CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 231 | A231V | A6683V | nonsyn | gCc | gTc | 1994 | 1994 | 1 | 20311-20313 |
ORF1ab/nsp15A1-B | 231 | A231A | A6683A | syn | gcC | gcT | 776 | 557 | 0.717784 | 20311-20313 |
ORF1ab/nsp15A1-B | 231 | A231A | A6683A | syn | gcC | gcA | 776 | 212 | 0.273196 | 20311-20313 |
ORF1ab/nsp15A1-B | 231 | A231A | A6683A | syn | gcC | gcG | 776 | 7 | 0.00902062 | 20311-20313 |
ORF1ab/nsp15A1-B | 231 | A231del | A6683del | del | GCC | --- | 69 | 69 | 1 | 20311-20313 |
ORF1ab/nsp15A1-B | 231 | A231S | A6683S | nonsyn | Gcc | Tcc | 29 | 27 | 0.931035 | 20311-20313 |
ORF1ab/nsp15A1-B | 231 | A231S | A6683S | nonsyn | GCc | AGc | 29 | 2 | 0.0689655 | 20311-20313 |
ORF1ab/nsp15A1-B | 231 | A231P | A6683P | nonsyn | Gcc | Ccc | 23 | 23 | 1 | 20311-20313 |
ORF1ab/nsp15A1-B | 231 | A231T | A6683T | nonsyn | Gcc | Acc | 12 | 12 | 1 | 20311-20313 |
ORF1ab/nsp15A1-B | 231 | A231D | A6683D | nonsyn | gCc | gAc | 5 | 5 | 1 | 20311-20313 |
ORF1ab/nsp15A1-B | 231 | A231E | A6683E | nonsyn | gCC | gAA | 4 | 4 | 1 | 20311-20313 |
ORF1ab/nsp15A1-B | 231 | A231del1 | A6683del1 | del | gCc | g-c | 2 | 1 | 0.5 | 20311-20313 |
ORF1ab/nsp15A1-B | 231 | A231del1 | A6683del1 | del | gCC | g-T | 2 | 1 | 0.5 | 20311-20313 |
ORF1ab/nsp15A1-B | 231 | A231H | A6683H | nonsyn | GCC | CAT | 1 | 1 | 1 | 20311-20313 |
ORF1ab/nsp15A1-B | 231 | A231G | A6683G | nonsyn | gCc | gGc | 1 | 1 | 1 | 20311-20313 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1994 | 1994 | All | 0.000381 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1671 | 1671 | B.1.1.63 | 0.644676 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 557 | 776 | All | 0.000107 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 212 | 776 | All | 0.000041 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcG | 7 | 776 | All | 0.000001 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 103 | 115 | B.1.617.2 | 0.000388 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 11 | 115 | B.1.617.2 | 0.000041 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcG | 1 | 115 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 100 | 101 | AY.103 | 0.000621 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 1 | 101 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 96 | 96 | B.1.177 | 0.001264 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 81 | 81 | AY.4 | 0.000126 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 79 | 79 | AY.26 | 0.002237 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 69 | 69 | All | 0.000013 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 62 | 69 | B.1.1.7 | 0.000056 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 7 | 69 | B.1.1.7 | 0.000006 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 32 | 33 | AY.44 | 0.000195 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 1 | 33 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 31 | 32 | AY.102 | 0.000822 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 1 | 32 | AY.102 | 0.000027 |
ORF1ab/nsp15A1-B | 231 | A231S | Gcc | Tcc | 27 | 29 | All | 0.000005 |
ORF1ab/nsp15A1-B | 231 | A231S | GCc | AGc | 2 | 29 | All | 0 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 21 | 29 | AY.4 | 0.000033 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcG | 4 | 29 | AY.4 | 0.000006 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 4 | 29 | AY.4 | 0.000006 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 27 | 28 | AY.25 | 0.000162 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 1 | 28 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 24 | 27 | B.1.1 | 0.000435 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 3 | 27 | B.1.1 | 0.000054 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 26 | 26 | B.1.1.189 | 0.039334 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 22 | 24 | AY.120 | 0.000818 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 2 | 24 | AY.120 | 0.000074 |
ORF1ab/nsp15A1-B | 231 | A231P | Gcc | Ccc | 23 | 23 | All | 0.000004 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 18 | 18 | B.1.1 | 0.000327 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 9 | 18 | B.1.2 | 0.000079 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 9 | 18 | B.1.2 | 0.000079 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 17 | 17 | B.1 | 0.000156 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 16 | 16 | AY.25 | 0.000096 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 8 | 16 | B.1 | 0.000073 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 7 | 16 | B.1 | 0.000064 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcG | 1 | 16 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 14 | 15 | AY.47 | 0.000435 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 15 | AY.47 | 0.000031 |
ORF1ab/nsp15A1-B | 231 | A231T | Gcc | Acc | 12 | 12 | All | 0.000002 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 11 | 12 | AY.100 | 0.000506 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 12 | AY.100 | 0.000046 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 11 | 11 | AY.7.2 | 0.006152 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 11 | 11 | AY.98.1 | 0.000533 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 9 | 10 | AY.53 | 0.002588 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 1 | 10 | AY.53 | 0.000288 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 8 | 10 | AY.98.1 | 0.000387 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 2 | 10 | AY.98.1 | 0.000097 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 10 | 10 | B.1.429 | 0.000235 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 7 | 9 | AY.43 | 0.000031 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 2 | 9 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 8 | 9 | AY.68 | 0.00219 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 1 | 9 | AY.68 | 0.000274 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 9 | 9 | B | 0.00115 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp15A1-B | 231 | A231S | Gcc | Tcc | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 6 | 6 | AY.6 | 0.000247 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 6 | 6 | B.1.466.2 | 0.002347 |
ORF1ab/nsp15A1-B | 231 | A231D | gCc | gAc | 5 | 5 | All | 0.000001 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 5 | 5 | AY.59 | 0.002648 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp15A1-B | 231 | A231E | gCC | gAA | 4 | 4 | All | 0.000001 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 4 | 4 | B.1.177.81 | 0.000757 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 4 | 4 | P.1.10 | 0.001078 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp15A1-B | 231 | A231S | Gcc | Tcc | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 3 | 3 | B.1.1.56 | 0.053571 |
ORF1ab/nsp15A1-B | 231 | A231P | Gcc | Ccc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp15A1-B | 231 | A231S | Gcc | Tcc | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp15A1-B | 231 | A231S | GCc | AGc | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp15A1-B | 231 | A231del1 | gCC | g-T | 1 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 231 | A231del1 | gCc | g-c | 1 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 1 | 2 | AY.118 | 0.000063 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 2 | AY.118 | 0.000063 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp15A1-B | 231 | A231S | Gcc | Tcc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 1 | 2 | AY.42 | 0.00004 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 2 | AY.42 | 0.00004 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 2 | 2 | AY.80 | 0.002257 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 1 | 2 | AY.98 | 0.000079 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 2 | AY.98 | 0.000079 |
ORF1ab/nsp15A1-B | 231 | A231P | Gcc | Ccc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 231 | A231T | Gcc | Acc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 2 | 2 | B.1.1.192 | 0.004619 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 1 | 2 | B.1.1.306 | 0.000438 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 2 | B.1.1.306 | 0.000438 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp15A1-B | 231 | A231P | Gcc | Ccc | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp15A1-B | 231 | A231S | Gcc | Tcc | 2 | 2 | B.1.218 | 0.010309 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 1 | 2 | B.1.243 | 0.00007 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 2 | B.1.243 | 0.00007 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp15A1-B | 231 | A231P | Gcc | Ccc | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp15A1-B | 231 | A231S | Gcc | Tcc | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 231 | A231S | GCc | AGc | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 231 | A231E | gCC | gAA | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp15A1-B | 231 | A231P | Gcc | Ccc | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 1 | 2 | B.1.609 | 0.000479 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 2 | B.1.609 | 0.000479 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 2 | 2 | B.1.8 | 0.003945 |
ORF1ab/nsp15A1-B | 231 | A231P | Gcc | Ccc | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp15A1-B | 231 | A231H | GCC | CAT | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 231 | A231G | gCc | gGc | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 231 | A231S | Gcc | Tcc | 1 | 1 | AM.4 | 0.003571 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp15A1-B | 231 | A231T | Gcc | Acc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp15A1-B | 231 | A231T | Gcc | Acc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 231 | A231S | Gcc | Tcc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp15A1-B | 231 | A231S | Gcc | Tcc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp15A1-B | 231 | A231T | Gcc | Acc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp15A1-B | 231 | A231P | Gcc | Ccc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp15A1-B | 231 | A231P | Gcc | Ccc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 231 | A231D | gCc | gAc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 231 | A231P | Gcc | Ccc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp15A1-B | 231 | A231P | Gcc | Ccc | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp15A1-B | 231 | A231T | Gcc | Acc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp15A1-B | 231 | A231P | Gcc | Ccc | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp15A1-B | 231 | A231P | Gcc | Ccc | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp15A1-B | 231 | A231S | Gcc | Tcc | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp15A1-B | 231 | A231E | gCC | gAA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 231 | A231S | Gcc | Tcc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 231 | A231E | gCC | gAA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 231 | A231P | Gcc | Ccc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 231 | A231D | gCc | gAc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 231 | A231H | GCC | CAT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | B.1.1.26 | 0.005236 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp15A1-B | 231 | A231S | Gcc | Tcc | 1 | 1 | B.1.1.418 | 0.022727 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp15A1-B | 231 | A231del1 | gCc | g-c | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 231 | A231T | Gcc | Acc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 231 | A231S | Gcc | Tcc | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp15A1-B | 231 | A231T | Gcc | Acc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 231 | A231P | Gcc | Ccc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 231 | A231del1 | gCC | g-T | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 231 | A231D | gCc | gAc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp15A1-B | 231 | A231S | Gcc | Tcc | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp15A1-B | 231 | A231P | Gcc | Ccc | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp15A1-B | 231 | A231P | Gcc | Ccc | 1 | 1 | B.1.289 | 0.00266 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 231 | A231G | gCc | gGc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | B.1.362.2 | 0.004717 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcG | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp15A1-B | 231 | A231D | gCc | gAc | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | B.1.555 | 0.022222 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcA | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | B.1.571 | 0.009709 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 231 | A231S | Gcc | Tcc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 231 | A231T | Gcc | Acc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp15A1-B | 231 | A231T | Gcc | Acc | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp15A1-B | 231 | A231D | gCc | gAc | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp15A1-B | 231 | A231P | Gcc | Ccc | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp15A1-B | 231 | A231T | Gcc | Acc | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp15A1-B | 231 | A231V | gCc | gTc | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp15A1-B | 231 | A231del | GCC | --- | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp15A1-B | 231 | A231T | Gcc | Acc | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp15A1-B | 231 | A231A | gcC | gcT | 1 | 1 | Q.7 | 0.001111 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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