CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 222 | I222V | I6674V | nonsyn | Att | Gtt | 665 | 665 | 1 | 20284-20286 |
ORF1ab/nsp15A1-B | 222 | I222S | I6674S | nonsyn | ATt | TCt | 644 | 617 | 0.958075 | 20284-20286 |
ORF1ab/nsp15A1-B | 222 | I222S | I6674S | nonsyn | aTt | aGt | 644 | 27 | 0.0419255 | 20284-20286 |
ORF1ab/nsp15A1-B | 222 | I222I | I6674I | syn | atT | atC | 300 | 225 | 0.75 | 20284-20286 |
ORF1ab/nsp15A1-B | 222 | I222I | I6674I | syn | atT | atA | 300 | 75 | 0.25 | 20284-20286 |
ORF1ab/nsp15A1-B | 222 | I222N | I6674N | nonsyn | aTt | aAt | 107 | 103 | 0.962617 | 20284-20286 |
ORF1ab/nsp15A1-B | 222 | I222N | I6674N | nonsyn | aTT | aAC | 107 | 4 | 0.0373832 | 20284-20286 |
ORF1ab/nsp15A1-B | 222 | I222T | I6674T | nonsyn | aTt | aCt | 72 | 71 | 0.986111 | 20284-20286 |
ORF1ab/nsp15A1-B | 222 | I222T | I6674T | nonsyn | aTT | aCC | 72 | 1 | 0.0138889 | 20284-20286 |
ORF1ab/nsp15A1-B | 222 | I222del | I6674del | del | ATT | --- | 61 | 61 | 1 | 20284-20286 |
ORF1ab/nsp15A1-B | 222 | I222F | I6674F | nonsyn | Att | Ttt | 20 | 20 | 1 | 20284-20286 |
ORF1ab/nsp15A1-B | 222 | I222L | I6674L | nonsyn | Att | Ctt | 20 | 19 | 0.95 | 20284-20286 |
ORF1ab/nsp15A1-B | 222 | I222L | I6674L | nonsyn | AtT | TtA | 20 | 1 | 0.05 | 20284-20286 |
ORF1ab/nsp15A1-B | 222 | I222M | I6674M | nonsyn | atT | atG | 16 | 16 | 1 | 20284-20286 |
ORF1ab/nsp15A1-B | 222 | I222H | I6674H | nonsyn | ATt | CAt | 9 | 9 | 1 | 20284-20286 |
ORF1ab/nsp15A1-B | 222 | I222Y | I6674Y | nonsyn | ATt | TAt | 3 | 3 | 1 | 20284-20286 |
ORF1ab/nsp15A1-B | 222 | I222del1 | I6674del1 | del | aTt | a-t | 2 | 1 | 0.5 | 20284-20286 |
ORF1ab/nsp15A1-B | 222 | I222del1 | I6674del1 | del | atT | at- | 2 | 1 | 0.5 | 20284-20286 |
ORF1ab/nsp15A1-B | 222 | I222D | I6674D | nonsyn | ATt | GAt | 1 | 1 | 1 | 20284-20286 |
ORF1ab/nsp15A1-B | 222 | I222A | I6674A | nonsyn | ATt | GCt | 1 | 1 | 1 | 20284-20286 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 665 | 665 | All | 0.000127 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 617 | 644 | All | 0.000118 |
ORF1ab/nsp15A1-B | 222 | I222S | aTt | aGt | 27 | 644 | All | 0.000005 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 480 | 480 | B.1.1.7 | 0.00043 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 225 | 300 | All | 0.000043 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atA | 75 | 300 | All | 0.000014 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 281 | 281 | B.1.177.23 | 0.909385 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 103 | 107 | All | 0.00002 |
ORF1ab/nsp15A1-B | 222 | I222N | aTT | aAC | 4 | 107 | All | 0.000001 |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 71 | 72 | All | 0.000014 |
ORF1ab/nsp15A1-B | 222 | I222T | aTT | aCC | 1 | 72 | All | 0 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 61 | 61 | All | 0.000012 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 57 | 57 | B.1.160 | 0.001778 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 46 | 55 | B.1.1.7 | 0.000041 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atA | 9 | 55 | B.1.1.7 | 0.000008 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 51 | 51 | AY.103 | 0.000317 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 38 | 38 | B.1.1.434 | 0.013245 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 35 | 35 | B.1.1.144 | 1 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 35 | 35 | B.1.177 | 0.000461 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atA | 35 | 35 | B.1.429 | 0.000824 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 32 | 33 | AY.4 | 0.00005 |
ORF1ab/nsp15A1-B | 222 | I222S | aTt | aGt | 1 | 33 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 27 | 27 | AY.42 | 0.001086 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 25 | 26 | B.1.2 | 0.00022 |
ORF1ab/nsp15A1-B | 222 | I222S | aTt | aGt | 1 | 26 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 24 | 24 | B.1.1.450 | 0.827586 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 22 | 23 | B.1.160 | 0.000686 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atA | 1 | 23 | B.1.160 | 0.000031 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 17 | 21 | AY.4 | 0.000026 |
ORF1ab/nsp15A1-B | 222 | I222N | aTT | aAC | 4 | 21 | AY.4 | 0.000006 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 20 | 21 | B.1.1 | 0.000363 |
ORF1ab/nsp15A1-B | 222 | I222S | aTt | aGt | 1 | 21 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 21 | 21 | B.1.1.7 | 0.000019 |
ORF1ab/nsp15A1-B | 222 | I222F | Att | Ttt | 20 | 20 | All | 0.000004 |
ORF1ab/nsp15A1-B | 222 | I222L | Att | Ctt | 19 | 20 | All | 0.000004 |
ORF1ab/nsp15A1-B | 222 | I222L | AtT | TtA | 1 | 20 | All | 0 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 17 | 19 | B.1.617.2 | 0.000064 |
ORF1ab/nsp15A1-B | 222 | I222S | aTt | aGt | 2 | 19 | B.1.617.2 | 0.000008 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 17 | 17 | B.1.1.7 | 0.000015 |
ORF1ab/nsp15A1-B | 222 | I222M | atT | atG | 16 | 16 | All | 0.000003 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 16 | 16 | AY.103 | 0.000099 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 11 | 11 | B.1.595 | 0.002871 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 10 | 10 | AY.29 | 0.000158 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 10 | 10 | AY.33 | 0.000668 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 10 | 10 | B.1.177 | 0.000132 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 10 | 10 | B.1.258 | 0.000665 |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp15A1-B | 222 | I222H | ATt | CAt | 9 | 9 | All | 0.000002 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atA | 8 | 8 | B.1.1.70 | 0.002729 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 7 | 7 | AY.121 | 0.000947 |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp15A1-B | 222 | I222S | aTt | aGt | 6 | 7 | AY.9.2 | 0.00022 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 7 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 6 | 6 | B.1.177.81 | 0.001136 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 5 | 6 | B.1.2 | 0.000044 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atA | 1 | 6 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 3 | 5 | B.1 | 0.000027 |
ORF1ab/nsp15A1-B | 222 | I222S | aTt | aGt | 2 | 5 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 5 | 5 | B.1.1.306 | 0.002192 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 5 | 5 | B.40 | 0.001821 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atA | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp15A1-B | 222 | I222M | atT | atG | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp15A1-B | 222 | I222F | Att | Ttt | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 4 | 4 | B.1.330 | 0.114286 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 4 | 4 | B.4 | 0.00883 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 4 | 4 | C.14 | 0.017316 |
ORF1ab/nsp15A1-B | 222 | I222L | Att | Ctt | 4 | 4 | C.4 | 0.04 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atA | 3 | 4 | P.1.9 | 0.014423 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 1 | 4 | P.1.9 | 0.004808 |
ORF1ab/nsp15A1-B | 222 | I222Y | ATt | TAt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp15A1-B | 222 | I222M | atT | atG | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 3 | 3 | AY.39.2 | 0.004622 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atA | 2 | 3 | AY.44 | 0.000012 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 1 | 3 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atA | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 3 | 3 | B.1.1.220 | 0.005576 |
ORF1ab/nsp15A1-B | 222 | I222L | Att | Ctt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp15A1-B | 222 | I222M | atT | atG | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 3 | 3 | B.1.239 | 0.003663 |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp15A1-B | 222 | I222S | aTt | aGt | 3 | 3 | B.1.565 | 0.002431 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp15A1-B | 222 | I222del1 | aTt | a-t | 1 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 222 | I222del1 | atT | at- | 1 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atA | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 2 | 2 | AY.4.1 | 0.001475 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 222 | I222H | ATt | CAt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 222 | I222H | ATt | CAt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 1 | 2 | AY.47 | 0.000031 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atA | 1 | 2 | AY.47 | 0.000031 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp15A1-B | 222 | I222L | Att | Ctt | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atA | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 2 | 2 | B.1.160.20 | 0.017857 |
ORF1ab/nsp15A1-B | 222 | I222S | aTt | aGt | 2 | 2 | B.1.167 | 0.015625 |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp15A1-B | 222 | I222F | Att | Ttt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 2 | 2 | B.1.177.35 | 0.001382 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp15A1-B | 222 | I222F | Att | Ttt | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp15A1-B | 222 | I222F | Att | Ttt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp15A1-B | 222 | I222S | aTt | aGt | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atA | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp15A1-B | 222 | I222M | atT | atG | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 1 | 1 | 0.055556 | |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 1 | 1 | 0.055556 | |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 1 | 0.055556 | |
ORF1ab/nsp15A1-B | 222 | I222F | Att | Ttt | 1 | 1 | 0.055556 | |
ORF1ab/nsp15A1-B | 222 | I222A | ATt | GCt | 1 | 1 | 0.055556 | |
ORF1ab/nsp15A1-B | 222 | I222D | ATt | GAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp15A1-B | 222 | I222Y | ATt | TAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atA | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp15A1-B | 222 | I222D | ATt | GAt | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 222 | I222A | ATt | GCt | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp15A1-B | 222 | I222M | atT | atG | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp15A1-B | 222 | I222L | Att | Ctt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atA | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp15A1-B | 222 | I222M | atT | atG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 222 | I222F | Att | Ttt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp15A1-B | 222 | I222S | aTt | aGt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 222 | I222H | ATt | CAt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp15A1-B | 222 | I222F | Att | Ttt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp15A1-B | 222 | I222L | Att | Ctt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 222 | I222T | aTT | aCC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 222 | I222F | Att | Ttt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp15A1-B | 222 | I222H | ATt | CAt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp15A1-B | 222 | I222H | ATt | CAt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atA | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp15A1-B | 222 | I222H | ATt | CAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 222 | I222F | Att | Ttt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 222 | I222Y | ATt | TAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 222 | I222Y | ATt | TAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 222 | I222L | AtT | TtA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 222 | I222S | aTt | aGt | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp15A1-B | 222 | I222F | Att | Ttt | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 1 | 1 | B.1.1.203 | 0.016949 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp15A1-B | 222 | I222L | Att | Ctt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp15A1-B | 222 | I222L | Att | Ctt | 1 | 1 | B.1.1.404 | 0.015873 |
ORF1ab/nsp15A1-B | 222 | I222S | aTt | aGt | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 1 | 1 | B.1.1.424 | 0.045455 |
ORF1ab/nsp15A1-B | 222 | I222F | Att | Ttt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp15A1-B | 222 | I222H | ATt | CAt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp15A1-B | 222 | I222S | aTt | aGt | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp15A1-B | 222 | I222M | atT | atG | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 222 | I222del1 | aTt | a-t | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 222 | I222F | Att | Ttt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp15A1-B | 222 | I222S | aTt | aGt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp15A1-B | 222 | I222F | Att | Ttt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp15A1-B | 222 | I222F | Att | Ttt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp15A1-B | 222 | I222L | Att | Ctt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 222 | I222M | atT | atG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp15A1-B | 222 | I222L | Att | Ctt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atA | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atA | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 222 | I222L | Att | Ctt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 222 | I222del1 | atT | at- | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp15A1-B | 222 | I222L | Att | Ctt | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp15A1-B | 222 | I222V | Att | Gtt | 1 | 1 | B.1.556 | 0.007519 |
ORF1ab/nsp15A1-B | 222 | I222L | Att | Ctt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp15A1-B | 222 | I222S | aTt | aGt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp15A1-B | 222 | I222L | Att | Ctt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atA | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp15A1-B | 222 | I222S | aTt | aGt | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp15A1-B | 222 | I222T | aTt | aCt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp15A1-B | 222 | I222N | aTt | aAt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp15A1-B | 222 | I222del | ATT | --- | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp15A1-B | 222 | I222I | atT | atC | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp15A1-B | 222 | I222S | ATt | TCt | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|