CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 206

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp15A1-B	206	R206S	R6658S	nonsyn	agG	agT	7684	7670	0.998178	20236-20238
ORF1ab/nsp15A1-B	206	R206S	R6658S	nonsyn	agG	agC	7684	14	0.00182197	20236-20238
ORF1ab/nsp15A1-B	206	R206M	R6658M	nonsyn	aGg	aTg	630	630	1	20236-20238
ORF1ab/nsp15A1-B	206	R206R	R6658R	syn	agG	agA	421	352	0.836105	20236-20238
ORF1ab/nsp15A1-B	206	R206R	R6658R	syn	Agg	Cgg	421	68	0.16152	20236-20238
ORF1ab/nsp15A1-B	206	R206R	R6658R	syn	AgG	CgA	421	1	0.0023753	20236-20238
ORF1ab/nsp15A1-B	206	R206K	R6658K	nonsyn	aGg	aAg	299	290	0.9699	20236-20238
ORF1ab/nsp15A1-B	206	R206K	R6658K	nonsyn	aGG	aAA	299	9	0.0301003	20236-20238
ORF1ab/nsp15A1-B	206	R206W	R6658W	nonsyn	Agg	Tgg	177	177	1	20236-20238
ORF1ab/nsp15A1-B	206	R206G	R6658G	nonsyn	Agg	Ggg	112	108	0.964286	20236-20238
ORF1ab/nsp15A1-B	206	R206G	R6658G	nonsyn	AgG	GgT	112	3	0.0267857	20236-20238
ORF1ab/nsp15A1-B	206	R206G	R6658G	nonsyn	AgG	GgA	112	1	0.00892857	20236-20238
ORF1ab/nsp15A1-B	206	R206del	R6658del	del	AGG	---	48	48	1	20236-20238
ORF1ab/nsp15A1-B	206	R206T	R6658T	nonsyn	aGg	aCg	14	13	0.928571	20236-20238
ORF1ab/nsp15A1-B	206	R206T	R6658T	nonsyn	aGG	aCC	14	1	0.0714286	20236-20238
ORF1ab/nsp15A1-B	206	R206I	R6658I	nonsyn	aGG	aTT	12	6	0.5	20236-20238
ORF1ab/nsp15A1-B	206	R206I	R6658I	nonsyn	aGG	aTA	12	6	0.5	20236-20238
ORF1ab/nsp15A1-B	206	R206X	R6658X	nonsyn	AGG	TAA	11	6	0.545455	20236-20238
ORF1ab/nsp15A1-B	206	R206X	R6658X	nonsyn	AgG	TgA	11	3	0.272727	20236-20238
ORF1ab/nsp15A1-B	206	R206X	R6658X	nonsyn	AGg	TAg	11	2	0.181818	20236-20238
ORF1ab/nsp15A1-B	206	R206del1	R6658del1	del	aGg	a-g	10	8	0.8	20236-20238
ORF1ab/nsp15A1-B	206	R206del1	R6658del1	del	agG	ag-	10	1	0.1	20236-20238
ORF1ab/nsp15A1-B	206	R206del1	R6658del1	del	Agg	-gg	10	1	0.1	20236-20238
ORF1ab/nsp15A1-B	206	R206L	R6658L	nonsyn	AGG	TTA	8	5	0.625	20236-20238
ORF1ab/nsp15A1-B	206	R206L	R6658L	nonsyn	AGg	CTg	8	1	0.125	20236-20238
ORF1ab/nsp15A1-B	206	R206L	R6658L	nonsyn	AGG	CTA	8	1	0.125	20236-20238
ORF1ab/nsp15A1-B	206	R206L	R6658L	nonsyn	AGg	TTg	8	1	0.125	20236-20238
ORF1ab/nsp15A1-B	206	R206F	R6658F	nonsyn	AGG	TTT	6	6	1	20236-20238
ORF1ab/nsp15A1-B	206	R206Y	R6658Y	nonsyn	AGG	TAT	6	6	1	20236-20238
ORF1ab/nsp15A1-B	206	R206N	R6658N	nonsyn	aGG	aAT	6	6	1	20236-20238
ORF1ab/nsp15A1-B	206	R206C	R6658C	nonsyn	AgG	TgT	3	2	0.666667	20236-20238
ORF1ab/nsp15A1-B	206	R206C	R6658C	nonsyn	AgG	TgC	3	1	0.333333	20236-20238
ORF1ab/nsp15A1-B	206	R206del2	R6658del2	del	AGg	--g	2	2	1	20236-20238
ORF1ab/nsp15A1-B	206	R206V	R6658V	nonsyn	AGG	GTT	2	1	0.5	20236-20238
ORF1ab/nsp15A1-B	206	R206V	R6658V	nonsyn	AGG	GTA	2	1	0.5	20236-20238

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp15A1-B	206	R206S	agG	agT	7670	7684	All	0.001467
ORF1ab/nsp15A1-B	206	R206S	agG	agC	14	7684	All	0.000003
ORF1ab/nsp15A1-B	206	R206S	agG	agT	5115	5115	B.1.177.21	0.391145
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	630	630	All	0.00012
ORF1ab/nsp15A1-B	206	R206R	agG	agA	352	421	All	0.000067
ORF1ab/nsp15A1-B	206	R206R	Agg	Cgg	68	421	All	0.000013
ORF1ab/nsp15A1-B	206	R206R	AgG	CgA	1	421	All	0
ORF1ab/nsp15A1-B	206	R206S	agG	agT	336	337	B.1.1.7	0.000301
ORF1ab/nsp15A1-B	206	R206S	agG	agC	1	337	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	290	299	All	0.000055
ORF1ab/nsp15A1-B	206	R206K	aGG	aAA	9	299	All	0.000002
ORF1ab/nsp15A1-B	206	R206S	agG	agT	293	293	AY.4	0.000456
ORF1ab/nsp15A1-B	206	R206S	agG	agT	276	277	B.1.617.2	0.001039
ORF1ab/nsp15A1-B	206	R206S	agG	agC	1	277	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	206	R206S	agG	agT	200	200	B.1.1.25	0.113701
ORF1ab/nsp15A1-B	206	R206S	agG	agT	199	199	D.5	0.99005
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	177	177	All	0.000034
ORF1ab/nsp15A1-B	206	R206S	agG	agT	114	114	AY.44	0.000694
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	108	112	All	0.000021
ORF1ab/nsp15A1-B	206	R206G	AgG	GgT	3	112	All	0.000001
ORF1ab/nsp15A1-B	206	R206G	AgG	GgA	1	112	All	0
ORF1ab/nsp15A1-B	206	R206R	agG	agA	107	110	B.1.1.7	0.000096
ORF1ab/nsp15A1-B	206	R206R	Agg	Cgg	2	110	B.1.1.7	0.000002
ORF1ab/nsp15A1-B	206	R206R	AgG	CgA	1	110	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	206	R206R	agG	agA	110	110	B.1.2	0.000969
ORF1ab/nsp15A1-B	206	R206S	agG	agT	105	105	AY.9.1	0.008791
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	102	102	AY.25	0.000614
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	90	90	B.1.2	0.000792
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	89	89	B.1.177	0.001172
ORF1ab/nsp15A1-B	206	R206S	agG	agT	74	74	B.1.429	0.001741
ORF1ab/nsp15A1-B	206	R206R	agG	agA	73	73	P.1	0.00115
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	65	65	AY.20	0.002526
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	65	65	B.1.1.7	0.000058
ORF1ab/nsp15A1-B	206	R206S	agG	agT	64	64	AY.103	0.000397
ORF1ab/nsp15A1-B	206	R206S	agG	agT	58	58	AY.25	0.000349
ORF1ab/nsp15A1-B	206	R206S	agG	agT	56	57	B.1	0.000513
ORF1ab/nsp15A1-B	206	R206S	agG	agC	1	57	B.1	0.000009
ORF1ab/nsp15A1-B	206	R206del	AGG	---	48	48	All	0.000009
ORF1ab/nsp15A1-B	206	R206S	agG	agT	36	40	AY.43	0.000159
ORF1ab/nsp15A1-B	206	R206S	agG	agC	4	40	AY.43	0.000018
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	38	38	B.1.1.7	0.000034
ORF1ab/nsp15A1-B	206	R206S	agG	agT	37	37	AY.6	0.001522
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	35	35	AY.4	0.000054
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	34	34	AY.4	0.000053
ORF1ab/nsp15A1-B	206	R206R	Agg	Cgg	30	33	AY.39	0.000741
ORF1ab/nsp15A1-B	206	R206R	agG	agA	3	33	AY.39	0.000074
ORF1ab/nsp15A1-B	206	R206S	agG	agT	32	32	B.1.177	0.000421
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	32	32	B.1.2	0.000282
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	32	32	C.36.1	0.13278
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	31	31	B.1	0.000284
ORF1ab/nsp15A1-B	206	R206S	agG	agT	31	31	B.1.1	0.000562
ORF1ab/nsp15A1-B	206	R206S	agG	agT	31	31	B.1.1.317	0.012762
ORF1ab/nsp15A1-B	206	R206S	agG	agT	30	30	B.1.1.311	0.010745
ORF1ab/nsp15A1-B	206	R206S	agG	agT	29	29	AY.102	0.000769
ORF1ab/nsp15A1-B	206	R206S	agG	agT	28	28	AY.29	0.000442
ORF1ab/nsp15A1-B	206	R206S	agG	agT	28	28	AY.3	0.000278
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	26	26	B.1.160.16	0.024164
ORF1ab/nsp15A1-B	206	R206S	agG	agT	26	26	B.1.36	0.003793
ORF1ab/nsp15A1-B	206	R206R	agG	agA	21	24	AY.4	0.000033
ORF1ab/nsp15A1-B	206	R206R	Agg	Cgg	3	24	AY.4	0.000005
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	21	21	AY.29	0.000331
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	21	21	B.1.1.242	0.913043
ORF1ab/nsp15A1-B	206	R206S	agG	agT	21	21	B.1.1.33	0.008838
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	20	20	AY.4	0.000031
ORF1ab/nsp15A1-B	206	R206S	agG	agT	20	20	AY.5.3	0.006748
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	20	20	B.1	0.000183
ORF1ab/nsp15A1-B	206	R206S	agG	agT	20	20	B.1.160	0.000624
ORF1ab/nsp15A1-B	206	R206R	Agg	Cgg	16	19	AY.103	0.000099
ORF1ab/nsp15A1-B	206	R206R	agG	agA	3	19	AY.103	0.000019
ORF1ab/nsp15A1-B	206	R206S	agG	agT	19	19	AY.5	0.000392
ORF1ab/nsp15A1-B	206	R206S	agG	agT	19	19	B.1.1.50	0.012899
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	13	19	B.1.1.7	0.000012
ORF1ab/nsp15A1-B	206	R206K	aGG	aAA	6	19	B.1.1.7	0.000005
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	18	18	AY.44	0.00011
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	18	18	B.1.243	0.001253
ORF1ab/nsp15A1-B	206	R206S	agG	agT	17	17	B.1.1.341	1
ORF1ab/nsp15A1-B	206	R206S	agG	agT	17	17	B.1.131	0.149123
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	17	17	B.1.617.2	0.000064
ORF1ab/nsp15A1-B	206	R206S	agG	agT	13	16	B.1.2	0.000114
ORF1ab/nsp15A1-B	206	R206S	agG	agC	3	16	B.1.2	0.000026
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	15	15	AY.103	0.000093
ORF1ab/nsp15A1-B	206	R206S	agG	agT	15	15	D.4	1
ORF1ab/nsp15A1-B	206	R206T	aGg	aCg	13	14	All	0.000002
ORF1ab/nsp15A1-B	206	R206T	aGG	aCC	1	14	All	0
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	12	14	B.1.1.7	0.000011
ORF1ab/nsp15A1-B	206	R206G	AgG	GgT	1	14	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	206	R206G	AgG	GgA	1	14	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	206	R206I	aGG	aTA	6	12	All	0.000001
ORF1ab/nsp15A1-B	206	R206I	aGG	aTT	6	12	All	0.000001
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	12	12	B.1.1.519	0.000477
ORF1ab/nsp15A1-B	206	R206I	aGG	aTT	6	12	B.1.1.7	0.000005
ORF1ab/nsp15A1-B	206	R206I	aGG	aTA	6	12	B.1.1.7	0.000005
ORF1ab/nsp15A1-B	206	R206X	AGG	TAA	6	11	All	0.000001
ORF1ab/nsp15A1-B	206	R206X	AgG	TgA	3	11	All	0.000001
ORF1ab/nsp15A1-B	206	R206X	AGg	TAg	2	11	All	0
ORF1ab/nsp15A1-B	206	R206S	agG	agT	11	11	B.1.1.369	0.004909
ORF1ab/nsp15A1-B	206	R206del1	aGg	a-g	8	10	All	0.000002
ORF1ab/nsp15A1-B	206	R206del1	agG	ag-	1	10	All	0
ORF1ab/nsp15A1-B	206	R206del1	Agg	-gg	1	10	All	0
ORF1ab/nsp15A1-B	206	R206S	agG	agT	10	10	AY.20	0.000389
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	10	10	AY.44	0.000061
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	10	10	B.1.1.461	0.120482
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	9	9	AY.103	0.000056
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	9	9	AY.26	0.000255
ORF1ab/nsp15A1-B	206	R206S	agG	agT	9	9	AY.39	0.000222
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	9	9	AY.43	0.00004
ORF1ab/nsp15A1-B	206	R206X	AGG	TAA	5	9	B.1.1.7	0.000004
ORF1ab/nsp15A1-B	206	R206X	AgG	TgA	2	9	B.1.1.7	0.000002
ORF1ab/nsp15A1-B	206	R206X	AGg	TAg	2	9	B.1.1.7	0.000002
ORF1ab/nsp15A1-B	206	R206R	agG	agA	8	9	B.1.617.2	0.00003
ORF1ab/nsp15A1-B	206	R206R	Agg	Cgg	1	9	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	9	9	D.2	0.000675
ORF1ab/nsp15A1-B	206	R206L	AGG	TTA	5	8	All	0.000001
ORF1ab/nsp15A1-B	206	R206L	AGG	CTA	1	8	All	0
ORF1ab/nsp15A1-B	206	R206L	AGg	TTg	1	8	All	0
ORF1ab/nsp15A1-B	206	R206L	AGg	CTg	1	8	All	0
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	8	8	AY.39	0.000198
ORF1ab/nsp15A1-B	206	R206S	agG	agT	8	8	AY.5.4	0.002214
ORF1ab/nsp15A1-B	206	R206L	AGG	TTA	5	8	B.1.1.7	0.000004
ORF1ab/nsp15A1-B	206	R206L	AGg	TTg	1	8	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	206	R206L	AGG	CTA	1	8	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	206	R206L	AGg	CTg	1	8	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	8	8	B.1.2	0.00007
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	7	7	AY.3	0.00007
ORF1ab/nsp15A1-B	206	R206S	agG	agT	7	7	AY.33	0.000467
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	7	7	AY.5	0.000145
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	7	7	B.1	0.000064
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	7	7	B.1.1.317	0.002882
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	7	7	B.1.1.519	0.000278
ORF1ab/nsp15A1-B	206	R206S	agG	agT	7	7	B.1.258	0.000466
ORF1ab/nsp15A1-B	206	R206S	agG	agT	7	7	B.1.36.1	0.007982
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	7	7	B.1.617.2	0.000026
ORF1ab/nsp15A1-B	206	R206F	AGG	TTT	6	6	All	0.000001
ORF1ab/nsp15A1-B	206	R206Y	AGG	TAT	6	6	All	0.000001
ORF1ab/nsp15A1-B	206	R206N	aGG	aAT	6	6	All	0.000001
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	6	6	AY.119	0.000212
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	6	6	AY.121	0.000812
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	6	6	AY.4	0.000009
ORF1ab/nsp15A1-B	206	R206S	agG	agT	6	6	AY.75	0.000336
ORF1ab/nsp15A1-B	206	R206S	agG	agT	6	6	AY.98	0.000474
ORF1ab/nsp15A1-B	206	R206R	Agg	Cgg	6	6	B.1	0.000055
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	5	6	B.1.1	0.000091
ORF1ab/nsp15A1-B	206	R206K	aGG	aAA	1	6	B.1.1	0.000018
ORF1ab/nsp15A1-B	206	R206S	agG	agT	6	6	B.1.1.519	0.000238
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	6	6	B.1.1.519	0.000238
ORF1ab/nsp15A1-B	206	R206F	AGG	TTT	6	6	B.1.1.7	0.000005
ORF1ab/nsp15A1-B	206	R206del	AGG	---	6	6	B.1.1.7	0.000005
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	6	6	B.1.617.2	0.000023
ORF1ab/nsp15A1-B	206	R206R	Agg	Cgg	4	6	Q.3	0.00058
ORF1ab/nsp15A1-B	206	R206R	agG	agA	2	6	Q.3	0.00029
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	5	5	AE.8	0.002445
ORF1ab/nsp15A1-B	206	R206S	agG	agT	5	5	AY.119	0.000177
ORF1ab/nsp15A1-B	206	R206S	agG	agT	4	5	AY.4.2	0.000087
ORF1ab/nsp15A1-B	206	R206S	agG	agC	1	5	AY.4.2	0.000022
ORF1ab/nsp15A1-B	206	R206S	agG	agT	5	5	AY.45	0.000608
ORF1ab/nsp15A1-B	206	R206S	agG	agT	5	5	AY.47	0.000156
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	5	5	B.1	0.000046
ORF1ab/nsp15A1-B	206	R206S	agG	agT	5	5	B.1.1.222	0.00102
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	5	5	B.1.1.222	0.00102
ORF1ab/nsp15A1-B	206	R206N	aGG	aAT	5	5	B.1.1.7	0.000004
ORF1ab/nsp15A1-B	206	R206Y	AGG	TAT	5	5	B.1.1.7	0.000004
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	5	5	B.1.234	0.00066
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	5	5	B.1.617.2	0.000019
ORF1ab/nsp15A1-B	206	R206S	agG	agT	5	5	C.37	0.00058
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	5	5	P.1	0.000079
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	5	5	P.1.1	0.001588
ORF1ab/nsp15A1-B	206	R206S	agG	agT	5	5	Q.3	0.000725
ORF1ab/nsp15A1-B	206	R206del	AGG	---	4	4		0.222222
ORF1ab/nsp15A1-B	206	R206S	agG	agT	4	4	A.23.1	0.002817
ORF1ab/nsp15A1-B	206	R206K	aGG	aAA	2	4	AY.3.1	0.000171
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	2	4	AY.3.1	0.000171
ORF1ab/nsp15A1-B	206	R206del	AGG	---	4	4	AY.4	0.000006
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	4	4	AY.43	0.000018
ORF1ab/nsp15A1-B	206	R206S	agG	agT	4	4	AY.46.5	0.000794
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	4	4	AY.6	0.000165
ORF1ab/nsp15A1-B	206	R206S	agG	agT	4	4	AY.99.2	0.000369
ORF1ab/nsp15A1-B	206	R206del	AGG	---	4	4	B.1.2	0.000035
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	4	4	B.1.210	0.008529
ORF1ab/nsp15A1-B	206	R206S	agG	agT	4	4	B.1.243	0.000278
ORF1ab/nsp15A1-B	206	R206S	agG	agT	4	4	B.1.427	0.000202
ORF1ab/nsp15A1-B	206	R206S	agG	agT	4	4	B.1.621	0.000354
ORF1ab/nsp15A1-B	206	R206S	agG	agT	4	4	P.2	0.000747
ORF1ab/nsp15A1-B	206	R206S	agG	agT	3	3	A.2.5	0.001497
ORF1ab/nsp15A1-B	206	R206C	AgG	TgT	2	3	All	0
ORF1ab/nsp15A1-B	206	R206C	AgG	TgC	1	3	All	0
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	3	3	AY.116	0.00086
ORF1ab/nsp15A1-B	206	R206S	agG	agT	3	3	AY.120.1	0.000963
ORF1ab/nsp15A1-B	206	R206S	agG	agT	3	3	AY.23	0.000209
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	3	3	AY.29	0.000047
ORF1ab/nsp15A1-B	206	R206S	agG	agT	3	3	AY.30	0.001187
ORF1ab/nsp15A1-B	206	R206S	agG	agT	3	3	AY.42	0.000121
ORF1ab/nsp15A1-B	206	R206del	AGG	---	3	3	AY.43	0.000013
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	3	3	AY.47	0.000093
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	3	3	AY.5	0.000062
ORF1ab/nsp15A1-B	206	R206S	agG	agT	3	3	AY.7.1	0.000338
ORF1ab/nsp15A1-B	206	R206S	agG	agT	3	3	AY.74	0.000347
ORF1ab/nsp15A1-B	206	R206S	agG	agT	3	3	AY.77	0.003382
ORF1ab/nsp15A1-B	206	R206S	agG	agT	3	3	AY.85	0.001282
ORF1ab/nsp15A1-B	206	R206S	agG	agT	3	3	AY.9.2	0.00011
ORF1ab/nsp15A1-B	206	R206S	agG	agT	3	3	AY.99	0.003148
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	3	3	B.1.1	0.000054
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	3	3	B.1.1.306	0.001315
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	3	3	B.1.1.377	0.004144
ORF1ab/nsp15A1-B	206	R206S	agG	agT	3	3	B.1.1.521	0.016043
ORF1ab/nsp15A1-B	206	R206del1	aGg	a-g	2	3	B.1.1.7	0.000002
ORF1ab/nsp15A1-B	206	R206del1	Agg	-gg	1	3	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	206	R206S	agG	agT	3	3	B.1.177.86	0.00055
ORF1ab/nsp15A1-B	206	R206S	agG	agT	3	3	B.1.351	0.000089
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	3	3	B.1.396	0.002117
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	3	3	B.1.429	0.000071
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	3	3	B.1.576	0.00272
ORF1ab/nsp15A1-B	206	R206S	agG	agT	3	3	C.36	0.002732
ORF1ab/nsp15A1-B	206	R206R	agG	agA	3	3	N.5	0.0053
ORF1ab/nsp15A1-B	206	R206S	agG	agT	3	3	P.1	0.000047
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	A.2.2	0.003378
ORF1ab/nsp15A1-B	206	R206del2	AGg	--g	2	2	All	0
ORF1ab/nsp15A1-B	206	R206V	AGG	GTA	1	2	All	0
ORF1ab/nsp15A1-B	206	R206V	AGG	GTT	1	2	All	0
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	2	2	AY.100	0.000092
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	2	2	AY.100	0.000092
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	AY.100	0.000092
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	2	2	AY.102	0.000053
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	AY.106	0.00067
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	AY.107	0.000932
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	AY.108	0.002205
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	AY.109	0.001479
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	AY.111	0.000366
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	AY.116.1	0.000623
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	2	2	AY.117	0.000169
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	AY.118	0.000125
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	AY.120	0.000074
ORF1ab/nsp15A1-B	206	R206R	agG	agA	2	2	AY.25	0.000012
ORF1ab/nsp15A1-B	206	R206T	aGg	aCg	2	2	AY.26	0.000057
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	AY.26	0.000057
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	AY.3.1	0.000171
ORF1ab/nsp15A1-B	206	R206R	agG	agA	2	2	AY.3.1	0.000171
ORF1ab/nsp15A1-B	206	R206G	AgG	GgT	2	2	AY.33	0.000134
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	AY.36	0.000296
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	2	2	AY.39	0.000049
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	AY.4.2.1	0.000298
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	AY.4.4	0.000818
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	AY.4.5	0.000215
ORF1ab/nsp15A1-B	206	R206del1	aGg	a-g	2	2	AY.44	0.000012
ORF1ab/nsp15A1-B	206	R206R	agG	agA	2	2	AY.44	0.000012
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	AY.46	0.000208
ORF1ab/nsp15A1-B	206	R206R	Agg	Cgg	2	2	AY.5	0.000041
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	AY.5.1	0.007519
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	2	2	AY.54	0.000191
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	AY.54	0.000191
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	AY.75.1	0.000361
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	2	2	AY.75.1	0.000361
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	2	2	AY.89	0.009804
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	2	2	AY.91	0.001461
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	2	2	AY.98.1	0.000097
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	AY.98.1	0.000097
ORF1ab/nsp15A1-B	206	R206del	AGG	---	2	2	B.1	0.000018
ORF1ab/nsp15A1-B	206	R206X	AgG	TgA	1	2	B.1.1	0.000018
ORF1ab/nsp15A1-B	206	R206X	AGG	TAA	1	2	B.1.1	0.000018
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	2	2	B.1.1.148	0.017544
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	2	2	B.1.1.318	0.000604
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	B.1.1.409	0.005666
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	2	2	B.1.1.462	0.017241
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	B.1.1.63	0.000772
ORF1ab/nsp15A1-B	206	R206T	aGg	aCg	2	2	B.1.1.7	0.000002
ORF1ab/nsp15A1-B	206	R206V	AGG	GTA	1	2	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	206	R206V	AGG	GTT	1	2	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	2	2	B.1.110.3	0.001437
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	2	2	B.1.177	0.000026
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	B.1.177.32	0.002699
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	B.1.177.73	0.001133
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	B.1.190	0.02
ORF1ab/nsp15A1-B	206	R206R	agG	agA	2	2	B.1.221	0.000142
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	2	2	B.1.243	0.000139
ORF1ab/nsp15A1-B	206	R206del	AGG	---	2	2	B.1.258	0.000133
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	2	2	B.1.258.17	0.000208
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	2	2	B.1.349	0.00143
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	2	2	B.1.362	0.003082
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	2	2	B.1.429	0.000047
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	2	2	B.1.596	0.000174
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	2	2	B.1.596	0.000174
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	2	2	B.1.617.1	0.000258
ORF1ab/nsp15A1-B	206	R206del	AGG	---	2	2	B.1.617.2	0.000008
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	B.4	0.004415
ORF1ab/nsp15A1-B	206	R206S	agG	agC	2	2	B.40	0.000729
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	2	2	C.36	0.001821
ORF1ab/nsp15A1-B	206	R206R	agG	agA	2	2	C.37	0.000232
ORF1ab/nsp15A1-B	206	R206T	aGg	aCg	2	2	D.2	0.00015
ORF1ab/nsp15A1-B	206	R206S	agG	agT	2	2	D.2	0.00015
ORF1ab/nsp15A1-B	206	R206del1	aGg	a-g	2	2	P.1	0.000032
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	2	2	P.1.14	0.000096
ORF1ab/nsp15A1-B	206	R206R	agG	agA	2	2	P.1.14	0.000096
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	A	0.000387
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	A	0.000387
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	A.1	0.000282
ORF1ab/nsp15A1-B	206	R206del	AGG	---	1	1	A.2.4	0.003367
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	A.2.5.2	0.001572
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	A.3	0.002096
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AD.1	0.004115
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AE.8	0.000489
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AU.2	0.002421
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	AY.100	0.000046
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.101	0.00049
ORF1ab/nsp15A1-B	206	R206T	aGg	aCg	1	1	AY.102	0.000027
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.110	0.000113
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	AY.111	0.000183
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	AY.117	0.000085
ORF1ab/nsp15A1-B	206	R206R	Agg	Cgg	1	1	AY.117	0.000085
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	AY.118	0.000063
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	AY.119	0.000035
ORF1ab/nsp15A1-B	206	R206del	AGG	---	1	1	AY.120.1	0.000321
ORF1ab/nsp15A1-B	206	R206R	agG	agA	1	1	AY.120.2	0.001285
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.120.2.1	0.000498
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.13	0.000161
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.19	0.00114
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	1	1	AY.20	0.000039
ORF1ab/nsp15A1-B	206	R206R	agG	agA	1	1	AY.23	0.00007
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	206	R206del	AGG	---	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.27	0.000065
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.28	0.00189
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	1	1	AY.29	0.000016
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	AY.29	0.000016
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	1	1	AY.3	0.00001
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	AY.3	0.00001
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	1	1	AY.3	0.00001
ORF1ab/nsp15A1-B	206	R206T	aGg	aCg	1	1	AY.3.1	0.000085
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	AY.3.1	0.000085
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	1	1	AY.30	0.000396
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.32	0.000532
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	1	1	AY.32	0.000532
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	AY.33	0.000067
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	1	1	AY.33	0.000067
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	AY.34	0.000097
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.34.1	0.00051
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	AY.36	0.000148
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	AY.37	0.000316
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.38	0.000499
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	AY.39	0.000025
ORF1ab/nsp15A1-B	206	R206del1	agG	ag-	1	1	AY.4	0.000002
ORF1ab/nsp15A1-B	206	R206del2	AGg	--g	1	1	AY.4	0.000002
ORF1ab/nsp15A1-B	206	R206T	aGg	aCg	1	1	AY.4	0.000002
ORF1ab/nsp15A1-B	206	R206T	aGg	aCg	1	1	AY.4.2	0.000022
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	AY.41	0.000294
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	1	1	AY.42	0.00004
ORF1ab/nsp15A1-B	206	R206del2	AGg	--g	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	206	R206del	AGG	---	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	AY.45	0.000122
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	AY.45	0.000122
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	AY.46	0.000104
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	AY.46.1	0.001027
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.46.4	0.000165
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	AY.46.4	0.000165
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.5.2	0.002463
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	1	1	AY.5.3	0.000337
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.52	0.000814
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.55	0.000917
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.57	0.000656
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.58	0.000907
ORF1ab/nsp15A1-B	206	R206del	AGG	---	1	1	AY.59	0.00053
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	AY.60	0.000938
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	AY.61	0.000105
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.61	0.000105
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.62	0.000436
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.63	0.000387
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.65	0.000533
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	1	1	AY.67	0.000464
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.68	0.000274
ORF1ab/nsp15A1-B	206	R206R	agG	agA	1	1	AY.69	0.000187
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.7	0.000196
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.70	0.000209
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	AY.73	0.000665
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.79	0.001211
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	AY.82	0.001357
ORF1ab/nsp15A1-B	206	R206R	agG	agA	1	1	AY.84	0.000437
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	AY.84	0.000437
ORF1ab/nsp15A1-B	206	R206del	AGG	---	1	1	AY.85	0.000427
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.86	0.00083
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	AY.9.2	0.000037
ORF1ab/nsp15A1-B	206	R206del	AGG	---	1	1	AY.9.2	0.000037
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	AY.92	0.000287
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	AY.92	0.000287
ORF1ab/nsp15A1-B	206	R206del	AGG	---	1	1	AY.98.1	0.000048
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	AY.98.1	0.000048
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	AY.99.1	0.001553
ORF1ab/nsp15A1-B	206	R206R	agG	agA	1	1	B	0.000128
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B	0.000128
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	206	R206R	agG	agA	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	206	R206N	aGG	aAT	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	206	R206Y	AGG	TAT	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	206	R206C	AgG	TgT	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.1.1	0.000327
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.1.1.118	0.010204
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.1.1.144	0.028571
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	1	1	B.1.1.176	0.000439
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.1.1.181	0.004545
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.1.189	0.001513
ORF1ab/nsp15A1-B	206	R206T	aGG	aCC	1	1	B.1.1.214	0.000055
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	1	1	B.1.1.216	0.00089
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	1	1	B.1.1.216	0.00089
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.1.229	0.005747
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.1.269	0.001353
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.1.279	0.001121
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.1.28	0.000311
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	1	1	B.1.1.28	0.000311
ORF1ab/nsp15A1-B	206	R206R	agG	agA	1	1	B.1.1.284	0.000107
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.1.294	0.001266
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.1.1.306	0.000438
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.1.315	0.008475
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	B.1.1.33	0.000421
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.1.380	0.009804
ORF1ab/nsp15A1-B	206	R206R	agG	agA	1	1	B.1.1.433	0.001425
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	B.1.1.523	0.001563
ORF1ab/nsp15A1-B	206	R206C	AgG	TgT	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	206	R206del	AGG	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.1.103	0.019231
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.1.118	0.006711
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.1.160	0.000031
ORF1ab/nsp15A1-B	206	R206del	AGG	---	1	1	B.1.177.16	0.000664
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	1	1	B.1.177.32	0.00135
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.177.35	0.000691
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.177.57	0.000281
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.177.6	0.000977
ORF1ab/nsp15A1-B	206	R206del	AGG	---	1	1	B.1.177.62	0.001192
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	1	1	B.1.177.65	0.000665
ORF1ab/nsp15A1-B	206	R206del	AGG	---	1	1	B.1.177.68	0.015152
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.177.72	0.00339
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	1	1	B.1.177.77	0.000726
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.1.177.86	0.000183
ORF1ab/nsp15A1-B	206	R206del	AGG	---	1	1	B.1.177.9	0.001332
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.201	0.005682
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.1.214.2	0.0006
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	1	1	B.1.221	0.000071
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.1.221	0.000071
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.221	0.000071
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	1	1	B.1.221.3	0.000833
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.1.232	0.000537
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.1.234	0.000132
ORF1ab/nsp15A1-B	206	R206T	aGg	aCg	1	1	B.1.236	0.002053
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	1	1	B.1.239	0.001221
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.240	0.000216
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	1	1	B.1.243	0.00007
ORF1ab/nsp15A1-B	206	R206T	aGg	aCg	1	1	B.1.243	0.00007
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.1.258	0.000067
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	1	1	B.1.258	0.000067
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.298	0.002114
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.1.301	0.005917
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.324	0.001605
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.1.336	0.002439
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	206	R206R	agG	agA	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.36.10	0.004785
ORF1ab/nsp15A1-B	206	R206del	AGG	---	1	1	B.1.36.29	0.000517
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	1	1	B.1.36.29	0.000517
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.1.36.39	0.002217
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	B.1.36.8	0.001
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.36.8	0.001
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.1.361	0.001289
ORF1ab/nsp15A1-B	206	R206del	AGG	---	1	1	B.1.375	0.00082
ORF1ab/nsp15A1-B	206	R206del1	aGg	a-g	1	1	B.1.377	0.004566
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	B.1.398	0.002976
ORF1ab/nsp15A1-B	206	R206del	AGG	---	1	1	B.1.416.1	0.001563
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	B.1.427	0.00005
ORF1ab/nsp15A1-B	206	R206del	AGG	---	1	1	B.1.427	0.00005
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.1.428	0.00102
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	B.1.438.1	0.000107
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.439	0.005917
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.448	0.002625
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	1	1	B.1.459	0.004082
ORF1ab/nsp15A1-B	206	R206S	agG	agC	1	1	B.1.466.2	0.000391
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	1	1	B.1.470	0.001404
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.1.525	0.000113
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.526	0.000024
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.544	0.006024
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	B.1.545	0.014493
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.1.546	0.003704
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.1.551	0.00129
ORF1ab/nsp15A1-B	206	R206R	agG	agA	1	1	B.1.558	0.004566
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.573	0.006098
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.575	0.000303
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	B.1.577	0.000687
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	B.1.585	0.027778
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.599	0.00365
ORF1ab/nsp15A1-B	206	R206R	Agg	Cgg	1	1	B.1.617.1	0.000129
ORF1ab/nsp15A1-B	206	R206T	aGg	aCg	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	206	R206C	AgG	TgC	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.619.1	0.000641
ORF1ab/nsp15A1-B	206	R206del	AGG	---	1	1	B.1.620	0.000946
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	B.1.621	0.000089
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	1	1	B.1.621	0.000089
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.627	0.00202
ORF1ab/nsp15A1-B	206	R206R	Agg	Cgg	1	1	B.1.637	0.000073
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.91	0.002075
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.1.93	0.000934
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	B.28	0.003279
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.3.1	0.001658
ORF1ab/nsp15A1-B	206	R206del	AGG	---	1	1	B.34	0.013699
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.55	0.00295
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	B.6	0.00091
ORF1ab/nsp15A1-B	206	R206W	Agg	Tgg	1	1	C.1	0.002392
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	P.1.1	0.000318
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	P.1.14	0.000048
ORF1ab/nsp15A1-B	206	R206K	aGg	aAg	1	1	P.1.14	0.000048
ORF1ab/nsp15A1-B	206	R206del	AGG	---	1	1	P.1.15	0.000232
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	P.1.16	0.000374
ORF1ab/nsp15A1-B	206	R206R	Agg	Cgg	1	1	P.1.7	0.000319
ORF1ab/nsp15A1-B	206	R206del1	aGg	a-g	1	1	Q.1	0.000126
ORF1ab/nsp15A1-B	206	R206del	AGG	---	1	1	Q.2	0.000613
ORF1ab/nsp15A1-B	206	R206M	aGg	aTg	1	1	Q.3	0.000145
ORF1ab/nsp15A1-B	206	R206S	agG	agT	1	1	R.1	0.00009
ORF1ab/nsp15A1-B	206	R206G	Agg	Ggg	1	1	Y.1	0.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.