CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 217 & Codon = Tct

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B217A217SA6669SnonsynGctTct35533553120269-20271

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B217A217SGctTct35533553All0.00068
ORF1ab/nsp15A1-B217A217SGctTct19061906AY.60.078391
ORF1ab/nsp15A1-B217A217SGctTct455455B.1.1.70.000407
ORF1ab/nsp15A1-B217A217SGctTct298298AY.98.10.014432
ORF1ab/nsp15A1-B217A217SGctTct141141AY.40.000219
ORF1ab/nsp15A1-B217A217SGctTct8080B.1.617.20.000301
ORF1ab/nsp15A1-B217A217SGctTct6363AY.390.001557
ORF1ab/nsp15A1-B217A217SGctTct6161AY.1020.001617
ORF1ab/nsp15A1-B217A217SGctTct3838AY.1080.041896
ORF1ab/nsp15A1-B217A217SGctTct3434AY.1200.001264
ORF1ab/nsp15A1-B217A217SGctTct3434AY.430.000151
ORF1ab/nsp15A1-B217A217SGctTct3434B.1.1.5190.00135
ORF1ab/nsp15A1-B217A217SGctTct3333AY.1030.000205
ORF1ab/nsp15A1-B217A217SGctTct2929AY.330.001937
ORF1ab/nsp15A1-B217A217SGctTct2222B.1.1770.00029
ORF1ab/nsp15A1-B217A217SGctTct2121AY.130.003381
ORF1ab/nsp15A1-B217A217SGctTct2020B.1.177.600.004369
ORF1ab/nsp15A1-B217A217SGctTct1919AY.46.60.001372
ORF1ab/nsp15A1-B217A217SGctTct1818B.1.617.10.002321
ORF1ab/nsp15A1-B217A217SGctTct1616B.1.10.00029
ORF1ab/nsp15A1-B217A217SGctTct1616B.1.1.3440.172043
ORF1ab/nsp15A1-B217A217SGctTct1414B.10.000128
ORF1ab/nsp15A1-B217A217SGctTct1313B.1.20.000114
ORF1ab/nsp15A1-B217A217SGctTct99AY.250.000054
ORF1ab/nsp15A1-B217A217SGctTct99AY.540.000858
ORF1ab/nsp15A1-B217A217SGctTct88AY.1210.001083
ORF1ab/nsp15A1-B217A217SGctTct88AY.30.00008
ORF1ab/nsp15A1-B217A217SGctTct88AY.50.000165
ORF1ab/nsp15A1-B217A217SGctTct88B.1.1.1930.888889
ORF1ab/nsp15A1-B217A217SGctTct77AY.420.000282
ORF1ab/nsp15A1-B217A217SGctTct77B.1.177.480.021875
ORF1ab/nsp15A1-B217A217SGctTct66AY.230.000418
ORF1ab/nsp15A1-B217A217SGctTct55AY.440.00003
ORF1ab/nsp15A1-B217A217SGctTct44AY.3.10.000341
ORF1ab/nsp15A1-B217A217SGctTct44B.1.1.4190.02963
ORF1ab/nsp15A1-B217A217SGctTct44B.1.2400.000862
ORF1ab/nsp15A1-B217A217SGctTct44B.1.360.000584
ORF1ab/nsp15A1-B217A217SGctTct33AY.1000.000138
ORF1ab/nsp15A1-B217A217SGctTct33AY.260.000085
ORF1ab/nsp15A1-B217A217SGctTct33AY.290.000047
ORF1ab/nsp15A1-B217A217SGctTct33AY.450.000365
ORF1ab/nsp15A1-B217A217SGctTct33AY.5.30.001012
ORF1ab/nsp15A1-B217A217SGctTct33AY.980.000237
ORF1ab/nsp15A1-B217A217SGctTct33B.1.1.2310.009288
ORF1ab/nsp15A1-B217A217SGctTct22AY.1050.001286
ORF1ab/nsp15A1-B217A217SGctTct22AY.1110.000366
ORF1ab/nsp15A1-B217A217SGctTct22AY.4.20.000043
ORF1ab/nsp15A1-B217A217SGctTct22AY.400.001929
ORF1ab/nsp15A1-B217A217SGctTct22AY.460.000208
ORF1ab/nsp15A1-B217A217SGctTct22AY.46.10.002053
ORF1ab/nsp15A1-B217A217SGctTct22AY.840.000875
ORF1ab/nsp15A1-B217A217SGctTct22B.1.1.1170.019417
ORF1ab/nsp15A1-B217A217SGctTct22B.1.1.2220.000408
ORF1ab/nsp15A1-B217A217SGctTct22B.1.1.3180.000604
ORF1ab/nsp15A1-B217A217SGctTct22B.1.1.3720.001377
ORF1ab/nsp15A1-B217A217SGctTct22B.1.1.5250.010929
ORF1ab/nsp15A1-B217A217SGctTct22B.1.2580.000133
ORF1ab/nsp15A1-B217A217SGctTct22B.1.258.110.000793
ORF1ab/nsp15A1-B217A217SGctTct22B.1.5260.000047
ORF1ab/nsp15A1-B217A217SGctTct22B.1.6210.000177
ORF1ab/nsp15A1-B217A217SGctTct22B.1.9.50.011364
ORF1ab/nsp15A1-B217A217SGctTct22P.1.10.000635
ORF1ab/nsp15A1-B217A217SGctTct11AY.1140.000231
ORF1ab/nsp15A1-B217A217SGctTct11AY.1160.000287
ORF1ab/nsp15A1-B217A217SGctTct11AY.1170.000085
ORF1ab/nsp15A1-B217A217SGctTct11AY.1190.000035
ORF1ab/nsp15A1-B217A217SGctTct11AY.120.000316
ORF1ab/nsp15A1-B217A217SGctTct11AY.200.000039
ORF1ab/nsp15A1-B217A217SGctTct11AY.320.000532
ORF1ab/nsp15A1-B217A217SGctTct11AY.34.10.00051
ORF1ab/nsp15A1-B217A217SGctTct11AY.46.50.000198
ORF1ab/nsp15A1-B217A217SGctTct11AY.470.000031
ORF1ab/nsp15A1-B217A217SGctTct11AY.520.000814
ORF1ab/nsp15A1-B217A217SGctTct11AY.550.000917
ORF1ab/nsp15A1-B217A217SGctTct11AY.580.000907
ORF1ab/nsp15A1-B217A217SGctTct11AY.670.000464
ORF1ab/nsp15A1-B217A217SGctTct11AY.690.000187
ORF1ab/nsp15A1-B217A217SGctTct11AY.70.000196
ORF1ab/nsp15A1-B217A217SGctTct11AY.7.10.000113
ORF1ab/nsp15A1-B217A217SGctTct11AY.770.001127
ORF1ab/nsp15A1-B217A217SGctTct11AY.790.001211
ORF1ab/nsp15A1-B217A217SGctTct11AY.850.000427
ORF1ab/nsp15A1-B217A217SGctTct11AY.920.000287
ORF1ab/nsp15A1-B217A217SGctTct11AY.950.000761
ORF1ab/nsp15A1-B217A217SGctTct11B0.000128
ORF1ab/nsp15A1-B217A217SGctTct11B.1.1.3060.000438
ORF1ab/nsp15A1-B217A217SGctTct11B.1.1.3860.066667
ORF1ab/nsp15A1-B217A217SGctTct11B.1.160.330.004425
ORF1ab/nsp15A1-B217A217SGctTct11B.1.177.770.000726
ORF1ab/nsp15A1-B217A217SGctTct11B.1.177.870.000728
ORF1ab/nsp15A1-B217A217SGctTct11B.1.2210.000071
ORF1ab/nsp15A1-B217A217SGctTct11B.1.2430.00007
ORF1ab/nsp15A1-B217A217SGctTct11B.1.36.290.000517
ORF1ab/nsp15A1-B217A217SGctTct11B.1.3690.000285
ORF1ab/nsp15A1-B217A217SGctTct11B.1.4290.000024
ORF1ab/nsp15A1-B217A217SGctTct11B.1.438.10.000107
ORF1ab/nsp15A1-B217A217SGctTct11B.1.5600.00463
ORF1ab/nsp15A1-B217A217SGctTct11B.1.5820.000491
ORF1ab/nsp15A1-B217A217SGctTct11B.1.5960.000087
ORF1ab/nsp15A1-B217A217SGctTct11D.20.000075
ORF1ab/nsp15A1-B217A217SGctTct11N.90.005952
ORF1ab/nsp15A1-B217A217SGctTct11P.1.160.000374

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.