CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 223

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp15A1-B	223	E223G	E6675G	nonsyn	gAa	gGa	790	789	0.998734	20287-20289
ORF1ab/nsp15A1-B	223	E223G	E6675G	nonsyn	gAA	gGC	790	1	0.00126582	20287-20289
ORF1ab/nsp15A1-B	223	E223A	E6675A	nonsyn	gAa	gCa	477	477	1	20287-20289
ORF1ab/nsp15A1-B	223	E223K	E6675K	nonsyn	Gaa	Aaa	221	221	1	20287-20289
ORF1ab/nsp15A1-B	223	E223E	E6675E	syn	gaA	gaG	166	166	1	20287-20289
ORF1ab/nsp15A1-B	223	E223del	E6675del	del	GAA	---	64	64	1	20287-20289
ORF1ab/nsp15A1-B	223	E223V	E6675V	nonsyn	gAa	gTa	54	54	1	20287-20289
ORF1ab/nsp15A1-B	223	E223D	E6675D	nonsyn	gaA	gaC	32	30	0.9375	20287-20289
ORF1ab/nsp15A1-B	223	E223D	E6675D	nonsyn	gaA	gaT	32	2	0.0625	20287-20289
ORF1ab/nsp15A1-B	223	E223X	E6675X	nonsyn	Gaa	Taa	19	19	1	20287-20289
ORF1ab/nsp15A1-B	223	E223Q	E6675Q	nonsyn	Gaa	Caa	7	7	1	20287-20289
ORF1ab/nsp15A1-B	223	E223N	E6675N	nonsyn	GaA	AaC	1	1	1	20287-20289
ORF1ab/nsp15A1-B	223	E223L	E6675L	nonsyn	GAA	CTC	1	1	1	20287-20289
ORF1ab/nsp15A1-B	223	E223R	E6675R	nonsyn	GAa	AGa	1	1	1	20287-20289
ORF1ab/nsp15A1-B	223	E223T	E6675T	nonsyn	GAa	ACa	1	1	1	20287-20289

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	789	790	All	0.000151
ORF1ab/nsp15A1-B	223	E223G	gAA	gGC	1	790	All	0
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	477	477	All	0.000091
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	291	291	B.1.1.228	0.887195
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	254	254	AY.4	0.000395
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	251	251	AY.34.1	0.127996
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	221	221	All	0.000042
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	166	166	All	0.000032
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	109	109	AY.44	0.000663
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	73	73	B.1.1.15	0.986486
ORF1ab/nsp15A1-B	223	E223del	GAA	---	64	64	All	0.000012
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	62	62	B.1.1.348	0.049363
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	55	55	B.1	0.000504
ORF1ab/nsp15A1-B	223	E223V	gAa	gTa	54	54	All	0.00001
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	46	46	B.1.2	0.000405
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	37	37	B.1.1.7	0.000033
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	35	35	B.1.609	0.016779
ORF1ab/nsp15A1-B	223	E223D	gaA	gaC	30	32	All	0.000006
ORF1ab/nsp15A1-B	223	E223D	gaA	gaT	2	32	All	0
ORF1ab/nsp15A1-B	223	E223V	gAa	gTa	29	29	AY.43	0.000128
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	23	23	B.1.1.7	0.000021
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	21	21	AY.44	0.000128
ORF1ab/nsp15A1-B	223	E223X	Gaa	Taa	19	19	All	0.000004
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	19	19	B.1.617.2	0.000072
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	18	18	B.1.1.7	0.000016
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	18	18	B.1.2	0.000158
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	15	15	AY.4	0.000023
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	13	13	B.1.1.7	0.000012
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	10	10	AY.25	0.00006
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	9	9	AY.43	0.00004
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	9	9	B.1.177	0.000119
ORF1ab/nsp15A1-B	223	E223V	gAa	gTa	9	9	B.1.351	0.000268
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	9	9	B.1.429	0.000212
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	9	9	B.1.617.2	0.000034
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	8	8	AY.43	0.000035
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	8	8	AY.44	0.000049
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	7	8	B.1.2	0.000062
ORF1ab/nsp15A1-B	223	E223G	gAA	gGC	1	8	B.1.2	0.000009
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	8	8	P.1.1	0.002541
ORF1ab/nsp15A1-B	223	E223Q	Gaa	Caa	7	7	All	0.000001
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	7	7	B.1.1	0.000127
ORF1ab/nsp15A1-B	223	E223V	gAa	gTa	7	7	B.1.1.7	0.000006
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	7	7	P.1	0.00011
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	6	6	AY.4.2	0.00013
ORF1ab/nsp15A1-B	223	E223del	GAA	---	6	6	B.1.1.7	0.000005
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	6	6	B.1.177.32	0.008097
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	6	6	B.1.617.2	0.000023
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	6	6	B.1.617.2	0.000023
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	5	5	AY.34	0.000485
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	5	5	AY.4	0.000008
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	5	5	B.1.1.312	0.00956
ORF1ab/nsp15A1-B	223	E223D	gaA	gaC	5	5	B.1.1.7	0.000004
ORF1ab/nsp15A1-B	223	E223del	GAA	---	5	5	B.1.2	0.000044
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	5	5	B.1.595	0.001305
ORF1ab/nsp15A1-B	223	E223del	GAA	---	5	5	B.1.617.2	0.000019
ORF1ab/nsp15A1-B	223	E223del	GAA	---	4	4		0.222222
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	4	4	AY.102	0.000106
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	4	4	AY.103	0.000025
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	4	4	AY.117	0.000338
ORF1ab/nsp15A1-B	223	E223D	gaA	gaC	4	4	AY.29	0.000063
ORF1ab/nsp15A1-B	223	E223del	GAA	---	4	4	AY.59	0.002119
ORF1ab/nsp15A1-B	223	E223X	Gaa	Taa	4	4	B.1	0.000037
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	4	4	B.1.1	0.000073
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	4	4	B.1.177	0.000053
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	4	4	P.2	0.000747
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	3	3	AY.102	0.00008
ORF1ab/nsp15A1-B	223	E223D	gaA	gaC	3	3	AY.103	0.000019
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	3	3	AY.103	0.000019
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	3	3	AY.120	0.000112
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	3	3	AY.3	0.00003
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	3	3	AY.4	0.000005
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	3	3	AY.42	0.000121
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	3	3	AY.43	0.000013
ORF1ab/nsp15A1-B	223	E223del	GAA	---	3	3	AY.43	0.000013
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	3	3	B.1	0.000027
ORF1ab/nsp15A1-B	223	E223X	Gaa	Taa	3	3	B.1.1	0.000054
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	3	3	B.1.1	0.000054
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	3	3	B.1.1	0.000054
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	3	3	B.1.110.3	0.002155
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	3	3	B.1.346	0.003932
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	3	3	B.1.526	0.000071
ORF1ab/nsp15A1-B	223	E223del	GAA	---	3	3	P.1.15	0.000697
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	2	2	AY.101	0.000981
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	2	2	AY.102	0.000053
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	2	2	AY.103	0.000012
ORF1ab/nsp15A1-B	223	E223del	GAA	---	2	2	AY.25	0.000012
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	2	2	AY.25	0.000012
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	2	2	AY.3	0.00002
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	2	2	AY.3	0.00002
ORF1ab/nsp15A1-B	223	E223D	gaA	gaC	2	2	AY.3	0.00002
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	2	2	AY.33	0.000134
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	2	2	AY.36	0.000296
ORF1ab/nsp15A1-B	223	E223del	GAA	---	2	2	AY.4	0.000003
ORF1ab/nsp15A1-B	223	E223D	gaA	gaC	2	2	AY.4	0.000003
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	2	2	AY.44	0.000012
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	2	2	AY.46	0.000208
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	2	2	AY.46.6	0.000144
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	2	2	AY.47	0.000062
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	2	2	AY.47	0.000062
ORF1ab/nsp15A1-B	223	E223V	gAa	gTa	2	2	AY.47	0.000062
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	2	2	AY.54	0.000191
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	2	2	AY.92	0.000575
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	2	2	AY.93	0.000546
ORF1ab/nsp15A1-B	223	E223del	GAA	---	2	2	B.1	0.000018
ORF1ab/nsp15A1-B	223	E223Q	Gaa	Caa	2	2	B.1	0.000018
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	2	2	B.1.1.1	0.000653
ORF1ab/nsp15A1-B	223	E223Q	Gaa	Caa	2	2	B.1.1.7	0.000002
ORF1ab/nsp15A1-B	223	E223del	GAA	---	2	2	B.1.160	0.000062
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	2	2	B.1.177	0.000026
ORF1ab/nsp15A1-B	223	E223del	GAA	---	2	2	B.1.177.44	0.001038
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	2	2	B.1.2	0.000018
ORF1ab/nsp15A1-B	223	E223del	GAA	---	2	2	B.1.258	0.000133
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	2	2	B.1.366	0.009756
ORF1ab/nsp15A1-B	223	E223del	GAA	---	2	2	B.1.517	0.000854
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	2	2	B.1.575	0.000607
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	2	2	B.1.595	0.000522
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	2	2	B.1.596	0.000174
ORF1ab/nsp15A1-B	223	E223D	gaA	gaC	2	2	B.1.617.2	0.000008
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	2	2	B.6	0.00182
ORF1ab/nsp15A1-B	223	E223X	Gaa	Taa	2	2	B.6	0.00182
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	2	2	D.2	0.00015
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	2	2	P.1	0.000032
ORF1ab/nsp15A1-B	223	E223del	GAA	---	2	2	P.1.1	0.000635
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	2	2	P.1.14	0.000096
ORF1ab/nsp15A1-B	223	E223X	Gaa	Taa	1	1	A	0.000387
ORF1ab/nsp15A1-B	223	E223D	gaA	gaC	1	1	A.1	0.000282
ORF1ab/nsp15A1-B	223	E223Q	Gaa	Caa	1	1	A.2.2	0.001689
ORF1ab/nsp15A1-B	223	E223del	GAA	---	1	1	A.2.4	0.003367
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	1	1	A.2.4	0.003367
ORF1ab/nsp15A1-B	223	E223L	GAA	CTC	1	1	All	0
ORF1ab/nsp15A1-B	223	E223N	GaA	AaC	1	1	All	0
ORF1ab/nsp15A1-B	223	E223T	GAa	ACa	1	1	All	0
ORF1ab/nsp15A1-B	223	E223R	GAa	AGa	1	1	All	0
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	1	1	AU.2	0.002421
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	1	1	AY.100	0.000046
ORF1ab/nsp15A1-B	223	E223D	gaA	gaC	1	1	AY.102	0.000027
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	1	1	AY.103	0.000006
ORF1ab/nsp15A1-B	223	E223D	gaA	gaC	1	1	AY.117	0.000085
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	1	1	AY.118	0.000063
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	1	1	AY.119	0.000035
ORF1ab/nsp15A1-B	223	E223V	gAa	gTa	1	1	AY.120	0.000037
ORF1ab/nsp15A1-B	223	E223R	GAa	AGa	1	1	AY.120.1	0.000321
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	1	1	AY.121	0.000135
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	1	1	AY.2	0.000356
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	1	1	AY.20	0.000039
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	1	1	AY.20	0.000039
ORF1ab/nsp15A1-B	223	E223del	GAA	---	1	1	AY.20	0.000039
ORF1ab/nsp15A1-B	223	E223del	GAA	---	1	1	AY.23	0.00007
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	1	1	AY.26	0.000028
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	1	1	AY.29	0.000016
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	1	1	AY.29	0.000016
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	1	1	AY.39	0.000025
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	1	1	AY.39	0.000025
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	1	1	AY.4.2	0.000022
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	1	1	AY.4.2.1	0.000149
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	1	1	AY.42	0.00004
ORF1ab/nsp15A1-B	223	E223X	Gaa	Taa	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	223	E223D	gaA	gaC	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	1	1	AY.46	0.000104
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	1	1	AY.46.6	0.000072
ORF1ab/nsp15A1-B	223	E223D	gaA	gaC	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	223	E223T	GAa	ACa	1	1	AY.5	0.000021
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	1	1	AY.5.3	0.000337
ORF1ab/nsp15A1-B	223	E223X	Gaa	Taa	1	1	AY.52	0.000814
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	1	1	AY.59	0.00053
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	1	1	AY.6	0.000041
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	1	1	AY.73	0.000665
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	1	1	AY.74	0.000116
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	1	1	AY.75	0.000056
ORF1ab/nsp15A1-B	223	E223D	gaA	gaT	1	1	AY.75.1	0.00018
ORF1ab/nsp15A1-B	223	E223del	GAA	---	1	1	AY.85	0.000427
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	1	1	AY.9.1	0.000084
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	1	1	AY.9.2	0.000037
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	1	1	AY.9.2	0.000037
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	1	1	B	0.000128
ORF1ab/nsp15A1-B	223	E223V	gAa	gTa	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	223	E223del	GAA	---	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	223	E223V	gAa	gTa	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	223	E223X	Gaa	Taa	1	1	B.1.1.164	0.005155
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	1	1	B.1.1.253	0.002506
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	1	1	B.1.1.301	0.001179
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	1	1	B.1.1.317	0.000412
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	1	1	B.1.1.317	0.000412
ORF1ab/nsp15A1-B	223	E223X	Gaa	Taa	1	1	B.1.1.39	0.00051
ORF1ab/nsp15A1-B	223	E223D	gaA	gaC	1	1	B.1.1.39	0.00051
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	1	1	B.1.1.39	0.00051
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	1	1	B.1.1.398	0.003226
ORF1ab/nsp15A1-B	223	E223X	Gaa	Taa	1	1	B.1.1.423	0.0625
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	1	1	B.1.1.519	0.00004
ORF1ab/nsp15A1-B	223	E223del	GAA	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	1	1	B.1.118	0.006711
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	1	1	B.1.160.30	0.002976
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	1	1	B.1.177	0.000013
ORF1ab/nsp15A1-B	223	E223del	GAA	---	1	1	B.1.177	0.000013
ORF1ab/nsp15A1-B	223	E223X	Gaa	Taa	1	1	B.1.177	0.000013
ORF1ab/nsp15A1-B	223	E223del	GAA	---	1	1	B.1.177.68	0.015152
ORF1ab/nsp15A1-B	223	E223X	Gaa	Taa	1	1	B.1.177.73	0.000566
ORF1ab/nsp15A1-B	223	E223del	GAA	---	1	1	B.1.177.81	0.000189
ORF1ab/nsp15A1-B	223	E223Q	Gaa	Caa	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	223	E223D	gaA	gaC	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	223	E223L	GAA	CTC	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	223	E223X	Gaa	Taa	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	1	1	B.1.221	0.000071
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	1	1	B.1.221	0.000071
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	1	1	B.1.234	0.000132
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	1	1	B.1.234	0.000132
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	1	1	B.1.258.17	0.000104
ORF1ab/nsp15A1-B	223	E223X	Gaa	Taa	1	1	B.1.301	0.005917
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	1	1	B.1.338	0.008621
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	223	E223del	GAA	---	1	1	B.1.356	0.001727
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	1	1	B.1.36	0.000146
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	1	1	B.1.36	0.000146
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	1	1	B.1.36.8	0.001
ORF1ab/nsp15A1-B	223	E223del	GAA	---	1	1	B.1.375	0.00082
ORF1ab/nsp15A1-B	223	E223D	gaA	gaC	1	1	B.1.399	0.001934
ORF1ab/nsp15A1-B	223	E223del	GAA	---	1	1	B.1.416.1	0.001563
ORF1ab/nsp15A1-B	223	E223D	gaA	gaC	1	1	B.1.427	0.00005
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	1	1	B.1.427	0.00005
ORF1ab/nsp15A1-B	223	E223V	gAa	gTa	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	223	E223D	gaA	gaC	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	223	E223del	GAA	---	1	1	B.1.438.1	0.000107
ORF1ab/nsp15A1-B	223	E223Q	Gaa	Caa	1	1	B.1.438.1	0.000107
ORF1ab/nsp15A1-B	223	E223N	GaA	AaC	1	1	B.1.466.2	0.000391
ORF1ab/nsp15A1-B	223	E223del	GAA	---	1	1	B.1.564	0.000426
ORF1ab/nsp15A1-B	223	E223V	gAa	gTa	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	223	E223del	GAA	---	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	1	1	B.1.599	0.00365
ORF1ab/nsp15A1-B	223	E223V	gAa	gTa	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	223	E223del	GAA	---	1	1	B.1.620	0.000946
ORF1ab/nsp15A1-B	223	E223del	GAA	---	1	1	B.1.621.1	0.000506
ORF1ab/nsp15A1-B	223	E223K	Gaa	Aaa	1	1	B.1.637	0.000073
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	1	1	B.1.637	0.000073
ORF1ab/nsp15A1-B	223	E223A	gAa	gCa	1	1	B.1.637	0.000073
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	1	1	B.1.93	0.000934
ORF1ab/nsp15A1-B	223	E223G	gAa	gGa	1	1	B.3.1	0.001658
ORF1ab/nsp15A1-B	223	E223E	gaA	gaG	1	1	C.37	0.000116
ORF1ab/nsp15A1-B	223	E223del	GAA	---	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	223	E223D	gaA	gaC	1	1	P.1	0.000016
ORF1ab/nsp15A1-B	223	E223V	gAa	gTa	1	1	P.1	0.000016
ORF1ab/nsp15A1-B	223	E223D	gaA	gaC	1	1	P.1.14	0.000048
ORF1ab/nsp15A1-B	223	E223D	gaA	gaT	1	1	Q.1	0.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.