003
ORF1ab/nsp15A1-B	233	E233D	gaA	gaC	5	5	AY.4	0.000008
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	5	5	AY.43	0.000022
ORF1ab/nsp15A1-B	233	E233del	GAA	---	5	5	AY.59	0.002648
ORF1ab/nsp15A1-B	233	E233del	GAA	---	5	5	B.1.2	0.000044
ORF1ab/nsp15A1-B	233	E233Q	Gaa	Caa	5	5	B.1.617.2	0.000019
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	5	5	B.1.617.2	0.000019
ORF1ab/nsp15A1-B	233	E233del	GAA	---	4	4		0.222222
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	4	4	AY.102	0.000106
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	4	4	AY.118	0.000251
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	4	4	AY.44	0.000024
ORF1ab/nsp15A1-B	233	E233X	Gaa	Taa	4	4	B.1	0.000037
ORF1ab/nsp15A1-B	233	E233A	gAa	gCa	4	4	B.1.1.28	0.001245
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	4	4	B.1.1.519	0.000159
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	4	4	B.1.1.7	0.000004
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	4	4	B.1.436	0.004115
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	4	4	B.1.617.1	0.000516
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	4	4	P.1.14	0.000191
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	4	4	Q.3	0.00058
ORF1ab/nsp15A1-B	233	E233Y	GaA	TaT	3	3	All	0.000001
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	3	3	AY.102	0.00008
ORF1ab/nsp15A1-B	233	E233D	gaA	gaC	3	3	AY.20	0.000117
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	3	3	AY.33	0.0002
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	3	3	AY.37	0.000948
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	3	3	AY.4	0.000005
ORF1ab/nsp15A1-B	233	E233A	gAa	gCa	3	3	AY.43	0.000013
ORF1ab/nsp15A1-B	233	E233del	GAA	---	3	3	AY.43	0.000013
ORF1ab/nsp15A1-B	233	E233A	gAa	gCa	3	3	B.1	0.000027
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	3	3	B.1.1.519	0.000119
ORF1ab/nsp15A1-B	233	E233V	gAa	gTa	3	3	B.1.1.7	0.000003
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	3	3	B.1.177	0.00004
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	3	3	B.1.177.60	0.000655
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	3	3	B.1.2	0.000026
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	3	3	B.1.400	0.001287
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	3	3	B.1.466.2	0.001174
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	3	3	B.1.617.2	0.000011
ORF1ab/nsp15A1-B	233	E233del	GAA	---	3	3	B.1.617.2	0.000011
ORF1ab/nsp15A1-B	233	E233A	gAa	gCa	3	3	B.1.617.2	0.000011
ORF1ab/nsp15A1-B	233	E233V	gAa	gTa	3	3	B.1.617.2	0.000011
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	3	3	P.1	0.000047
ORF1ab/nsp15A1-B	233	E233del	GAA	---	3	3	P.1.15	0.000697
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	2	2	A	0.000774
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	2	2	AY.100	0.000092
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	2	2	AY.23	0.000139
ORF1ab/nsp15A1-B	233	E233del	GAA	---	2	2	AY.25	0.000012
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	2	2	AY.25	0.000012
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	2	2	AY.26	0.000057
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	2	2	AY.34	0.000194
ORF1ab/nsp15A1-B	233	E233A	gAa	gCa	2	2	AY.44	0.000012
ORF1ab/nsp15A1-B	233	E233D	gaA	gaC	2	2	AY.44	0.000012
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	2	2	AY.46.4	0.000329
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	2	2	AY.5	0.000041
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	2	2	AY.84	0.000875
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	2	2	AY.92	0.000575
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	2	2	AY.92	0.000575
ORF1ab/nsp15A1-B	233	E233del	GAA	---	2	2	B.1	0.000018
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	2	2	B.1	0.000018
ORF1ab/nsp15A1-B	233	E233del	GAA	---	2	2	B.1.1	0.000036
ORF1ab/nsp15A1-B	233	E233X	Gaa	Taa	2	2	B.1.1.7	0.000002
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	2	2	B.1.1.70	0.000682
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	2	2	B.1.160	0.000062
ORF1ab/nsp15A1-B	233	E233del	GAA	---	2	2	B.1.160	0.000062
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	2	2	B.1.177	0.000026
ORF1ab/nsp15A1-B	233	E233del	GAA	---	2	2	B.1.177.44	0.001038
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	2	2	B.1.2	0.000018
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	2	2	B.1.214.2	0.001199
ORF1ab/nsp15A1-B	233	E233del	GAA	---	2	2	B.1.258	0.000133
ORF1ab/nsp15A1-B	233	E233R	GAa	AGa	2	2	B.1.351	0.000059
ORF1ab/nsp15A1-B	233	E233X	GAa	TGa	1	2	B.1.351	0.00003
ORF1ab/nsp15A1-B	233	E233X	Gaa	Taa	1	2	B.1.351	0.00003
ORF1ab/nsp15A1-B	233	E233del	GAA	---	2	2	B.1.517	0.000854
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	2	2	B.1.524	0.002813
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	2	2	B.1.526	0.000047
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	2	2	B.1.526	0.000047
ORF1ab/nsp15A1-B	233	E233X	Gaa	Taa	2	2	B.6	0.00182
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	2	2	P.1	0.000032
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	2	2	P.2	0.000373
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	2	2	Q.8	0.00033
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	1	1	A	0.000387
ORF1ab/nsp15A1-B	233	E233X	Gaa	Taa	1	1	A	0.000387
ORF1ab/nsp15A1-B	233	E233X	Gaa	Taa	1	1	A.2	0.000662
ORF1ab/nsp15A1-B	233	E233del	GAA	---	1	1	A.2.4	0.003367
ORF1ab/nsp15A1-B	233	E233A	gAa	gCa	1	1	A.2.5	0.000499
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	1	1	A.23.1	0.000704
ORF1ab/nsp15A1-B	233	E233I	GAA	ATT	1	1	All	0
ORF1ab/nsp15A1-B	233	E233del2	GAa	--a	1	1	All	0
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	1	1	AT.1	0.005128
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	1	1	AY.100	0.000046
ORF1ab/nsp15A1-B	233	E233A	gAa	gCa	1	1	AY.102	0.000027
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	1	1	AY.103	0.000006
ORF1ab/nsp15A1-B	233	E233I	GAA	ATT	1	1	AY.103	0.000006
ORF1ab/nsp15A1-B	233	E233V	gAa	gTa	1	1	AY.103	0.000006
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	1	1	AY.119	0.000035
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	1	1	AY.120.1	0.000321
ORF1ab/nsp15A1-B	233	E233R	GAa	AGa	1	1	AY.120.1	0.000321
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	1	1	AY.13	0.000161
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	1	1	AY.2	0.000356
ORF1ab/nsp15A1-B	233	E233del	GAA	---	1	1	AY.20	0.000039
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	233	E233X	Gaa	Taa	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	233	E233Q	Gaa	Caa	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	1	1	AY.26	0.000028
ORF1ab/nsp15A1-B	233	E233A	gAa	gCa	1	1	AY.26	0.000028
ORF1ab/nsp15A1-B	233	E233D	gaA	gaC	1	1	AY.3.1	0.000085
ORF1ab/nsp15A1-B	233	E233del	GAA	---	1	1	AY.3.1	0.000085
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	1	1	AY.3.1	0.000085
ORF1ab/nsp15A1-B	233	E233X	Gaa	Taa	1	1	AY.33	0.000067
ORF1ab/nsp15A1-B	233	E233A	gAa	gCa	1	1	AY.34	0.000097
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	1	1	AY.39	0.000025
ORF1ab/nsp15A1-B	233	E233Q	Gaa	Caa	1	1	AY.39	0.000025
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	1	1	AY.39	0.000025
ORF1ab/nsp15A1-B	233	E233X	Gaa	Taa	1	1	AY.4	0.000002
ORF1ab/nsp15A1-B	233	E233Q	Gaa	Caa	1	1	AY.4	0.000002
ORF1ab/nsp15A1-B	233	E233V	gAa	gTa	1	1	AY.4.3	0.000842
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	1	1	AY.42	0.00004
ORF1ab/nsp15A1-B	233	E233X	Gaa	Taa	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	233	E233D	gaA	gaC	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	233	E233X	Gaa	Taa	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	1	1	AY.45	0.000122
ORF1ab/nsp15A1-B	233	E233X	Gaa	Taa	1	1	AY.46	0.000104
ORF1ab/nsp15A1-B	233	E233A	gAa	gCa	1	1	AY.46	0.000104
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	1	1	AY.46.2	0.000635
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	1	1	AY.46.4	0.000165
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	1	1	AY.5	0.000021
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	1	1	AY.5.4	0.000277
ORF1ab/nsp15A1-B	233	E233X	Gaa	Taa	1	1	AY.52	0.000814
ORF1ab/nsp15A1-B	233	E233R	GAa	AGa	1	1	AY.59	0.00053
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	1	1	AY.59	0.00053
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	1	1	AY.59	0.00053
ORF1ab/nsp15A1-B	233	E233A	gAa	gCa	1	1	AY.6	0.000041
ORF1ab/nsp15A1-B	233	E233X	Gaa	Taa	1	1	AY.69	0.000187
ORF1ab/nsp15A1-B	233	E233V	gAa	gTa	1	1	AY.75	0.000056
ORF1ab/nsp15A1-B	233	E233A	gAa	gCa	1	1	AY.75	0.000056
ORF1ab/nsp15A1-B	233	E233A	gAa	gCa	1	1	AY.75.1	0.00018
ORF1ab/nsp15A1-B	233	E233Q	Gaa	Caa	1	1	AY.84	0.000437
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	1	1	AY.9	0.000068
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	1	1	AY.9.1	0.000084
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	1	1	AY.99.2	0.000092
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	233	E233D	gaA	gaC	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	233	E233Y	GaA	TaT	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	233	E233V	gAA	gTT	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	233	E233V	gAa	gTa	1	1	B.1.1.1	0.000327
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	1	1	B.1.1.139	0.022727
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	1	1	B.1.1.222	0.000204
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	1	1	B.1.1.28	0.000311
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	1	1	B.1.1.306	0.000438
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	1	1	B.1.1.348	0.000796
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	1	1	B.1.1.448	0.002033
ORF1ab/nsp15A1-B	233	E233Q	Gaa	Caa	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	233	E233D	gaA	gaT	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	233	E233del	GAA	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	233	E233del	GAA	---	1	1	B.1.177	0.000013
ORF1ab/nsp15A1-B	233	E233X	Gaa	Taa	1	1	B.1.177	0.000013
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	1	1	B.1.177	0.000013
ORF1ab/nsp15A1-B	233	E233V	gAa	gTa	1	1	B.1.177	0.000013
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	1	1	B.1.177.62	0.001192
ORF1ab/nsp15A1-B	233	E233del	GAA	---	1	1	B.1.177.68	0.015152
ORF1ab/nsp15A1-B	233	E233del	GAA	---	1	1	B.1.177.81	0.000189
ORF1ab/nsp15A1-B	233	E233V	gAa	gTa	1	1	B.1.177.87	0.000728
ORF1ab/nsp15A1-B	233	E233Q	Gaa	Caa	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	233	E233R	GAa	AGa	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	1	1	B.1.240	0.000216
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	1	1	B.1.241	0.000812
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	1	1	B.1.258	0.000067
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	1	1	B.1.344	0.008197
ORF1ab/nsp15A1-B	233	E233D	gaA	gaC	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	1	1	B.1.351.2	0.000303
ORF1ab/nsp15A1-B	233	E233A	gAa	gCa	1	1	B.1.351.5	0.0006
ORF1ab/nsp15A1-B	233	E233del	GAA	---	1	1	B.1.356	0.001727
ORF1ab/nsp15A1-B	233	E233Y	GaA	TaT	1	1	B.1.36.1	0.00114
ORF1ab/nsp15A1-B	233	E233del	GAA	---	1	1	B.1.375	0.00082
ORF1ab/nsp15A1-B	233	E233V	gAa	gTa	1	1	B.1.395	0.007042
ORF1ab/nsp15A1-B	233	E233D	gaA	gaT	1	1	B.1.399	0.001934
ORF1ab/nsp15A1-B	233	E233X	Gaa	Taa	1	1	B.1.416	0.001269
ORF1ab/nsp15A1-B	233	E233del	GAA	---	1	1	B.1.416.1	0.001563
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	1	1	B.1.427	0.00005
ORF1ab/nsp15A1-B	233	E233D	gaA	gaT	1	1	B.1.427	0.00005
ORF1ab/nsp15A1-B	233	E233Q	Gaa	Caa	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	233	E233D	gaA	gaT	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	233	E233V	gAa	gTa	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	233	E233del	GAA	---	1	1	B.1.438.1	0.000107
ORF1ab/nsp15A1-B	233	E233V	gAa	gTa	1	1	B.1.438.1	0.000107
ORF1ab/nsp15A1-B	233	E233X	Gaa	Taa	1	1	B.1.446	0.02
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	1	1	B.1.468	0.005714
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	1	1	B.1.485	0.014925
ORF1ab/nsp15A1-B	233	E233Y	GaA	TaT	1	1	B.1.497	0.000315
ORF1ab/nsp15A1-B	233	E233D	gaA	gaC	1	1	B.1.497	0.000315
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	1	1	B.1.497	0.000315
ORF1ab/nsp15A1-B	233	E233del2	GAa	--a	1	1	B.1.525	0.000113
ORF1ab/nsp15A1-B	233	E233del	GAA	---	1	1	B.1.564	0.000426
ORF1ab/nsp15A1-B	233	E233del	GAA	---	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	233	E233X	Gaa	Taa	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	1	1	B.1.617.1	0.000129
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	1	1	B.1.619	0.000871
ORF1ab/nsp15A1-B	233	E233del	GAA	---	1	1	B.1.620	0.000946
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	1	1	B.1.621	0.000089
ORF1ab/nsp15A1-B	233	E233del	GAA	---	1	1	B.1.621.1	0.000506
ORF1ab/nsp15A1-B	233	E233X	Gaa	Taa	1	1	B.1.623	0.000536
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	1	1	B.1.628	0.000352
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	1	1	B.1.8	0.001972
ORF1ab/nsp15A1-B	233	E233V	gAa	gTa	1	1	C.37	0.000116
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	1	1	C.37	0.000116
ORF1ab/nsp15A1-B	233	E233G	gAa	gGa	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	233	E233del	GAA	---	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	233	E233X	Gaa	Taa	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	233	E233E	gaA	gaG	1	1	P.1	0.000016
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	1	1	P.1.10.1	0.00813
ORF1ab/nsp15A1-B	233	E233K	Gaa	Aaa	1	1	P.1.12	0.000484
ORF1ab/nsp15A1-B	233	E233Q	Gaa	Caa	1	1	Q.3	0.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.