CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 233

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B233E233GE6685GnonsyngAagGa3933920.99745520317-20319
ORF1ab/nsp15A1-B233E233GE6685GnonsyngAAgGC39310.0025445320317-20319
ORF1ab/nsp15A1-B233E233KE6685KnonsynGaaAaa192192120317-20319
ORF1ab/nsp15A1-B233E233AE6685AnonsyngAagCa9191120317-20319
ORF1ab/nsp15A1-B233E233delE6685deldelGAA---6262120317-20319
ORF1ab/nsp15A1-B233E233EE6685EsyngaAgaG4444120317-20319
ORF1ab/nsp15A1-B233E233XE6685XnonsynGaaTaa26250.96153820317-20319
ORF1ab/nsp15A1-B233E233XE6685XnonsynGAaTGa2610.038461520317-20319
ORF1ab/nsp15A1-B233E233QE6685QnonsynGaaCaa2222120317-20319
ORF1ab/nsp15A1-B233E233DE6685DnonsyngaAgaC19150.78947420317-20319
ORF1ab/nsp15A1-B233E233DE6685DnonsyngaAgaT1940.21052620317-20319
ORF1ab/nsp15A1-B233E233VE6685VnonsyngAagTa17160.94117620317-20319
ORF1ab/nsp15A1-B233E233VE6685VnonsyngAAgTT1710.058823520317-20319
ORF1ab/nsp15A1-B233E233RE6685RnonsynGAaAGa55120317-20319
ORF1ab/nsp15A1-B233E233YE6685YnonsynGaATaT33120317-20319
ORF1ab/nsp15A1-B233E233del2E6685del2delGAa--a11120317-20319
ORF1ab/nsp15A1-B233E233IE6685InonsynGAAATT11120317-20319

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B233E233GgAagGa392393All0.000075
ORF1ab/nsp15A1-B233E233GgAAgGC1393All0
ORF1ab/nsp15A1-B233E233KGaaAaa192192All0.000037
ORF1ab/nsp15A1-B233E233GgAagGa113113B.1.1.70.000101
ORF1ab/nsp15A1-B233E233AgAagCa9191All0.000017
ORF1ab/nsp15A1-B233E233delGAA---6262All0.000012
ORF1ab/nsp15A1-B233E233KGaaAaa5050B.1.1.70.000045
ORF1ab/nsp15A1-B233E233EgaAgaG4444All0.000008
ORF1ab/nsp15A1-B233E233GgAagGa4444B.1.1.530.60274
ORF1ab/nsp15A1-B233E233AgAagCa4040B.1.1.70.000036
ORF1ab/nsp15A1-B233E233GgAagGa3535B.1.258.170.003639
ORF1ab/nsp15A1-B233E233XGaaTaa2526All0.000005
ORF1ab/nsp15A1-B233E233XGAaTGa126All0
ORF1ab/nsp15A1-B233E233QGaaCaa2222All0.000004
ORF1ab/nsp15A1-B233E233KGaaAaa2222AY.39.10.000871
ORF1ab/nsp15A1-B233E233DgaAgaC1519All0.000003
ORF1ab/nsp15A1-B233E233DgaAgaT419All0.000001
ORF1ab/nsp15A1-B233E233GgAagGa1818B.10.000165
ORF1ab/nsp15A1-B233E233VgAagTa1617All0.000003
ORF1ab/nsp15A1-B233E233VgAAgTT117All0
ORF1ab/nsp15A1-B233E233KGaaAaa1717AY.40.000026
ORF1ab/nsp15A1-B233E233GgAagGa1515B.1.6300.078534
ORF1ab/nsp15A1-B233E233GgAagGa1414AY.40.000022
ORF1ab/nsp15A1-B233E233AgAagCa1313AY.40.00002
ORF1ab/nsp15A1-B233E233GgAagGa1213B.1.3510.000357
ORF1ab/nsp15A1-B233E233GgAAgGC113B.1.3510.00003
ORF1ab/nsp15A1-B233E233KGaaAaa1111AY.1030.000068
ORF1ab/nsp15A1-B233E233KGaaAaa1111AY.440.000067
ORF1ab/nsp15A1-B233E233GgAagGa1010B.1.617.20.000038
ORF1ab/nsp15A1-B233E233GgAagGa99AY.1030.000056
ORF1ab/nsp15A1-B233E233QGaaCaa99AY.430.00004
ORF1ab/nsp15A1-B233E233delGAA---99B.1.1.70.000008
ORF1ab/nsp15A1-B233E233AgAagCa88AY.1030.00005
ORF1ab/nsp15A1-B233E233GgAagGa88B.1.177.810.001515
ORF1ab/nsp15A1-B233E233GgAagGa88B.1.5950.002088
ORF1ab/nsp15A1-B233E233KGaaAaa77AY.30.00007
ORF1ab/nsp15A1-B233E233GgAagGa77B.1.10.000127
ORF1ab/nsp15A1-B233E233EgaAgaG77B.1.1.510.012027
ORF1ab/nsp15A1-B233E233GgAagGa66AY.430.000027
ORF1ab/nsp15A1-B233E233GgAagGa66AY.46.60.000433
ORF1ab/nsp15A1-B233E233GgAagGa66AY.9.20.00022
ORF1ab/nsp15A1-B233E233AgAagCa66B.1.5260.000141
ORF1ab/nsp15A1-B233E233RGAaAGa55All0.000001
ORF1ab/nsp15A1-B233E233KGaaAaa55AY.250.00003
ORF1ab/nsp15A1-B233E233DgaAgaC55AY.40.000008
ORF1ab/nsp15A1-B233E233KGaaAaa55AY.430.000022
ORF1ab/nsp15A1-B233E233delGAA---55AY.590.002648
ORF1ab/nsp15A1-B233E233delGAA---55B.1.20.000044
ORF1ab/nsp15A1-B233E233QGaaCaa55B.1.617.20.000019
ORF1ab/nsp15A1-B233E233KGaaAaa55B.1.617.20.000019
ORF1ab/nsp15A1-B233E233delGAA---440.222222
ORF1ab/nsp15A1-B233E233EgaAgaG44AY.1020.000106
ORF1ab/nsp15A1-B233E233GgAagGa44AY.1180.000251
ORF1ab/nsp15A1-B233E233GgAagGa44AY.440.000024
ORF1ab/nsp15A1-B233E233XGaaTaa44B.10.000037
ORF1ab/nsp15A1-B233E233AgAagCa44B.1.1.280.001245
ORF1ab/nsp15A1-B233E233GgAagGa44B.1.1.5190.000159
ORF1ab/nsp15A1-B233E233EgaAgaG44B.1.1.70.000004
ORF1ab/nsp15A1-B233E233GgAagGa44B.1.4360.004115
ORF1ab/nsp15A1-B233E233KGaaAaa44B.1.617.10.000516
ORF1ab/nsp15A1-B233E233EgaAgaG44P.1.140.000191
ORF1ab/nsp15A1-B233E233KGaaAaa44Q.30.00058
ORF1ab/nsp15A1-B233E233YGaATaT33All0.000001
ORF1ab/nsp15A1-B233E233GgAagGa33AY.1020.00008
ORF1ab/nsp15A1-B233E233DgaAgaC33AY.200.000117
ORF1ab/nsp15A1-B233E233KGaaAaa33AY.330.0002
ORF1ab/nsp15A1-B233E233KGaaAaa33AY.370.000948
ORF1ab/nsp15A1-B233E233EgaAgaG33AY.40.000005
ORF1ab/nsp15A1-B233E233AgAagCa33AY.430.000013
ORF1ab/nsp15A1-B233E233delGAA---33AY.430.000013
ORF1ab/nsp15A1-B233E233AgAagCa33B.10.000027
ORF1ab/nsp15A1-B233E233KGaaAaa33B.1.1.5190.000119
ORF1ab/nsp15A1-B233E233VgAagTa33B.1.1.70.000003
ORF1ab/nsp15A1-B233E233KGaaAaa33B.1.1770.00004
ORF1ab/nsp15A1-B233E233GgAagGa33B.1.177.600.000655
ORF1ab/nsp15A1-B233E233KGaaAaa33B.1.20.000026
ORF1ab/nsp15A1-B233E233GgAagGa33B.1.4000.001287
ORF1ab/nsp15A1-B233E233GgAagGa33B.1.466.20.001174
ORF1ab/nsp15A1-B233E233EgaAgaG33B.1.617.20.000011
ORF1ab/nsp15A1-B233E233delGAA---33B.1.617.20.000011
ORF1ab/nsp15A1-B233E233AgAagCa33B.1.617.20.000011
ORF1ab/nsp15A1-B233E233VgAagTa33B.1.617.20.000011
ORF1ab/nsp15A1-B233E233GgAagGa33P.10.000047
ORF1ab/nsp15A1-B233E233delGAA---33P.1.150.000697
ORF1ab/nsp15A1-B233E233GgAagGa22A0.000774
ORF1ab/nsp15A1-B233E233GgAagGa22AY.1000.000092
ORF1ab/nsp15A1-B233E233KGaaAaa22AY.230.000139
ORF1ab/nsp15A1-B233E233delGAA---22AY.250.000012
ORF1ab/nsp15A1-B233E233GgAagGa22AY.250.000012
ORF1ab/nsp15A1-B233E233KGaaAaa22AY.260.000057
ORF1ab/nsp15A1-B233E233EgaAgaG22AY.340.000194
ORF1ab/nsp15A1-B233E233AgAagCa22AY.440.000012
ORF1ab/nsp15A1-B233E233DgaAgaC22AY.440.000012
ORF1ab/nsp15A1-B233E233GgAagGa22AY.46.40.000329
ORF1ab/nsp15A1-B233E233EgaAgaG22AY.50.000041
ORF1ab/nsp15A1-B233E233GgAagGa22AY.840.000875
ORF1ab/nsp15A1-B233E233GgAagGa22AY.920.000575
ORF1ab/nsp15A1-B233E233KGaaAaa22AY.920.000575
ORF1ab/nsp15A1-B233E233delGAA---22B.10.000018
ORF1ab/nsp15A1-B233E233KGaaAaa22B.10.000018
ORF1ab/nsp15A1-B233E233delGAA---22B.1.10.000036
ORF1ab/nsp15A1-B233E233XGaaTaa22B.1.1.70.000002
ORF1ab/nsp15A1-B233E233KGaaAaa22B.1.1.700.000682
ORF1ab/nsp15A1-B233E233GgAagGa22B.1.1600.000062
ORF1ab/nsp15A1-B233E233delGAA---22B.1.1600.000062
ORF1ab/nsp15A1-B233E233GgAagGa22B.1.1770.000026
ORF1ab/nsp15A1-B233E233delGAA---22B.1.177.440.001038
ORF1ab/nsp15A1-B233E233GgAagGa22B.1.20.000018
ORF1ab/nsp15A1-B233E233GgAagGa22B.1.214.20.001199
ORF1ab/nsp15A1-B233E233delGAA---22B.1.2580.000133
ORF1ab/nsp15A1-B233E233RGAaAGa22B.1.3510.000059
ORF1ab/nsp15A1-B233E233XGAaTGa12B.1.3510.00003
ORF1ab/nsp15A1-B233E233XGaaTaa12B.1.3510.00003
ORF1ab/nsp15A1-B233E233delGAA---22B.1.5170.000854
ORF1ab/nsp15A1-B233E233GgAagGa22B.1.5240.002813
ORF1ab/nsp15A1-B233E233GgAagGa22B.1.5260.000047
ORF1ab/nsp15A1-B233E233KGaaAaa22B.1.5260.000047
ORF1ab/nsp15A1-B233E233XGaaTaa22B.60.00182
ORF1ab/nsp15A1-B233E233KGaaAaa22P.10.000032
ORF1ab/nsp15A1-B233E233GgAagGa22P.20.000373
ORF1ab/nsp15A1-B233E233GgAagGa22Q.80.00033
ORF1ab/nsp15A1-B233E233KGaaAaa11A0.000387
ORF1ab/nsp15A1-B233E233XGaaTaa11A0.000387
ORF1ab/nsp15A1-B233E233XGaaTaa11A.20.000662
ORF1ab/nsp15A1-B233E233delGAA---11A.2.40.003367
ORF1ab/nsp15A1-B233E233AgAagCa11A.2.50.000499
ORF1ab/nsp15A1-B233E233EgaAgaG11A.23.10.000704
ORF1ab/nsp15A1-B233E233IGAAATT11All0
ORF1ab/nsp15A1-B233E233del2GAa--a11All0
ORF1ab/nsp15A1-B233E233GgAagGa11AT.10.005128
ORF1ab/nsp15A1-B233E233KGaaAaa11AY.1000.000046
ORF1ab/nsp15A1-B233E233AgAagCa11AY.1020.000027
ORF1ab/nsp15A1-B233E233EgaAgaG11AY.1030.000006
ORF1ab/nsp15A1-B233E233IGAAATT11AY.1030.000006
ORF1ab/nsp15A1-B233E233VgAagTa11AY.1030.000006
ORF1ab/nsp15A1-B233E233KGaaAaa11AY.1190.000035
ORF1ab/nsp15A1-B233E233KGaaAaa11AY.120.10.000321
ORF1ab/nsp15A1-B233E233RGAaAGa11AY.120.10.000321
ORF1ab/nsp15A1-B233E233GgAagGa11AY.130.000161
ORF1ab/nsp15A1-B233E233KGaaAaa11AY.20.000356
ORF1ab/nsp15A1-B233E233delGAA---11AY.200.000039
ORF1ab/nsp15A1-B233E233EgaAgaG11AY.250.000006
ORF1ab/nsp15A1-B233E233XGaaTaa11AY.250.000006
ORF1ab/nsp15A1-B233E233QGaaCaa11AY.250.000006
ORF1ab/nsp15A1-B233E233EgaAgaG11AY.260.000028
ORF1ab/nsp15A1-B233E233AgAagCa11AY.260.000028
ORF1ab/nsp15A1-B233E233DgaAgaC11AY.3.10.000085
ORF1ab/nsp15A1-B233E233delGAA---11AY.3.10.000085
ORF1ab/nsp15A1-B233E233GgAagGa11AY.3.10.000085
ORF1ab/nsp15A1-B233E233XGaaTaa11AY.330.000067
ORF1ab/nsp15A1-B233E233AgAagCa11AY.340.000097
ORF1ab/nsp15A1-B233E233EgaAgaG11AY.390.000025
ORF1ab/nsp15A1-B233E233QGaaCaa11AY.390.000025
ORF1ab/nsp15A1-B233E233KGaaAaa11AY.390.000025
ORF1ab/nsp15A1-B233E233XGaaTaa11AY.40.000002
ORF1ab/nsp15A1-B233E233QGaaCaa11AY.40.000002
ORF1ab/nsp15A1-B233E233VgAagTa11AY.4.30.000842
ORF1ab/nsp15A1-B233E233GgAagGa11AY.420.00004
ORF1ab/nsp15A1-B233E233XGaaTaa11AY.430.000004
ORF1ab/nsp15A1-B233E233DgaAgaC11AY.430.000004
ORF1ab/nsp15A1-B233E233EgaAgaG11AY.430.000004
ORF1ab/nsp15A1-B233E233XGaaTaa11AY.440.000006
ORF1ab/nsp15A1-B233E233EgaAgaG11AY.440.000006
ORF1ab/nsp15A1-B233E233GgAagGa11AY.450.000122
ORF1ab/nsp15A1-B233E233XGaaTaa11AY.460.000104
ORF1ab/nsp15A1-B233E233AgAagCa11AY.460.000104
ORF1ab/nsp15A1-B233E233EgaAgaG11AY.46.20.000635
ORF1ab/nsp15A1-B233E233KGaaAaa11AY.46.40.000165
ORF1ab/nsp15A1-B233E233KGaaAaa11AY.50.000021
ORF1ab/nsp15A1-B233E233KGaaAaa11AY.5.40.000277
ORF1ab/nsp15A1-B233E233XGaaTaa11AY.520.000814
ORF1ab/nsp15A1-B233E233RGAaAGa11AY.590.00053
ORF1ab/nsp15A1-B233E233KGaaAaa11AY.590.00053
ORF1ab/nsp15A1-B233E233GgAagGa11AY.590.00053
ORF1ab/nsp15A1-B233E233AgAagCa11AY.60.000041
ORF1ab/nsp15A1-B233E233XGaaTaa11AY.690.000187
ORF1ab/nsp15A1-B233E233VgAagTa11AY.750.000056
ORF1ab/nsp15A1-B233E233AgAagCa11AY.750.000056
ORF1ab/nsp15A1-B233E233AgAagCa11AY.75.10.00018
ORF1ab/nsp15A1-B233E233QGaaCaa11AY.840.000437
ORF1ab/nsp15A1-B233E233GgAagGa11AY.90.000068
ORF1ab/nsp15A1-B233E233KGaaAaa11AY.9.10.000084
ORF1ab/nsp15A1-B233E233GgAagGa11AY.99.20.000092
ORF1ab/nsp15A1-B233E233EgaAgaG11B.10.000009
ORF1ab/nsp15A1-B233E233DgaAgaC11B.10.000009
ORF1ab/nsp15A1-B233E233YGaATaT11B.1.10.000018
ORF1ab/nsp15A1-B233E233VgAAgTT11B.1.10.000018
ORF1ab/nsp15A1-B233E233EgaAgaG11B.1.10.000018
ORF1ab/nsp15A1-B233E233VgAagTa11B.1.1.10.000327
ORF1ab/nsp15A1-B233E233GgAagGa11B.1.1.1390.022727
ORF1ab/nsp15A1-B233E233GgAagGa11B.1.1.2220.000204
ORF1ab/nsp15A1-B233E233GgAagGa11B.1.1.280.000311
ORF1ab/nsp15A1-B233E233GgAagGa11B.1.1.3060.000438
ORF1ab/nsp15A1-B233E233GgAagGa11B.1.1.3480.000796
ORF1ab/nsp15A1-B233E233EgaAgaG11B.1.1.4480.002033
ORF1ab/nsp15A1-B233E233QGaaCaa11B.1.1.70.000001
ORF1ab/nsp15A1-B233E233DgaAgaT11B.1.1.70.000001
ORF1ab/nsp15A1-B233E233delGAA---11B.1.1.700.000341
ORF1ab/nsp15A1-B233E233delGAA---11B.1.1770.000013
ORF1ab/nsp15A1-B233E233XGaaTaa11B.1.1770.000013
ORF1ab/nsp15A1-B233E233EgaAgaG11B.1.1770.000013
ORF1ab/nsp15A1-B233E233VgAagTa11B.1.1770.000013
ORF1ab/nsp15A1-B233E233GgAagGa11B.1.177.620.001192
ORF1ab/nsp15A1-B233E233delGAA---11B.1.177.680.015152
ORF1ab/nsp15A1-B233E233delGAA---11B.1.177.810.000189
ORF1ab/nsp15A1-B233E233VgAagTa11B.1.177.870.000728
ORF1ab/nsp15A1-B233E233QGaaCaa11B.1.20.000009
ORF1ab/nsp15A1-B233E233RGAaAGa11B.1.20.000009
ORF1ab/nsp15A1-B233E233GgAagGa11B.1.2400.000216
ORF1ab/nsp15A1-B233E233GgAagGa11B.1.2410.000812
ORF1ab/nsp15A1-B233E233GgAagGa11B.1.2580.000067
ORF1ab/nsp15A1-B233E233GgAagGa11B.1.3440.008197
ORF1ab/nsp15A1-B233E233DgaAgaC11B.1.3510.00003
ORF1ab/nsp15A1-B233E233KGaaAaa11B.1.3510.00003
ORF1ab/nsp15A1-B233E233EgaAgaG11B.1.351.20.000303
ORF1ab/nsp15A1-B233E233AgAagCa11B.1.351.50.0006
ORF1ab/nsp15A1-B233E233delGAA---11B.1.3560.001727
ORF1ab/nsp15A1-B233E233YGaATaT11B.1.36.10.00114
ORF1ab/nsp15A1-B233E233delGAA---11B.1.3750.00082
ORF1ab/nsp15A1-B233E233VgAagTa11B.1.3950.007042
ORF1ab/nsp15A1-B233E233DgaAgaT11B.1.3990.001934
ORF1ab/nsp15A1-B233E233XGaaTaa11B.1.4160.001269
ORF1ab/nsp15A1-B233E233delGAA---11B.1.416.10.001563
ORF1ab/nsp15A1-B233E233KGaaAaa11B.1.4270.00005
ORF1ab/nsp15A1-B233E233DgaAgaT11B.1.4270.00005
ORF1ab/nsp15A1-B233E233QGaaCaa11B.1.4290.000024
ORF1ab/nsp15A1-B233E233KGaaAaa11B.1.4290.000024
ORF1ab/nsp15A1-B233E233DgaAgaT11B.1.4290.000024
ORF1ab/nsp15A1-B233E233VgAagTa11B.1.4290.000024
ORF1ab/nsp15A1-B233E233delGAA---11B.1.438.10.000107
ORF1ab/nsp15A1-B233E233VgAagTa11B.1.438.10.000107
ORF1ab/nsp15A1-B233E233XGaaTaa11B.1.4460.02
ORF1ab/nsp15A1-B233E233KGaaAaa11B.1.4680.005714
ORF1ab/nsp15A1-B233E233GgAagGa11B.1.4850.014925
ORF1ab/nsp15A1-B233E233YGaATaT11B.1.4970.000315
ORF1ab/nsp15A1-B233E233DgaAgaC11B.1.4970.000315
ORF1ab/nsp15A1-B233E233KGaaAaa11B.1.4970.000315
ORF1ab/nsp15A1-B233E233del2GAa--a11B.1.5250.000113
ORF1ab/nsp15A1-B233E233delGAA---11B.1.5640.000426
ORF1ab/nsp15A1-B233E233delGAA---11B.1.5960.000087
ORF1ab/nsp15A1-B233E233XGaaTaa11B.1.5960.000087
ORF1ab/nsp15A1-B233E233KGaaAaa11B.1.5960.000087
ORF1ab/nsp15A1-B233E233GgAagGa11B.1.617.10.000129
ORF1ab/nsp15A1-B233E233KGaaAaa11B.1.6190.000871
ORF1ab/nsp15A1-B233E233delGAA---11B.1.6200.000946
ORF1ab/nsp15A1-B233E233KGaaAaa11B.1.6210.000089
ORF1ab/nsp15A1-B233E233delGAA---11B.1.621.10.000506
ORF1ab/nsp15A1-B233E233XGaaTaa11B.1.6230.000536
ORF1ab/nsp15A1-B233E233GgAagGa11B.1.6280.000352
ORF1ab/nsp15A1-B233E233KGaaAaa11B.1.80.001972
ORF1ab/nsp15A1-B233E233VgAagTa11C.370.000116
ORF1ab/nsp15A1-B233E233EgaAgaG11C.370.000116
ORF1ab/nsp15A1-B233E233GgAagGa11D.20.000075
ORF1ab/nsp15A1-B233E233delGAA---11D.20.000075
ORF1ab/nsp15A1-B233E233XGaaTaa11D.20.000075
ORF1ab/nsp15A1-B233E233EgaAgaG11P.10.000016
ORF1ab/nsp15A1-B233E233KGaaAaa11P.1.10.10.00813
ORF1ab/nsp15A1-B233E233KGaaAaa11P.1.120.000484
ORF1ab/nsp15A1-B233E233QGaaCaa11Q.30.000145