CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 217

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp15A1-B	217	A217S	A6669S	nonsyn	Gct	Tct	3553	3553	1	20269-20271
ORF1ab/nsp15A1-B	217	A217V	A6669V	nonsyn	gCt	gTt	2609	2607	0.999233	20269-20271
ORF1ab/nsp15A1-B	217	A217V	A6669V	nonsyn	gCT	gTC	2609	2	0.000766577	20269-20271
ORF1ab/nsp15A1-B	217	A217T	A6669T	nonsyn	Gct	Act	137	137	1	20269-20271
ORF1ab/nsp15A1-B	217	A217A	A6669A	syn	gcT	gcC	135	97	0.718518	20269-20271
ORF1ab/nsp15A1-B	217	A217A	A6669A	syn	gcT	gcA	135	32	0.237037	20269-20271
ORF1ab/nsp15A1-B	217	A217A	A6669A	syn	gcT	gcG	135	6	0.0444444	20269-20271
ORF1ab/nsp15A1-B	217	A217D	A6669D	nonsyn	gCt	gAt	76	76	1	20269-20271
ORF1ab/nsp15A1-B	217	A217del	A6669del	del	GCT	---	68	68	1	20269-20271
ORF1ab/nsp15A1-B	217	A217P	A6669P	nonsyn	Gct	Cct	12	11	0.916667	20269-20271
ORF1ab/nsp15A1-B	217	A217P	A6669P	nonsyn	GcT	CcA	12	1	0.0833333	20269-20271
ORF1ab/nsp15A1-B	217	A217G	A6669G	nonsyn	gCt	gGt	10	10	1	20269-20271
ORF1ab/nsp15A1-B	217	A217del1	A6669del1	del	gcT	gc-	6	4	0.666667	20269-20271
ORF1ab/nsp15A1-B	217	A217del1	A6669del1	del	Gct	-ct	6	1	0.166667	20269-20271
ORF1ab/nsp15A1-B	217	A217del1	A6669del1	del	GcT	Ac-	6	1	0.166667	20269-20271
ORF1ab/nsp15A1-B	217	A217C	A6669C	nonsyn	GCT	TGC	1	1	1	20269-20271
ORF1ab/nsp15A1-B	217	A217F	A6669F	nonsyn	GCt	TTt	1	1	1	20269-20271
ORF1ab/nsp15A1-B	217	A217I	A6669I	nonsyn	GCt	ATt	1	1	1	20269-20271
ORF1ab/nsp15A1-B	217	A217E	A6669E	nonsyn	gCT	gAA	1	1	1	20269-20271

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	3553	3553	All	0.00068
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	2607	2609	All	0.000499
ORF1ab/nsp15A1-B	217	A217V	gCT	gTC	2	2609	All	0
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1906	1906	AY.6	0.078391
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	657	657	AP.1	0.986486
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	482	482	B.1.1.7	0.000431
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	455	455	B.1.1.7	0.000407
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	387	387	AY.5	0.007991
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	318	318	B.23	0.929825
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	298	298	AY.98.1	0.014432
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	141	141	AY.4	0.000219
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	137	137	All	0.000026
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	97	135	All	0.000019
ORF1ab/nsp15A1-B	217	A217A	gcT	gcA	32	135	All	0.000006
ORF1ab/nsp15A1-B	217	A217A	gcT	gcG	6	135	All	0.000001
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	81	81	AY.103	0.000503
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	80	80	B.1.617.2	0.000301
ORF1ab/nsp15A1-B	217	A217D	gCt	gAt	76	76	All	0.000015
ORF1ab/nsp15A1-B	217	A217del	GCT	---	68	68	All	0.000013
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	63	63	AY.39	0.001557
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	61	61	AY.102	0.001617
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	59	59	AY.46.4	0.009706
ORF1ab/nsp15A1-B	217	A217D	gCt	gAt	58	58	B.1.595	0.015136
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	50	50	AY.4	0.000078
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	43	43	B.1	0.000394
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	42	43	B.1.617.2	0.000158
ORF1ab/nsp15A1-B	217	A217V	gCT	gTC	1	43	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	38	38	AY.108	0.041896
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	34	34	AY.120	0.001264
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	34	34	AY.43	0.000151
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	34	34	B.1.1.519	0.00135
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	34	34	B.1.1.70	0.011596
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	34	34	B.1.2	0.000299
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	34	34	P.1	0.000536
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	33	33	AY.103	0.000205
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	31	31	AY.25	0.000186
ORF1ab/nsp15A1-B	217	A217A	gcT	gcA	20	30	AY.4	0.000031
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	10	30	AY.4	0.000016
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	29	29	AY.33	0.001937
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	29	29	B.1.160	0.000904
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	25	25	B.1.1.1	0.008167
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	22	22	AY.27	0.001424
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	22	22	B.1.177	0.00029
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	21	21	AY.13	0.003381
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	21	21	B.1.1.7	0.000019
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	20	20	AY.44	0.000122
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	20	20	B.1.177.60	0.004369
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	19	19	AY.46.6	0.001372
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	19	19	AY.47	0.000591
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	18	18	B.1.617.1	0.002321
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	17	17	AY.43	0.000075
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	17	17	B.1.1.214	0.000943
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	17	17	B.1.429	0.0004
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	16	16	AY.39	0.000395
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	16	16	B.1.1	0.00029
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	16	16	B.1.1.344	0.172043
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	15	15	B.1.1	0.000272
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	13	14	AY.44	0.000079
ORF1ab/nsp15A1-B	217	A217V	gCT	gTC	1	14	AY.44	0.000006
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	14	14	B.1	0.000128
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	14	14	B.1.1.519	0.000556
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	13	13	B.1.2	0.000114
ORF1ab/nsp15A1-B	217	A217P	Gct	Cct	11	12	All	0.000002
ORF1ab/nsp15A1-B	217	A217P	GcT	CcA	1	12	All	0
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	12	12	AY.26	0.00034
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	12	12	AY.29	0.000189
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	10	11	B.1.1.7	0.000009
ORF1ab/nsp15A1-B	217	A217A	gcT	gcA	1	11	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	10	11	B.1.609	0.004794
ORF1ab/nsp15A1-B	217	A217A	gcT	gcG	1	11	B.1.609	0.000479
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	11	11	B.1.617.2	0.000041
ORF1ab/nsp15A1-B	217	A217G	gCt	gGt	10	10	All	0.000002
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	9	9	AY.25	0.000054
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	9	9	AY.54	0.000858
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	7	9	B.1.1	0.000127
ORF1ab/nsp15A1-B	217	A217A	gcT	gcA	2	9	B.1.1	0.000036
ORF1ab/nsp15A1-B	217	A217del	GCT	---	9	9	B.1.1.7	0.000008
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	9	9	B.1.526	0.000212
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	8	8	AY.121	0.001083
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	8	8	AY.3	0.00008
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	8	8	AY.5	0.000165
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	8	8	B.1.1.193	0.888889
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	8	8	B.1.126	0.010204
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	8	8	B.1.177	0.000105
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	7	7	AY.42	0.000282
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	7	7	B	0.000895
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	7	7	B.1.177.48	0.021875
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	7	7	B.1.2	0.000062
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	7	7	B.1.637	0.000512
ORF1ab/nsp15A1-B	217	A217del1	gcT	gc-	4	6	All	0.000001
ORF1ab/nsp15A1-B	217	A217del1	Gct	-ct	1	6	All	0
ORF1ab/nsp15A1-B	217	A217del1	GcT	Ac-	1	6	All	0
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	6	6	AY.23	0.000418
ORF1ab/nsp15A1-B	217	A217del	GCT	---	6	6	AY.25	0.000036
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	6	6	AY.4	0.000009
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	6	6	AY.4.2	0.00013
ORF1ab/nsp15A1-B	217	A217del	GCT	---	6	6	AY.43	0.000027
ORF1ab/nsp15A1-B	217	A217D	gCt	gAt	6	6	B.1	0.000055
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	5	5	AY.100	0.00023
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	5	5	AY.44	0.00003
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	5	5	AY.45	0.000608
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	5	5	AY.7	0.00098
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	5	5	B.1.2	0.000044
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	5	5	B.1.258	0.000333
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	5	5	R.1	0.00045
ORF1ab/nsp15A1-B	217	A217del	GCT	---	4	4		0.222222
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	4	4	AY.103	0.000025
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	4	4	AY.29	0.000063
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	4	4	AY.3	0.00004
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	3	4	AY.3	0.00003
ORF1ab/nsp15A1-B	217	A217A	gcT	gcA	1	4	AY.3	0.00001
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	4	4	AY.3.1	0.000341
ORF1ab/nsp15A1-B	217	A217del	GCT	---	4	4	AY.4	0.000006
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	4	4	AY.4.4	0.001637
ORF1ab/nsp15A1-B	217	A217del	GCT	---	4	4	AY.59	0.002119
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	4	4	AY.59	0.002119
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	4	4	B.1.1.222	0.000816
ORF1ab/nsp15A1-B	217	A217P	Gct	Cct	4	4	B.1.1.284	0.00043
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	4	4	B.1.1.419	0.02963
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	4	4	B.1.177	0.000053
ORF1ab/nsp15A1-B	217	A217del	GCT	---	4	4	B.1.2	0.000035
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	4	4	B.1.240	0.000862
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	4	4	B.1.36	0.000584
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	4	4	B.1.526	0.000094
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	3	3	AY.100	0.000138
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	3	3	AY.119	0.000106
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	3	3	AY.13	0.000483
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	3	3	AY.20	0.000117
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	3	3	AY.26	0.000085
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	3	3	AY.29	0.000047
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	3	3	AY.3	0.00003
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	3	3	AY.30	0.001187
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	3	3	AY.45	0.000365
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	3	3	AY.5.3	0.001012
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	3	3	AY.9.2	0.00011
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	3	3	AY.98	0.000237
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	3	3	B.1.1.231	0.009288
ORF1ab/nsp15A1-B	217	A217D	gCt	gAt	3	3	B.1.1.7	0.000003
ORF1ab/nsp15A1-B	217	A217D	gCt	gAt	3	3	B.1.2	0.000026
ORF1ab/nsp15A1-B	217	A217del	GCT	---	3	3	B.1.258	0.0002
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	3	3	B.1.340	0.012876
ORF1ab/nsp15A1-B	217	A217A	gcT	gcG	3	3	C.37	0.000348
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	2	3	P.1	0.000032
ORF1ab/nsp15A1-B	217	A217A	gcT	gcA	1	3	P.1	0.000016
ORF1ab/nsp15A1-B	217	A217del	GCT	---	3	3	P.1.15	0.000697
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	3	3	P.2	0.00056
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	2	2	AY.102	0.000053
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	2	2	AY.105	0.001286
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	2	2	AY.111	0.000366
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	2	2	AY.117	0.000169
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	2	2	AY.120	0.000074
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	2	2	AY.25	0.000012
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	2	2	AY.3.1	0.000171
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	2	2	AY.33	0.000134
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	1	2	AY.39	0.000025
ORF1ab/nsp15A1-B	217	A217A	gcT	gcA	1	2	AY.39	0.000025
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	2	2	AY.4.2	0.000043
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	2	2	AY.4.5	0.000215
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	2	2	AY.40	0.001929
ORF1ab/nsp15A1-B	217	A217D	gCt	gAt	2	2	AY.43	0.000009
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	2	2	AY.46	0.000208
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	2	2	AY.46.1	0.002053
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	2	2	AY.61	0.00021
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	2	2	AY.75	0.000112
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	2	2	AY.84	0.000875
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	2	2	AY.90	0.001369
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	2	2	B.1	0.000018
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	2	2	B.1.1.117	0.019417
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	2	2	B.1.1.222	0.000408
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	2	2	B.1.1.25	0.001137
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	2	2	B.1.1.318	0.000604
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	2	2	B.1.1.372	0.001377
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	2	2	B.1.1.525	0.010929
ORF1ab/nsp15A1-B	217	A217P	Gct	Cct	2	2	B.1.1.7	0.000002
ORF1ab/nsp15A1-B	217	A217del1	gcT	gc-	1	2	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	217	A217del1	Gct	-ct	1	2	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	2	2	B.1.177.75	0.002081
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	2	2	B.1.221	0.000142
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	2	2	B.1.234	0.000264
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	2	2	B.1.258	0.000133
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	2	2	B.1.258.11	0.000793
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	2	2	B.1.315	0.012121
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	2	2	B.1.36	0.000292
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	2	2	B.1.466.2	0.000782
ORF1ab/nsp15A1-B	217	A217G	gCt	gGt	2	2	B.1.466.2	0.000782
ORF1ab/nsp15A1-B	217	A217del	GCT	---	2	2	B.1.517	0.000854
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	2	2	B.1.526	0.000047
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	2	2	B.1.617.2	0.000008
ORF1ab/nsp15A1-B	217	A217del	GCT	---	2	2	B.1.617.2	0.000008
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	2	2	B.1.621	0.000177
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	2	2	B.1.621	0.000177
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	2	2	B.1.628	0.000705
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	2	2	B.1.9.5	0.011364
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	2	2	C.1	0.004785
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	2	2	C.37.1	0.005236
ORF1ab/nsp15A1-B	217	A217del	GCT	---	2	2	P.1.1	0.000635
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	2	2	P.1.1	0.000635
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	2	2	P.1.10	0.000539
ORF1ab/nsp15A1-B	217	A217D	gCt	gAt	2	2	R.1	0.00018
ORF1ab/nsp15A1-B	217	A217del	GCT	---	1	1	A.2.4	0.003367
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	AD.2	0.000219
ORF1ab/nsp15A1-B	217	A217E	gCT	gAA	1	1	All	0
ORF1ab/nsp15A1-B	217	A217I	GCt	ATt	1	1	All	0
ORF1ab/nsp15A1-B	217	A217F	GCt	TTt	1	1	All	0
ORF1ab/nsp15A1-B	217	A217C	GCT	TGC	1	1	All	0
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	1	1	AY.10	0.00053
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	AY.100	0.000046
ORF1ab/nsp15A1-B	217	A217A	gcT	gcA	1	1	AY.102	0.000027
ORF1ab/nsp15A1-B	217	A217G	gCt	gGt	1	1	AY.102	0.000027
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	1	1	AY.103	0.000006
ORF1ab/nsp15A1-B	217	A217del	GCT	---	1	1	AY.103	0.000006
ORF1ab/nsp15A1-B	217	A217G	gCt	gGt	1	1	AY.103	0.000006
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	AY.114	0.000231
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	AY.116	0.000287
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	AY.117	0.000085
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	AY.119	0.000035
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	AY.12	0.000316
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	1	1	AY.120	0.000037
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	AY.120.1	0.000321
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	1	1	AY.120.1	0.000321
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	1	1	AY.121	0.000135
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	AY.16	0.00038
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	AY.19	0.00114
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	AY.20	0.000039
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	1	1	AY.23	0.00007
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	1	1	AY.26	0.000028
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	1	1	AY.26	0.000028
ORF1ab/nsp15A1-B	217	A217del	GCT	---	1	1	AY.29	0.000016
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	AY.32	0.000532
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	1	1	AY.34	0.000097
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	AY.34	0.000097
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	AY.34.1	0.00051
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	1	1	AY.36	0.000148
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	1	1	AY.36	0.000148
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	AY.39.1	0.00004
ORF1ab/nsp15A1-B	217	A217D	gCt	gAt	1	1	AY.4	0.000002
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	AY.4.5	0.000107
ORF1ab/nsp15A1-B	217	A217A	gcT	gcA	1	1	AY.42	0.00004
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	AY.42	0.00004
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	217	A217A	gcT	gcA	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	217	A217del1	GcT	Ac-	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	AY.45	0.000122
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	AY.46.5	0.000198
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	AY.5.3	0.000337
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	AY.52	0.000814
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	1	1	AY.54	0.000095
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	AY.55	0.000917
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	AY.58	0.000907
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	AY.58	0.000907
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	1	1	AY.59	0.00053
ORF1ab/nsp15A1-B	217	A217P	GcT	CcA	1	1	AY.59	0.00053
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	AY.6	0.000041
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	AY.62	0.000436
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	1	1	AY.66	0.00107
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	AY.67	0.000464
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	AY.69	0.000187
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	AY.7	0.000196
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	1	1	AY.7.1	0.000113
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	AY.7.1	0.000113
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	AY.77	0.001127
ORF1ab/nsp15A1-B	217	A217del	GCT	---	1	1	AY.78	0.001541
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	AY.79	0.001211
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	AY.85	0.000427
ORF1ab/nsp15A1-B	217	A217del	GCT	---	1	1	AY.85	0.000427
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	AY.9.1	0.000084
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	AY.92	0.000287
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	AY.95	0.000761
ORF1ab/nsp15A1-B	217	A217del	GCT	---	1	1	AY.98	0.000079
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	AY.98	0.000079
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	AY.98.1	0.000048
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	AY.99.2	0.000092
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	B	0.000128
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	217	A217del	GCT	---	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	217	A217G	gCt	gGt	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	217	A217del	GCT	---	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	B.1.1.10	0.001115
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	1	1	B.1.1.214	0.000055
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	1	1	B.1.1.28	0.000311
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	B.1.1.306	0.000438
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	B.1.1.306	0.000438
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	1	1	B.1.1.317	0.000412
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	B.1.1.37	0.000193
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	B.1.1.386	0.066667
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	1	1	B.1.1.485	0.016667
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	1	1	B.1.1.519	0.00004
ORF1ab/nsp15A1-B	217	A217A	gcT	gcA	1	1	B.1.1.63	0.000386
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	B.1.1.63	0.000386
ORF1ab/nsp15A1-B	217	A217del	GCT	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	B.1.110.3	0.000718
ORF1ab/nsp15A1-B	217	A217P	Gct	Cct	1	1	B.1.160	0.000031
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	1	1	B.1.160.16	0.000929
ORF1ab/nsp15A1-B	217	A217D	gCt	gAt	1	1	B.1.160.16	0.000929
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	B.1.160.31	0.008065
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	B.1.160.33	0.004425
ORF1ab/nsp15A1-B	217	A217del1	gcT	gc-	1	1	B.1.177	0.000013
ORF1ab/nsp15A1-B	217	A217G	gCt	gGt	1	1	B.1.177	0.000013
ORF1ab/nsp15A1-B	217	A217del	GCT	---	1	1	B.1.177.16	0.000664
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	B.1.177.28	0.007407
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	B.1.177.36	0.016129
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	B.1.177.60	0.000218
ORF1ab/nsp15A1-B	217	A217del	GCT	---	1	1	B.1.177.68	0.015152
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	B.1.177.77	0.000726
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	B.1.177.87	0.000728
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	B.1.190	0.01
ORF1ab/nsp15A1-B	217	A217P	Gct	Cct	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	217	A217F	GCt	TTt	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	217	A217del1	gcT	gc-	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	217	A217I	GCt	ATt	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	B.1.221	0.000071
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	B.1.243	0.00007
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	B.1.311	0.000275
ORF1ab/nsp15A1-B	217	A217C	GCT	TGC	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	217	A217del1	gcT	gc-	1	1	B.1.356	0.001727
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	1	1	B.1.36.1	0.00114
ORF1ab/nsp15A1-B	217	A217del	GCT	---	1	1	B.1.36.1	0.00114
ORF1ab/nsp15A1-B	217	A217del	GCT	---	1	1	B.1.36.29	0.000517
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	B.1.36.29	0.000517
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	B.1.369	0.000285
ORF1ab/nsp15A1-B	217	A217del	GCT	---	1	1	B.1.375	0.00082
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	B.1.389	0.001002
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	1	1	B.1.396	0.000706
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	B.1.416	0.001269
ORF1ab/nsp15A1-B	217	A217del	GCT	---	1	1	B.1.416.1	0.001563
ORF1ab/nsp15A1-B	217	A217A	gcT	gcA	1	1	B.1.427	0.00005
ORF1ab/nsp15A1-B	217	A217G	gCt	gGt	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	217	A217A	gcT	gcG	1	1	B.1.435	0.011364
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	B.1.438.1	0.000107
ORF1ab/nsp15A1-B	217	A217A	gcT	gcA	1	1	B.1.462	0.007246
ORF1ab/nsp15A1-B	217	A217G	gCt	gGt	1	1	B.1.462	0.007246
ORF1ab/nsp15A1-B	217	A217E	gCT	gAA	1	1	B.1.497	0.000315
ORF1ab/nsp15A1-B	217	A217P	Gct	Cct	1	1	B.1.526	0.000024
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	1	1	B.1.526	0.000024
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	B.1.560	0.00463
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	B.1.582	0.000491
ORF1ab/nsp15A1-B	217	A217del	GCT	---	1	1	B.1.585	0.027778
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	217	A217G	gCt	gGt	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	B.1.617.1	0.000129
ORF1ab/nsp15A1-B	217	A217G	gCt	gGt	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	217	A217del	GCT	---	1	1	B.1.620	0.000946
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	1	1	B.1.621	0.000089
ORF1ab/nsp15A1-B	217	A217del	GCT	---	1	1	B.1.621.1	0.000506
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	1	1	B.1.621.1	0.000506
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	1	1	B.1.631	0.003367
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	1	1	B.1.637	0.000073
ORF1ab/nsp15A1-B	217	A217A	gcT	gcG	1	1	B.1.78	0.008547
ORF1ab/nsp15A1-B	217	A217A	gcT	gcC	1	1	B.58	0.010204
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	1	1	C.36.3	0.000567
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	1	1	C.37	0.000116
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	217	A217P	Gct	Cct	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	N.9	0.005952
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	1	1	P.1	0.000016
ORF1ab/nsp15A1-B	217	A217P	Gct	Cct	1	1	P.1.1	0.000318
ORF1ab/nsp15A1-B	217	A217T	Gct	Act	1	1	P.1.10	0.000269
ORF1ab/nsp15A1-B	217	A217S	Gct	Tct	1	1	P.1.16	0.000374
ORF1ab/nsp15A1-B	217	A217V	gCt	gTt	1	1	P.1.17	0.000162
ORF1ab/nsp15A1-B	217	A217del	GCT	---	1	1	Q.2	0.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.