CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 223

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B223E223GE6675GnonsyngAagGa7907890.99873420287-20289
ORF1ab/nsp15A1-B223E223GE6675GnonsyngAAgGC79010.0012658220287-20289
ORF1ab/nsp15A1-B223E223AE6675AnonsyngAagCa477477120287-20289
ORF1ab/nsp15A1-B223E223KE6675KnonsynGaaAaa221221120287-20289
ORF1ab/nsp15A1-B223E223EE6675EsyngaAgaG166166120287-20289
ORF1ab/nsp15A1-B223E223delE6675deldelGAA---6464120287-20289
ORF1ab/nsp15A1-B223E223VE6675VnonsyngAagTa5454120287-20289
ORF1ab/nsp15A1-B223E223DE6675DnonsyngaAgaC32300.937520287-20289
ORF1ab/nsp15A1-B223E223DE6675DnonsyngaAgaT3220.062520287-20289
ORF1ab/nsp15A1-B223E223XE6675XnonsynGaaTaa1919120287-20289
ORF1ab/nsp15A1-B223E223QE6675QnonsynGaaCaa77120287-20289
ORF1ab/nsp15A1-B223E223NE6675NnonsynGaAAaC11120287-20289
ORF1ab/nsp15A1-B223E223LE6675LnonsynGAACTC11120287-20289
ORF1ab/nsp15A1-B223E223RE6675RnonsynGAaAGa11120287-20289
ORF1ab/nsp15A1-B223E223TE6675TnonsynGAaACa11120287-20289

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B223E223GgAagGa789790All0.000151
ORF1ab/nsp15A1-B223E223GgAAgGC1790All0
ORF1ab/nsp15A1-B223E223AgAagCa477477All0.000091
ORF1ab/nsp15A1-B223E223GgAagGa291291B.1.1.2280.887195
ORF1ab/nsp15A1-B223E223GgAagGa254254AY.40.000395
ORF1ab/nsp15A1-B223E223AgAagCa251251AY.34.10.127996
ORF1ab/nsp15A1-B223E223KGaaAaa221221All0.000042
ORF1ab/nsp15A1-B223E223EgaAgaG166166All0.000032
ORF1ab/nsp15A1-B223E223KGaaAaa109109AY.440.000663
ORF1ab/nsp15A1-B223E223AgAagCa7373B.1.1.150.986486
ORF1ab/nsp15A1-B223E223delGAA---6464All0.000012
ORF1ab/nsp15A1-B223E223GgAagGa6262B.1.1.3480.049363
ORF1ab/nsp15A1-B223E223GgAagGa5555B.10.000504
ORF1ab/nsp15A1-B223E223VgAagTa5454All0.00001
ORF1ab/nsp15A1-B223E223AgAagCa4646B.1.20.000405
ORF1ab/nsp15A1-B223E223AgAagCa3737B.1.1.70.000033
ORF1ab/nsp15A1-B223E223GgAagGa3535B.1.6090.016779
ORF1ab/nsp15A1-B223E223DgaAgaC3032All0.000006
ORF1ab/nsp15A1-B223E223DgaAgaT232All0
ORF1ab/nsp15A1-B223E223VgAagTa2929AY.430.000128
ORF1ab/nsp15A1-B223E223EgaAgaG2323B.1.1.70.000021
ORF1ab/nsp15A1-B223E223AgAagCa2121AY.440.000128
ORF1ab/nsp15A1-B223E223XGaaTaa1919All0.000004
ORF1ab/nsp15A1-B223E223KGaaAaa1919B.1.617.20.000072
ORF1ab/nsp15A1-B223E223KGaaAaa1818B.1.1.70.000016
ORF1ab/nsp15A1-B223E223EgaAgaG1818B.1.20.000158
ORF1ab/nsp15A1-B223E223KGaaAaa1515AY.40.000023
ORF1ab/nsp15A1-B223E223GgAagGa1313B.1.1.70.000012
ORF1ab/nsp15A1-B223E223EgaAgaG1010AY.250.00006
ORF1ab/nsp15A1-B223E223GgAagGa99AY.430.00004
ORF1ab/nsp15A1-B223E223KGaaAaa99B.1.1770.000119
ORF1ab/nsp15A1-B223E223VgAagTa99B.1.3510.000268
ORF1ab/nsp15A1-B223E223EgaAgaG99B.1.4290.000212
ORF1ab/nsp15A1-B223E223GgAagGa99B.1.617.20.000034
ORF1ab/nsp15A1-B223E223EgaAgaG88AY.430.000035
ORF1ab/nsp15A1-B223E223EgaAgaG88AY.440.000049
ORF1ab/nsp15A1-B223E223GgAagGa78B.1.20.000062
ORF1ab/nsp15A1-B223E223GgAAgGC18B.1.20.000009
ORF1ab/nsp15A1-B223E223EgaAgaG88P.1.10.002541
ORF1ab/nsp15A1-B223E223QGaaCaa77All0.000001
ORF1ab/nsp15A1-B223E223EgaAgaG77B.1.10.000127
ORF1ab/nsp15A1-B223E223VgAagTa77B.1.1.70.000006
ORF1ab/nsp15A1-B223E223GgAagGa77P.10.00011
ORF1ab/nsp15A1-B223E223EgaAgaG66AY.4.20.00013
ORF1ab/nsp15A1-B223E223delGAA---66B.1.1.70.000005
ORF1ab/nsp15A1-B223E223EgaAgaG66B.1.177.320.008097
ORF1ab/nsp15A1-B223E223EgaAgaG66B.1.617.20.000023
ORF1ab/nsp15A1-B223E223AgAagCa66B.1.617.20.000023
ORF1ab/nsp15A1-B223E223AgAagCa55AY.340.000485
ORF1ab/nsp15A1-B223E223EgaAgaG55AY.40.000008
ORF1ab/nsp15A1-B223E223EgaAgaG55B.1.1.3120.00956
ORF1ab/nsp15A1-B223E223DgaAgaC55B.1.1.70.000004
ORF1ab/nsp15A1-B223E223delGAA---55B.1.20.000044
ORF1ab/nsp15A1-B223E223AgAagCa55B.1.5950.001305
ORF1ab/nsp15A1-B223E223delGAA---55B.1.617.20.000019
ORF1ab/nsp15A1-B223E223delGAA---440.222222
ORF1ab/nsp15A1-B223E223KGaaAaa44AY.1020.000106
ORF1ab/nsp15A1-B223E223EgaAgaG44AY.1030.000025
ORF1ab/nsp15A1-B223E223AgAagCa44AY.1170.000338
ORF1ab/nsp15A1-B223E223DgaAgaC44AY.290.000063
ORF1ab/nsp15A1-B223E223delGAA---44AY.590.002119
ORF1ab/nsp15A1-B223E223XGaaTaa44B.10.000037
ORF1ab/nsp15A1-B223E223AgAagCa44B.1.10.000073
ORF1ab/nsp15A1-B223E223GgAagGa44B.1.1770.000053
ORF1ab/nsp15A1-B223E223EgaAgaG44P.20.000747
ORF1ab/nsp15A1-B223E223GgAagGa33AY.1020.00008
ORF1ab/nsp15A1-B223E223DgaAgaC33AY.1030.000019
ORF1ab/nsp15A1-B223E223AgAagCa33AY.1030.000019
ORF1ab/nsp15A1-B223E223GgAagGa33AY.1200.000112
ORF1ab/nsp15A1-B223E223KGaaAaa33AY.30.00003
ORF1ab/nsp15A1-B223E223AgAagCa33AY.40.000005
ORF1ab/nsp15A1-B223E223GgAagGa33AY.420.000121
ORF1ab/nsp15A1-B223E223KGaaAaa33AY.430.000013
ORF1ab/nsp15A1-B223E223delGAA---33AY.430.000013
ORF1ab/nsp15A1-B223E223KGaaAaa33B.10.000027
ORF1ab/nsp15A1-B223E223XGaaTaa33B.1.10.000054
ORF1ab/nsp15A1-B223E223KGaaAaa33B.1.10.000054
ORF1ab/nsp15A1-B223E223GgAagGa33B.1.10.000054
ORF1ab/nsp15A1-B223E223KGaaAaa33B.1.110.30.002155
ORF1ab/nsp15A1-B223E223EgaAgaG33B.1.3460.003932
ORF1ab/nsp15A1-B223E223EgaAgaG33B.1.5260.000071
ORF1ab/nsp15A1-B223E223delGAA---33P.1.150.000697
ORF1ab/nsp15A1-B223E223KGaaAaa22AY.1010.000981
ORF1ab/nsp15A1-B223E223EgaAgaG22AY.1020.000053
ORF1ab/nsp15A1-B223E223GgAagGa22AY.1030.000012
ORF1ab/nsp15A1-B223E223delGAA---22AY.250.000012
ORF1ab/nsp15A1-B223E223GgAagGa22AY.250.000012
ORF1ab/nsp15A1-B223E223GgAagGa22AY.30.00002
ORF1ab/nsp15A1-B223E223EgaAgaG22AY.30.00002
ORF1ab/nsp15A1-B223E223DgaAgaC22AY.30.00002
ORF1ab/nsp15A1-B223E223KGaaAaa22AY.330.000134
ORF1ab/nsp15A1-B223E223EgaAgaG22AY.360.000296
ORF1ab/nsp15A1-B223E223delGAA---22AY.40.000003
ORF1ab/nsp15A1-B223E223DgaAgaC22AY.40.000003
ORF1ab/nsp15A1-B223E223GgAagGa22AY.440.000012
ORF1ab/nsp15A1-B223E223GgAagGa22AY.460.000208
ORF1ab/nsp15A1-B223E223GgAagGa22AY.46.60.000144
ORF1ab/nsp15A1-B223E223KGaaAaa22AY.470.000062
ORF1ab/nsp15A1-B223E223EgaAgaG22AY.470.000062
ORF1ab/nsp15A1-B223E223VgAagTa22AY.470.000062
ORF1ab/nsp15A1-B223E223GgAagGa22AY.540.000191
ORF1ab/nsp15A1-B223E223GgAagGa22AY.920.000575
ORF1ab/nsp15A1-B223E223EgaAgaG22AY.930.000546
ORF1ab/nsp15A1-B223E223delGAA---22B.10.000018
ORF1ab/nsp15A1-B223E223QGaaCaa22B.10.000018
ORF1ab/nsp15A1-B223E223KGaaAaa22B.1.1.10.000653
ORF1ab/nsp15A1-B223E223QGaaCaa22B.1.1.70.000002
ORF1ab/nsp15A1-B223E223delGAA---22B.1.1600.000062
ORF1ab/nsp15A1-B223E223EgaAgaG22B.1.1770.000026
ORF1ab/nsp15A1-B223E223delGAA---22B.1.177.440.001038
ORF1ab/nsp15A1-B223E223KGaaAaa22B.1.20.000018
ORF1ab/nsp15A1-B223E223delGAA---22B.1.2580.000133
ORF1ab/nsp15A1-B223E223EgaAgaG22B.1.3660.009756
ORF1ab/nsp15A1-B223E223delGAA---22B.1.5170.000854
ORF1ab/nsp15A1-B223E223KGaaAaa22B.1.5750.000607
ORF1ab/nsp15A1-B223E223GgAagGa22B.1.5950.000522
ORF1ab/nsp15A1-B223E223EgaAgaG22B.1.5960.000174
ORF1ab/nsp15A1-B223E223DgaAgaC22B.1.617.20.000008
ORF1ab/nsp15A1-B223E223KGaaAaa22B.60.00182
ORF1ab/nsp15A1-B223E223XGaaTaa22B.60.00182
ORF1ab/nsp15A1-B223E223AgAagCa22D.20.00015
ORF1ab/nsp15A1-B223E223AgAagCa22P.10.000032
ORF1ab/nsp15A1-B223E223delGAA---22P.1.10.000635
ORF1ab/nsp15A1-B223E223GgAagGa22P.1.140.000096
ORF1ab/nsp15A1-B223E223XGaaTaa11A0.000387
ORF1ab/nsp15A1-B223E223DgaAgaC11A.10.000282
ORF1ab/nsp15A1-B223E223QGaaCaa11A.2.20.001689
ORF1ab/nsp15A1-B223E223delGAA---11A.2.40.003367
ORF1ab/nsp15A1-B223E223KGaaAaa11A.2.40.003367
ORF1ab/nsp15A1-B223E223LGAACTC11All0
ORF1ab/nsp15A1-B223E223NGaAAaC11All0
ORF1ab/nsp15A1-B223E223TGAaACa11All0
ORF1ab/nsp15A1-B223E223RGAaAGa11All0
ORF1ab/nsp15A1-B223E223EgaAgaG11AU.20.002421
ORF1ab/nsp15A1-B223E223KGaaAaa11AY.1000.000046
ORF1ab/nsp15A1-B223E223DgaAgaC11AY.1020.000027
ORF1ab/nsp15A1-B223E223KGaaAaa11AY.1030.000006
ORF1ab/nsp15A1-B223E223DgaAgaC11AY.1170.000085
ORF1ab/nsp15A1-B223E223EgaAgaG11AY.1180.000063
ORF1ab/nsp15A1-B223E223KGaaAaa11AY.1190.000035
ORF1ab/nsp15A1-B223E223VgAagTa11AY.1200.000037
ORF1ab/nsp15A1-B223E223RGAaAGa11AY.120.10.000321
ORF1ab/nsp15A1-B223E223KGaaAaa11AY.1210.000135
ORF1ab/nsp15A1-B223E223GgAagGa11AY.20.000356
ORF1ab/nsp15A1-B223E223KGaaAaa11AY.200.000039
ORF1ab/nsp15A1-B223E223GgAagGa11AY.200.000039
ORF1ab/nsp15A1-B223E223delGAA---11AY.200.000039
ORF1ab/nsp15A1-B223E223delGAA---11AY.230.00007
ORF1ab/nsp15A1-B223E223AgAagCa11AY.250.000006
ORF1ab/nsp15A1-B223E223KGaaAaa11AY.260.000028
ORF1ab/nsp15A1-B223E223AgAagCa11AY.290.000016
ORF1ab/nsp15A1-B223E223GgAagGa11AY.290.000016
ORF1ab/nsp15A1-B223E223AgAagCa11AY.390.000025
ORF1ab/nsp15A1-B223E223EgaAgaG11AY.390.000025
ORF1ab/nsp15A1-B223E223AgAagCa11AY.4.20.000022
ORF1ab/nsp15A1-B223E223KGaaAaa11AY.4.2.10.000149
ORF1ab/nsp15A1-B223E223EgaAgaG11AY.420.00004
ORF1ab/nsp15A1-B223E223XGaaTaa11AY.430.000004
ORF1ab/nsp15A1-B223E223DgaAgaC11AY.440.000006
ORF1ab/nsp15A1-B223E223EgaAgaG11AY.460.000104
ORF1ab/nsp15A1-B223E223AgAagCa11AY.46.60.000072
ORF1ab/nsp15A1-B223E223DgaAgaC11AY.470.000031
ORF1ab/nsp15A1-B223E223TGAaACa11AY.50.000021
ORF1ab/nsp15A1-B223E223GgAagGa11AY.5.30.000337
ORF1ab/nsp15A1-B223E223XGaaTaa11AY.520.000814
ORF1ab/nsp15A1-B223E223KGaaAaa11AY.590.00053
ORF1ab/nsp15A1-B223E223EgaAgaG11AY.60.000041
ORF1ab/nsp15A1-B223E223KGaaAaa11AY.730.000665
ORF1ab/nsp15A1-B223E223KGaaAaa11AY.740.000116
ORF1ab/nsp15A1-B223E223KGaaAaa11AY.750.000056
ORF1ab/nsp15A1-B223E223DgaAgaT11AY.75.10.00018
ORF1ab/nsp15A1-B223E223delGAA---11AY.850.000427
ORF1ab/nsp15A1-B223E223KGaaAaa11AY.9.10.000084
ORF1ab/nsp15A1-B223E223KGaaAaa11AY.9.20.000037
ORF1ab/nsp15A1-B223E223AgAagCa11AY.9.20.000037
ORF1ab/nsp15A1-B223E223GgAagGa11B0.000128
ORF1ab/nsp15A1-B223E223VgAagTa11B.10.000009
ORF1ab/nsp15A1-B223E223delGAA---11B.1.10.000018
ORF1ab/nsp15A1-B223E223VgAagTa11B.1.10.000018
ORF1ab/nsp15A1-B223E223XGaaTaa11B.1.1.1640.005155
ORF1ab/nsp15A1-B223E223EgaAgaG11B.1.1.2530.002506
ORF1ab/nsp15A1-B223E223AgAagCa11B.1.1.3010.001179
ORF1ab/nsp15A1-B223E223GgAagGa11B.1.1.3170.000412
ORF1ab/nsp15A1-B223E223EgaAgaG11B.1.1.3170.000412
ORF1ab/nsp15A1-B223E223XGaaTaa11B.1.1.390.00051
ORF1ab/nsp15A1-B223E223DgaAgaC11B.1.1.390.00051
ORF1ab/nsp15A1-B223E223KGaaAaa11B.1.1.390.00051
ORF1ab/nsp15A1-B223E223KGaaAaa11B.1.1.3980.003226
ORF1ab/nsp15A1-B223E223XGaaTaa11B.1.1.4230.0625
ORF1ab/nsp15A1-B223E223AgAagCa11B.1.1.5190.00004
ORF1ab/nsp15A1-B223E223delGAA---11B.1.1.700.000341
ORF1ab/nsp15A1-B223E223EgaAgaG11B.1.1180.006711
ORF1ab/nsp15A1-B223E223EgaAgaG11B.1.160.300.002976
ORF1ab/nsp15A1-B223E223AgAagCa11B.1.1770.000013
ORF1ab/nsp15A1-B223E223delGAA---11B.1.1770.000013
ORF1ab/nsp15A1-B223E223XGaaTaa11B.1.1770.000013
ORF1ab/nsp15A1-B223E223delGAA---11B.1.177.680.015152
ORF1ab/nsp15A1-B223E223XGaaTaa11B.1.177.730.000566
ORF1ab/nsp15A1-B223E223delGAA---11B.1.177.810.000189
ORF1ab/nsp15A1-B223E223QGaaCaa11B.1.20.000009
ORF1ab/nsp15A1-B223E223DgaAgaC11B.1.20.000009
ORF1ab/nsp15A1-B223E223LGAACTC11B.1.20.000009
ORF1ab/nsp15A1-B223E223XGaaTaa11B.1.20.000009
ORF1ab/nsp15A1-B223E223EgaAgaG11B.1.2210.000071
ORF1ab/nsp15A1-B223E223GgAagGa11B.1.2210.000071
ORF1ab/nsp15A1-B223E223AgAagCa11B.1.2340.000132
ORF1ab/nsp15A1-B223E223EgaAgaG11B.1.2340.000132
ORF1ab/nsp15A1-B223E223EgaAgaG11B.1.258.170.000104
ORF1ab/nsp15A1-B223E223XGaaTaa11B.1.3010.005917
ORF1ab/nsp15A1-B223E223KGaaAaa11B.1.3380.008621
ORF1ab/nsp15A1-B223E223EgaAgaG11B.1.3510.00003
ORF1ab/nsp15A1-B223E223AgAagCa11B.1.3510.00003
ORF1ab/nsp15A1-B223E223delGAA---11B.1.3560.001727
ORF1ab/nsp15A1-B223E223AgAagCa11B.1.360.000146
ORF1ab/nsp15A1-B223E223EgaAgaG11B.1.360.000146
ORF1ab/nsp15A1-B223E223AgAagCa11B.1.36.80.001
ORF1ab/nsp15A1-B223E223delGAA---11B.1.3750.00082
ORF1ab/nsp15A1-B223E223DgaAgaC11B.1.3990.001934
ORF1ab/nsp15A1-B223E223delGAA---11B.1.416.10.001563
ORF1ab/nsp15A1-B223E223DgaAgaC11B.1.4270.00005
ORF1ab/nsp15A1-B223E223AgAagCa11B.1.4270.00005
ORF1ab/nsp15A1-B223E223VgAagTa11B.1.4290.000024
ORF1ab/nsp15A1-B223E223GgAagGa11B.1.4290.000024
ORF1ab/nsp15A1-B223E223DgaAgaC11B.1.4290.000024
ORF1ab/nsp15A1-B223E223delGAA---11B.1.438.10.000107
ORF1ab/nsp15A1-B223E223QGaaCaa11B.1.438.10.000107
ORF1ab/nsp15A1-B223E223NGaAAaC11B.1.466.20.000391
ORF1ab/nsp15A1-B223E223delGAA---11B.1.5640.000426
ORF1ab/nsp15A1-B223E223VgAagTa11B.1.5960.000087
ORF1ab/nsp15A1-B223E223delGAA---11B.1.5960.000087
ORF1ab/nsp15A1-B223E223EgaAgaG11B.1.5990.00365
ORF1ab/nsp15A1-B223E223VgAagTa11B.1.617.20.000004
ORF1ab/nsp15A1-B223E223delGAA---11B.1.6200.000946
ORF1ab/nsp15A1-B223E223delGAA---11B.1.621.10.000506
ORF1ab/nsp15A1-B223E223KGaaAaa11B.1.6370.000073
ORF1ab/nsp15A1-B223E223GgAagGa11B.1.6370.000073
ORF1ab/nsp15A1-B223E223AgAagCa11B.1.6370.000073
ORF1ab/nsp15A1-B223E223GgAagGa11B.1.930.000934
ORF1ab/nsp15A1-B223E223GgAagGa11B.3.10.001658
ORF1ab/nsp15A1-B223E223EgaAgaG11C.370.000116
ORF1ab/nsp15A1-B223E223delGAA---11D.20.000075
ORF1ab/nsp15A1-B223E223DgaAgaC11P.10.000016
ORF1ab/nsp15A1-B223E223VgAagTa11P.10.000016
ORF1ab/nsp15A1-B223E223DgaAgaC11P.1.140.000048
ORF1ab/nsp15A1-B223E223DgaAgaT11Q.10.000126