CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 231

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B231A231VA6683VnonsyngCcgTc19941994120311-20313
ORF1ab/nsp15A1-B231A231AA6683AsyngcCgcT7765570.71778420311-20313
ORF1ab/nsp15A1-B231A231AA6683AsyngcCgcA7762120.27319620311-20313
ORF1ab/nsp15A1-B231A231AA6683AsyngcCgcG77670.0090206220311-20313
ORF1ab/nsp15A1-B231A231delA6683deldelGCC---6969120311-20313
ORF1ab/nsp15A1-B231A231SA6683SnonsynGccTcc29270.93103520311-20313
ORF1ab/nsp15A1-B231A231SA6683SnonsynGCcAGc2920.068965520311-20313
ORF1ab/nsp15A1-B231A231PA6683PnonsynGccCcc2323120311-20313
ORF1ab/nsp15A1-B231A231TA6683TnonsynGccAcc1212120311-20313
ORF1ab/nsp15A1-B231A231DA6683DnonsyngCcgAc55120311-20313
ORF1ab/nsp15A1-B231A231EA6683EnonsyngCCgAA44120311-20313
ORF1ab/nsp15A1-B231A231del1A6683del1delgCcg-c210.520311-20313
ORF1ab/nsp15A1-B231A231del1A6683del1delgCCg-T210.520311-20313
ORF1ab/nsp15A1-B231A231HA6683HnonsynGCCCAT11120311-20313
ORF1ab/nsp15A1-B231A231GA6683GnonsyngCcgGc11120311-20313

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B231A231VgCcgTc19941994All0.000381
ORF1ab/nsp15A1-B231A231VgCcgTc16711671B.1.1.630.644676
ORF1ab/nsp15A1-B231A231AgcCgcT557776All0.000107
ORF1ab/nsp15A1-B231A231AgcCgcA212776All0.000041
ORF1ab/nsp15A1-B231A231AgcCgcG7776All0.000001
ORF1ab/nsp15A1-B231A231AgcCgcT103115B.1.617.20.000388
ORF1ab/nsp15A1-B231A231AgcCgcA11115B.1.617.20.000041
ORF1ab/nsp15A1-B231A231AgcCgcG1115B.1.617.20.000004
ORF1ab/nsp15A1-B231A231AgcCgcT100101AY.1030.000621
ORF1ab/nsp15A1-B231A231AgcCgcA1101AY.1030.000006
ORF1ab/nsp15A1-B231A231VgCcgTc9696B.1.1770.001264
ORF1ab/nsp15A1-B231A231VgCcgTc8181AY.40.000126
ORF1ab/nsp15A1-B231A231AgcCgcA7979AY.260.002237
ORF1ab/nsp15A1-B231A231delGCC---6969All0.000013
ORF1ab/nsp15A1-B231A231AgcCgcT6269B.1.1.70.000056
ORF1ab/nsp15A1-B231A231AgcCgcA769B.1.1.70.000006
ORF1ab/nsp15A1-B231A231AgcCgcT3233AY.440.000195
ORF1ab/nsp15A1-B231A231AgcCgcA133AY.440.000006
ORF1ab/nsp15A1-B231A231AgcCgcT3132AY.1020.000822
ORF1ab/nsp15A1-B231A231AgcCgcA132AY.1020.000027
ORF1ab/nsp15A1-B231A231SGccTcc2729All0.000005
ORF1ab/nsp15A1-B231A231SGCcAGc229All0
ORF1ab/nsp15A1-B231A231AgcCgcT2129AY.40.000033
ORF1ab/nsp15A1-B231A231AgcCgcG429AY.40.000006
ORF1ab/nsp15A1-B231A231AgcCgcA429AY.40.000006
ORF1ab/nsp15A1-B231A231AgcCgcT2728AY.250.000162
ORF1ab/nsp15A1-B231A231AgcCgcA128AY.250.000006
ORF1ab/nsp15A1-B231A231AgcCgcT2427B.1.10.000435
ORF1ab/nsp15A1-B231A231AgcCgcA327B.1.10.000054
ORF1ab/nsp15A1-B231A231AgcCgcT2626B.1.1.1890.039334
ORF1ab/nsp15A1-B231A231AgcCgcA2224AY.1200.000818
ORF1ab/nsp15A1-B231A231AgcCgcT224AY.1200.000074
ORF1ab/nsp15A1-B231A231PGccCcc2323All0.000004
ORF1ab/nsp15A1-B231A231VgCcgTc1818B.1.10.000327
ORF1ab/nsp15A1-B231A231AgcCgcT918B.1.20.000079
ORF1ab/nsp15A1-B231A231AgcCgcA918B.1.20.000079
ORF1ab/nsp15A1-B231A231VgCcgTc1717B.10.000156
ORF1ab/nsp15A1-B231A231VgCcgTc1616AY.250.000096
ORF1ab/nsp15A1-B231A231AgcCgcT816B.10.000073
ORF1ab/nsp15A1-B231A231AgcCgcA716B.10.000064
ORF1ab/nsp15A1-B231A231AgcCgcG116B.10.000009
ORF1ab/nsp15A1-B231A231AgcCgcA1415AY.470.000435
ORF1ab/nsp15A1-B231A231AgcCgcT115AY.470.000031
ORF1ab/nsp15A1-B231A231TGccAcc1212All0.000002
ORF1ab/nsp15A1-B231A231AgcCgcA1112AY.1000.000506
ORF1ab/nsp15A1-B231A231AgcCgcT112AY.1000.000046
ORF1ab/nsp15A1-B231A231VgCcgTc1111AY.7.20.006152
ORF1ab/nsp15A1-B231A231VgCcgTc1111AY.98.10.000533
ORF1ab/nsp15A1-B231A231VgCcgTc1111B.1.617.20.000041
ORF1ab/nsp15A1-B231A231AgcCgcT910AY.530.002588
ORF1ab/nsp15A1-B231A231AgcCgcA110AY.530.000288
ORF1ab/nsp15A1-B231A231AgcCgcA810AY.98.10.000387
ORF1ab/nsp15A1-B231A231AgcCgcT210AY.98.10.000097
ORF1ab/nsp15A1-B231A231AgcCgcT1010B.1.4290.000235
ORF1ab/nsp15A1-B231A231AgcCgcT79AY.430.000031
ORF1ab/nsp15A1-B231A231AgcCgcA29AY.430.000009
ORF1ab/nsp15A1-B231A231AgcCgcT89AY.680.00219
ORF1ab/nsp15A1-B231A231AgcCgcA19AY.680.000274
ORF1ab/nsp15A1-B231A231VgCcgTc99B0.00115
ORF1ab/nsp15A1-B231A231delGCC---99B.1.1.70.000008
ORF1ab/nsp15A1-B231A231SGccTcc88B.10.000073
ORF1ab/nsp15A1-B231A231VgCcgTc88B.1.20.00007
ORF1ab/nsp15A1-B231A231AgcCgcA66AY.60.000247
ORF1ab/nsp15A1-B231A231AgcCgcT66B.1.466.20.002347
ORF1ab/nsp15A1-B231A231DgCcgAc55All0.000001
ORF1ab/nsp15A1-B231A231AgcCgcT55AY.30.00005
ORF1ab/nsp15A1-B231A231delGCC---55AY.590.002648
ORF1ab/nsp15A1-B231A231delGCC---55B.1.20.000044
ORF1ab/nsp15A1-B231A231delGCC---55B.1.5250.000566
ORF1ab/nsp15A1-B231A231delGCC---440.222222
ORF1ab/nsp15A1-B231A231EgCCgAA44All0.000001
ORF1ab/nsp15A1-B231A231delGCC---44AY.430.000018
ORF1ab/nsp15A1-B231A231AgcCgcT44B.1.177.810.000757
ORF1ab/nsp15A1-B231A231AgcCgcA44P.1.100.001078
ORF1ab/nsp15A1-B231A231VgCcgTc33AY.30.00003
ORF1ab/nsp15A1-B231A231AgcCgcT33AY.350.000699
ORF1ab/nsp15A1-B231A231SGccTcc33AY.98.10.000145
ORF1ab/nsp15A1-B231A231AgcCgcT33B.1.1.2220.000612
ORF1ab/nsp15A1-B231A231VgCcgTc33B.1.1.560.053571
ORF1ab/nsp15A1-B231A231PGccCcc33B.1.1.70.000003
ORF1ab/nsp15A1-B231A231SGccTcc23B.1.1.70.000002
ORF1ab/nsp15A1-B231A231SGCcAGc13B.1.1.70.000001
ORF1ab/nsp15A1-B231A231delGCC---33B.1.617.20.000011
ORF1ab/nsp15A1-B231A231AgcCgcT33P.10.000047
ORF1ab/nsp15A1-B231A231delGCC---33P.1.150.000697
ORF1ab/nsp15A1-B231A231del1gCCg-T12All0
ORF1ab/nsp15A1-B231A231del1gCcg-c12All0
ORF1ab/nsp15A1-B231A231AgcCgcA12AY.1180.000063
ORF1ab/nsp15A1-B231A231AgcCgcT12AY.1180.000063
ORF1ab/nsp15A1-B231A231delGCC---22AY.250.000012
ORF1ab/nsp15A1-B231A231VgCcgTc22AY.3.10.000171
ORF1ab/nsp15A1-B231A231SGccTcc22AY.40.000003
ORF1ab/nsp15A1-B231A231AgcCgcA12AY.420.00004
ORF1ab/nsp15A1-B231A231AgcCgcT12AY.420.00004
ORF1ab/nsp15A1-B231A231VgCcgTc22AY.430.000009
ORF1ab/nsp15A1-B231A231VgCcgTc22AY.800.002257
ORF1ab/nsp15A1-B231A231AgcCgcA22AY.850.000854
ORF1ab/nsp15A1-B231A231AgcCgcA12AY.980.000079
ORF1ab/nsp15A1-B231A231AgcCgcT12AY.980.000079
ORF1ab/nsp15A1-B231A231PGccCcc22B.10.000018
ORF1ab/nsp15A1-B231A231delGCC---22B.10.000018
ORF1ab/nsp15A1-B231A231TGccAcc22B.10.000018
ORF1ab/nsp15A1-B231A231delGCC---22B.1.10.000036
ORF1ab/nsp15A1-B231A231VgCcgTc22B.1.1.1920.004619
ORF1ab/nsp15A1-B231A231AgcCgcT22B.1.1.2160.001781
ORF1ab/nsp15A1-B231A231AgcCgcA12B.1.1.3060.000438
ORF1ab/nsp15A1-B231A231AgcCgcT12B.1.1.3060.000438
ORF1ab/nsp15A1-B231A231AgcCgcA22B.1.1.3160.00185
ORF1ab/nsp15A1-B231A231VgCcgTc22B.1.1.5190.000079
ORF1ab/nsp15A1-B231A231VgCcgTc22B.1.1.70.000002
ORF1ab/nsp15A1-B231A231delGCC---22B.1.1600.000062
ORF1ab/nsp15A1-B231A231PGccCcc22B.1.1600.000062
ORF1ab/nsp15A1-B231A231AgcCgcT22B.1.1770.000026
ORF1ab/nsp15A1-B231A231delGCC---22B.1.177.440.001038
ORF1ab/nsp15A1-B231A231SGccTcc22B.1.2180.010309
ORF1ab/nsp15A1-B231A231AgcCgcA12B.1.2430.00007
ORF1ab/nsp15A1-B231A231AgcCgcT12B.1.2430.00007
ORF1ab/nsp15A1-B231A231delGCC---22B.1.2580.000133
ORF1ab/nsp15A1-B231A231PGccCcc22B.1.3510.000059
ORF1ab/nsp15A1-B231A231SGccTcc12B.1.3510.00003
ORF1ab/nsp15A1-B231A231SGCcAGc12B.1.3510.00003
ORF1ab/nsp15A1-B231A231EgCCgAA22B.1.36.10.002281
ORF1ab/nsp15A1-B231A231PGccCcc22B.1.4290.000047
ORF1ab/nsp15A1-B231A231delGCC---22B.1.5170.000854
ORF1ab/nsp15A1-B231A231AgcCgcA12B.1.6090.000479
ORF1ab/nsp15A1-B231A231AgcCgcT12B.1.6090.000479
ORF1ab/nsp15A1-B231A231VgCcgTc22B.1.617.10.000258
ORF1ab/nsp15A1-B231A231AgcCgcT22B.1.617.10.000258
ORF1ab/nsp15A1-B231A231AgcCgcT22B.1.6210.000177
ORF1ab/nsp15A1-B231A231AgcCgcA22B.1.80.003945
ORF1ab/nsp15A1-B231A231PGccCcc11A.20.000662
ORF1ab/nsp15A1-B231A231delGCC---11A.2.40.003367
ORF1ab/nsp15A1-B231A231HGCCCAT11All0
ORF1ab/nsp15A1-B231A231GgCcgGc11All0
ORF1ab/nsp15A1-B231A231SGccTcc11AM.40.003571
ORF1ab/nsp15A1-B231A231AgcCgcT11AY.1010.00049
ORF1ab/nsp15A1-B231A231TGccAcc11AY.1020.000027
ORF1ab/nsp15A1-B231A231TGccAcc11AY.1030.000006
ORF1ab/nsp15A1-B231A231SGccTcc11AY.1030.000006
ORF1ab/nsp15A1-B231A231AgcCgcT11AY.1080.001103
ORF1ab/nsp15A1-B231A231VgCcgTc11AY.1080.001103
ORF1ab/nsp15A1-B231A231AgcCgcT11AY.1100.000113
ORF1ab/nsp15A1-B231A231AgcCgcT11AY.1190.000035
ORF1ab/nsp15A1-B231A231SGccTcc11AY.1200.000037
ORF1ab/nsp15A1-B231A231AgcCgcT11AY.130.000161
ORF1ab/nsp15A1-B231A231AgcCgcT11AY.160.00038
ORF1ab/nsp15A1-B231A231delGCC---11AY.200.000039
ORF1ab/nsp15A1-B231A231AgcCgcT11AY.200.000039
ORF1ab/nsp15A1-B231A231TGccAcc11AY.200.000039
ORF1ab/nsp15A1-B231A231AgcCgcT11AY.230.00007
ORF1ab/nsp15A1-B231A231AgcCgcA11AY.23.10.000417
ORF1ab/nsp15A1-B231A231delGCC---11AY.3.10.000085
ORF1ab/nsp15A1-B231A231AgcCgcT11AY.34.10.00051
ORF1ab/nsp15A1-B231A231AgcCgcA11AY.380.000499
ORF1ab/nsp15A1-B231A231AgcCgcT11AY.390.000025
ORF1ab/nsp15A1-B231A231VgCcgTc11AY.390.000025
ORF1ab/nsp15A1-B231A231PGccCcc11AY.40.000002
ORF1ab/nsp15A1-B231A231AgcCgcT11AY.4.20.000022
ORF1ab/nsp15A1-B231A231PGccCcc11AY.430.000004
ORF1ab/nsp15A1-B231A231DgCcgAc11AY.430.000004
ORF1ab/nsp15A1-B231A231VgCcgTc11AY.440.000006
ORF1ab/nsp15A1-B231A231PGccCcc11AY.440.000006
ORF1ab/nsp15A1-B231A231AgcCgcT11AY.460.000104
ORF1ab/nsp15A1-B231A231VgCcgTc11AY.46.10.001027
ORF1ab/nsp15A1-B231A231PGccCcc11AY.46.20.000635
ORF1ab/nsp15A1-B231A231AgcCgcT11AY.50.000021
ORF1ab/nsp15A1-B231A231TGccAcc11AY.50.000021
ORF1ab/nsp15A1-B231A231PGccCcc11AY.540.000095
ORF1ab/nsp15A1-B231A231PGccCcc11AY.610.000105
ORF1ab/nsp15A1-B231A231VgCcgTc11AY.610.000105
ORF1ab/nsp15A1-B231A231AgcCgcT11AY.670.000464
ORF1ab/nsp15A1-B231A231AgcCgcT11AY.7.10.000113
ORF1ab/nsp15A1-B231A231AgcCgcT11AY.710.000475
ORF1ab/nsp15A1-B231A231AgcCgcT11AY.75.10.00018
ORF1ab/nsp15A1-B231A231VgCcgTc11AY.860.00083
ORF1ab/nsp15A1-B231A231SGccTcc11AY.960.002075
ORF1ab/nsp15A1-B231A231AgcCgcT11AY.99.20.000092
ORF1ab/nsp15A1-B231A231EgCCgAA11B.10.000009
ORF1ab/nsp15A1-B231A231SGccTcc11B.1.10.000018
ORF1ab/nsp15A1-B231A231EgCCgAA11B.1.10.000018
ORF1ab/nsp15A1-B231A231PGccCcc11B.1.10.000018
ORF1ab/nsp15A1-B231A231DgCcgAc11B.1.10.000018
ORF1ab/nsp15A1-B231A231HGCCCAT11B.1.10.000018
ORF1ab/nsp15A1-B231A231AgcCgcT11B.1.1.10.000327
ORF1ab/nsp15A1-B231A231VgCcgTc11B.1.1.10.000327
ORF1ab/nsp15A1-B231A231VgCcgTc11B.1.1.1010.01
ORF1ab/nsp15A1-B231A231VgCcgTc11B.1.1.1740.003378
ORF1ab/nsp15A1-B231A231AgcCgcA11B.1.1.250.000569
ORF1ab/nsp15A1-B231A231AgcCgcT11B.1.1.260.005236
ORF1ab/nsp15A1-B231A231VgCcgTc11B.1.1.2630.001558
ORF1ab/nsp15A1-B231A231VgCcgTc11B.1.1.3090.005848
ORF1ab/nsp15A1-B231A231VgCcgTc11B.1.1.3980.003226
ORF1ab/nsp15A1-B231A231VgCcgTc11B.1.1.4160.000905
ORF1ab/nsp15A1-B231A231SGccTcc11B.1.1.4180.022727
ORF1ab/nsp15A1-B231A231AgcCgcA11B.1.1.4870.005587
ORF1ab/nsp15A1-B231A231del1gCcg-c11B.1.1.70.000001
ORF1ab/nsp15A1-B231A231TGccAcc11B.1.1.70.000001
ORF1ab/nsp15A1-B231A231delGCC---11B.1.1.700.000341
ORF1ab/nsp15A1-B231A231SGccTcc11B.1.160.320.004292
ORF1ab/nsp15A1-B231A231delGCC---11B.1.1770.000013
ORF1ab/nsp15A1-B231A231AgcCgcT11B.1.177.210.000076
ORF1ab/nsp15A1-B231A231VgCcgTc11B.1.177.440.000519
ORF1ab/nsp15A1-B231A231AgcCgcT11B.1.177.560.000668
ORF1ab/nsp15A1-B231A231delGCC---11B.1.177.680.015152
ORF1ab/nsp15A1-B231A231AgcCgcT11B.1.177.730.000566
ORF1ab/nsp15A1-B231A231delGCC---11B.1.177.810.000189
ORF1ab/nsp15A1-B231A231TGccAcc11B.1.20.000009
ORF1ab/nsp15A1-B231A231PGccCcc11B.1.20.000009
ORF1ab/nsp15A1-B231A231del1gCCg-T11B.1.20.000009
ORF1ab/nsp15A1-B231A231DgCcgAc11B.1.20.000009
ORF1ab/nsp15A1-B231A231AgcCgcA11B.1.2210.000071
ORF1ab/nsp15A1-B231A231VgCcgTc11B.1.2210.000071
ORF1ab/nsp15A1-B231A231SGccTcc11B.1.2340.000132
ORF1ab/nsp15A1-B231A231PGccCcc11B.1.2390.001221
ORF1ab/nsp15A1-B231A231VgCcgTc11B.1.2400.000216
ORF1ab/nsp15A1-B231A231VgCcgTc11B.1.2580.000067
ORF1ab/nsp15A1-B231A231PGccCcc11B.1.2890.00266
ORF1ab/nsp15A1-B231A231AgcCgcT11B.1.30.002618
ORF1ab/nsp15A1-B231A231AgcCgcT11B.1.3050.002151
ORF1ab/nsp15A1-B231A231VgCcgTc11B.1.3510.00003
ORF1ab/nsp15A1-B231A231GgCcgGc11B.1.3510.00003
ORF1ab/nsp15A1-B231A231delGCC---11B.1.3560.001727
ORF1ab/nsp15A1-B231A231VgCcgTc11B.1.362.20.004717
ORF1ab/nsp15A1-B231A231AgcCgcG11B.1.3690.000285
ORF1ab/nsp15A1-B231A231VgCcgTc11B.1.3690.000285
ORF1ab/nsp15A1-B231A231delGCC---11B.1.3750.00082
ORF1ab/nsp15A1-B231A231AgcCgcT11B.1.4160.001269
ORF1ab/nsp15A1-B231A231delGCC---11B.1.416.10.001563
ORF1ab/nsp15A1-B231A231AgcCgcT11B.1.4270.00005
ORF1ab/nsp15A1-B231A231delGCC---11B.1.438.10.000107
ORF1ab/nsp15A1-B231A231VgCcgTc11B.1.4590.004082
ORF1ab/nsp15A1-B231A231AgcCgcT11B.1.4620.007246
ORF1ab/nsp15A1-B231A231DgCcgAc11B.1.4970.000315
ORF1ab/nsp15A1-B231A231delGCC---11B.1.4970.000315
ORF1ab/nsp15A1-B231A231VgCcgTc11B.1.4970.000315
ORF1ab/nsp15A1-B231A231AgcCgcT11B.1.5170.000427
ORF1ab/nsp15A1-B231A231AgcCgcT11B.1.5250.000113
ORF1ab/nsp15A1-B231A231AgcCgcA11B.1.5260.000024
ORF1ab/nsp15A1-B231A231VgCcgTc11B.1.5400.009709
ORF1ab/nsp15A1-B231A231VgCcgTc11B.1.5550.022222
ORF1ab/nsp15A1-B231A231AgcCgcA11B.1.5610.000397
ORF1ab/nsp15A1-B231A231delGCC---11B.1.5640.000426
ORF1ab/nsp15A1-B231A231AgcCgcT11B.1.5710.009709
ORF1ab/nsp15A1-B231A231delGCC---11B.1.5960.000087
ORF1ab/nsp15A1-B231A231SGccTcc11B.1.617.20.000004
ORF1ab/nsp15A1-B231A231TGccAcc11B.1.617.20.000004
ORF1ab/nsp15A1-B231A231delGCC---11B.1.6200.000946
ORF1ab/nsp15A1-B231A231TGccAcc11B.1.6210.000089
ORF1ab/nsp15A1-B231A231delGCC---11B.1.621.10.000506
ORF1ab/nsp15A1-B231A231DgCcgAc11B.1.6370.000073
ORF1ab/nsp15A1-B231A231PGccCcc11B.1.780.008547
ORF1ab/nsp15A1-B231A231TGccAcc11B.30.000831
ORF1ab/nsp15A1-B231A231VgCcgTc11C.10.002392
ORF1ab/nsp15A1-B231A231AgcCgcT11C.370.000116
ORF1ab/nsp15A1-B231A231delGCC---11D.20.000075
ORF1ab/nsp15A1-B231A231AgcCgcT11D.20.000075
ORF1ab/nsp15A1-B231A231TGccAcc11P.1.140.000048
ORF1ab/nsp15A1-B231A231AgcCgcT11P.1.20.001156
ORF1ab/nsp15A1-B231A231AgcCgcT11P.1.40.000977
ORF1ab/nsp15A1-B231A231AgcCgcT11Q.70.001111