CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 196

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B196Q196HQ6648HnonsyncaGcaT118011730.99406820206-20208
ORF1ab/nsp15A1-B196Q196HQ6648HnonsyncaGcaC118070.005932220206-20208
ORF1ab/nsp15A1-B196Q196QQ6648QsyncaGcaA105105120206-20208
ORF1ab/nsp15A1-B196Q196LQ6648LnonsyncAgcTg91900.98901120206-20208
ORF1ab/nsp15A1-B196Q196LQ6648LnonsyncAGcTT9110.01098920206-20208
ORF1ab/nsp15A1-B196Q196RQ6648RnonsyncAgcGg6565120206-20208
ORF1ab/nsp15A1-B196Q196XQ6648XnonsynCagTag6161120206-20208
ORF1ab/nsp15A1-B196Q196EQ6648EnonsynCagGag3232120206-20208
ORF1ab/nsp15A1-B196Q196delQ6648deldelCAG---2525120206-20208
ORF1ab/nsp15A1-B196Q196del1Q6648del1delcaGca-18170.94444420206-20208
ORF1ab/nsp15A1-B196Q196del1Q6648del1delCag-ag1810.055555620206-20208
ORF1ab/nsp15A1-B196Q196KQ6648KnonsynCagAag1212120206-20208
ORF1ab/nsp15A1-B196Q196PQ6648PnonsyncAgcCg540.820206-20208
ORF1ab/nsp15A1-B196Q196PQ6648PnonsyncAGcCA510.220206-20208
ORF1ab/nsp15A1-B196Q196del2Q6648del2delcAGc--320.66666720206-20208
ORF1ab/nsp15A1-B196Q196del2Q6648del2delCAg--g310.33333320206-20208
ORF1ab/nsp15A1-B196Q196SQ6648SnonsynCAgTCg210.520206-20208
ORF1ab/nsp15A1-B196Q196SQ6648SnonsynCAGTCA210.520206-20208
ORF1ab/nsp15A1-B196Q196GQ6648GnonsynCAgGGg11120206-20208
ORF1ab/nsp15A1-B196Q196NQ6648NnonsynCaGAaT11120206-20208

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B196Q196HcaGcaT11731180All0.000224
ORF1ab/nsp15A1-B196Q196HcaGcaC71180All0.000001
ORF1ab/nsp15A1-B196Q196HcaGcaT336336B.1.1.70.000301
ORF1ab/nsp15A1-B196Q196QcaGcaA105105All0.00002
ORF1ab/nsp15A1-B196Q196HcaGcaT105105AY.330.007012
ORF1ab/nsp15A1-B196Q196LcAgcTg9091All0.000017
ORF1ab/nsp15A1-B196Q196LcAGcTT191All0
ORF1ab/nsp15A1-B196Q196HcaGcaT8485AY.40.000131
ORF1ab/nsp15A1-B196Q196HcaGcaC185AY.40.000002
ORF1ab/nsp15A1-B196Q196HcaGcaT7878B.1.1.4610.939759
ORF1ab/nsp15A1-B196Q196RcAgcGg6565All0.000012
ORF1ab/nsp15A1-B196Q196XCagTag6161All0.000012
ORF1ab/nsp15A1-B196Q196QcaGcaA6060AY.40.000093
ORF1ab/nsp15A1-B196Q196HcaGcaT5050B.1.20.00044
ORF1ab/nsp15A1-B196Q196HcaGcaT3638B.1.617.20.000136
ORF1ab/nsp15A1-B196Q196HcaGcaC238B.1.617.20.000008
ORF1ab/nsp15A1-B196Q196HcaGcaT3737AY.440.000225
ORF1ab/nsp15A1-B196Q196HcaGcaT3737B.1.1600.001154
ORF1ab/nsp15A1-B196Q196ECagGag3232All0.000006
ORF1ab/nsp15A1-B196Q196HcaGcaT3232B.1.1.5190.001271
ORF1ab/nsp15A1-B196Q196HcaGcaT3030R.10.0027
ORF1ab/nsp15A1-B196Q196LcAgcTg2829B.1.1.70.000025
ORF1ab/nsp15A1-B196Q196LcAGcTT129B.1.1.70.000001
ORF1ab/nsp15A1-B196Q196HcaGcaT2626AY.1030.000161
ORF1ab/nsp15A1-B196Q196delCAG---2525All0.000005
ORF1ab/nsp15A1-B196Q196XCagTag2424B.1.1.70.000021
ORF1ab/nsp15A1-B196Q196HcaGcaT2323AY.420.000925
ORF1ab/nsp15A1-B196Q196HcaGcaT2323B.1.1.2220.004692
ORF1ab/nsp15A1-B196Q196HcaGcaT2121B.1.6210.001859
ORF1ab/nsp15A1-B196Q196del1caGca-1718All0.000003
ORF1ab/nsp15A1-B196Q196del1Cag-ag118All0
ORF1ab/nsp15A1-B196Q196HcaGcaT1515B.10.000137
ORF1ab/nsp15A1-B196Q196LcAgcTg1515B.1.1600.000468
ORF1ab/nsp15A1-B196Q196HcaGcaT1414AY.950.010654
ORF1ab/nsp15A1-B196Q196HcaGcaT1213B.1.10.000218
ORF1ab/nsp15A1-B196Q196HcaGcaC113B.1.10.000018
ORF1ab/nsp15A1-B196Q196KCagAag1212All0.000002
ORF1ab/nsp15A1-B196Q196HcaGcaT1212AY.430.000053
ORF1ab/nsp15A1-B196Q196HcaGcaT1212Q.80.001979
ORF1ab/nsp15A1-B196Q196LcAgcTg1111AY.1180.000689
ORF1ab/nsp15A1-B196Q196RcAgcGg1111B.1.617.20.000041
ORF1ab/nsp15A1-B196Q196HcaGcaT1010A.23.10.007042
ORF1ab/nsp15A1-B196Q196RcAgcGg1010AY.9.20.000367
ORF1ab/nsp15A1-B196Q196QcaGcaA88B.1.1.3180.002414
ORF1ab/nsp15A1-B196Q196RcAgcGg77AY.40.000011
ORF1ab/nsp15A1-B196Q196LcAgcTg77Q.10.000884
ORF1ab/nsp15A1-B196Q196HcaGcaT66AY.250.000036
ORF1ab/nsp15A1-B196Q196LcAgcTg66AY.250.000036
ORF1ab/nsp15A1-B196Q196HcaGcaT66AY.260.00017
ORF1ab/nsp15A1-B196Q196ECagGag66AY.390.000148
ORF1ab/nsp15A1-B196Q196LcAgcTg66AY.40.000009
ORF1ab/nsp15A1-B196Q196QcaGcaA66B.1.1.70.000005
ORF1ab/nsp15A1-B196Q196del1caGca-66B.1.20.000053
ORF1ab/nsp15A1-B196Q196ECagGag66B.1.20.000053
ORF1ab/nsp15A1-B196Q196HcaGcaT66B.1.4800.014925
ORF1ab/nsp15A1-B196Q196HcaGcaT66P.10.000095
ORF1ab/nsp15A1-B196Q196PcAgcCg45All0.000001
ORF1ab/nsp15A1-B196Q196PcAGcCA15All0
ORF1ab/nsp15A1-B196Q196RcAgcGg55AY.1030.000031
ORF1ab/nsp15A1-B196Q196HcaGcaT55AY.1200.000186
ORF1ab/nsp15A1-B196Q196HcaGcaT55AY.390.000124
ORF1ab/nsp15A1-B196Q196QcaGcaA55AY.430.000022
ORF1ab/nsp15A1-B196Q196HcaGcaT55AY.610.000524
ORF1ab/nsp15A1-B196Q196QcaGcaA55B.1.617.20.000019
ORF1ab/nsp15A1-B196Q196XCagTag55D.20.000375
ORF1ab/nsp15A1-B196Q196delCAG---440.222222
ORF1ab/nsp15A1-B196Q196HcaGcaT44AY.1000.000184
ORF1ab/nsp15A1-B196Q196del1caGca-44AY.440.000024
ORF1ab/nsp15A1-B196Q196HcaGcaT44AY.450.000487
ORF1ab/nsp15A1-B196Q196HcaGcaT44AY.720.005442
ORF1ab/nsp15A1-B196Q196HcaGcaT44B.1.1.3890.024242
ORF1ab/nsp15A1-B196Q196ECagGag44B.1.617.20.000015
ORF1ab/nsp15A1-B196Q196del2cAGc--23All0
ORF1ab/nsp15A1-B196Q196del2CAg--g13All0
ORF1ab/nsp15A1-B196Q196HcaGcaT23AY.290.000032
ORF1ab/nsp15A1-B196Q196HcaGcaC13AY.290.000016
ORF1ab/nsp15A1-B196Q196HcaGcaT33AY.30.00003
ORF1ab/nsp15A1-B196Q196ECagGag33AY.440.000018
ORF1ab/nsp15A1-B196Q196QcaGcaA33AY.440.000018
ORF1ab/nsp15A1-B196Q196RcAgcGg33AY.460.000312
ORF1ab/nsp15A1-B196Q196HcaGcaT33AY.50.000062
ORF1ab/nsp15A1-B196Q196HcaGcaT33AY.60.000123
ORF1ab/nsp15A1-B196Q196RcAgcGg33AY.610.000314
ORF1ab/nsp15A1-B196Q196HcaGcaT33AY.98.10.000145
ORF1ab/nsp15A1-B196Q196HcaGcaT33AY.99.20.000276
ORF1ab/nsp15A1-B196Q196KCagAag33B.10.000027
ORF1ab/nsp15A1-B196Q196ECagGag33B.1.1.280.000934
ORF1ab/nsp15A1-B196Q196QcaGcaA33B.1.1.4340.001046
ORF1ab/nsp15A1-B196Q196ECagGag33B.1.1.5190.000119
ORF1ab/nsp15A1-B196Q196HcaGcaT33B.1.177.150.001893
ORF1ab/nsp15A1-B196Q196HcaGcaT33B.1.1920.027778
ORF1ab/nsp15A1-B196Q196delCAG---33B.1.20.000026
ORF1ab/nsp15A1-B196Q196LcAgcTg33B.1.20.000026
ORF1ab/nsp15A1-B196Q196XCagTag33B.1.20.000026
ORF1ab/nsp15A1-B196Q196HcaGcaT33B.1.360.000438
ORF1ab/nsp15A1-B196Q196HcaGcaT33B.1.36.100.014354
ORF1ab/nsp15A1-B196Q196HcaGcaT33B.1.36.290.001552
ORF1ab/nsp15A1-B196Q196HcaGcaT33B.1.3690.000856
ORF1ab/nsp15A1-B196Q196XCagTag33B.1.5260.000071
ORF1ab/nsp15A1-B196Q196HcaGcaT33B.1.5960.000261
ORF1ab/nsp15A1-B196Q196HcaGcaT23D.20.00015
ORF1ab/nsp15A1-B196Q196HcaGcaC13D.20.000075
ORF1ab/nsp15A1-B196Q196HcaGcaT33P.1.170.000485
ORF1ab/nsp15A1-B196Q196HcaGcaT33P.20.00056
ORF1ab/nsp15A1-B196Q196SCAGTCA12All0
ORF1ab/nsp15A1-B196Q196SCAgTCg12All0
ORF1ab/nsp15A1-B196Q196RcAgcGg22AY.1000.000092
ORF1ab/nsp15A1-B196Q196HcaGcaT22AY.1020.000053
ORF1ab/nsp15A1-B196Q196HcaGcaT22AY.1100.000225
ORF1ab/nsp15A1-B196Q196QcaGcaA22AY.120.10.000642
ORF1ab/nsp15A1-B196Q196QcaGcaA22AY.260.000057
ORF1ab/nsp15A1-B196Q196ECagGag22AY.30.00002
ORF1ab/nsp15A1-B196Q196LcAgcTg22AY.390.000049
ORF1ab/nsp15A1-B196Q196ECagGag22AY.40.000003
ORF1ab/nsp15A1-B196Q196HcaGcaT22AY.4.20.000043
ORF1ab/nsp15A1-B196Q196delCAG---22AY.430.000009
ORF1ab/nsp15A1-B196Q196RcAgcGg22AY.430.000009
ORF1ab/nsp15A1-B196Q196LcAgcTg22AY.440.000012
ORF1ab/nsp15A1-B196Q196HcaGcaT22AY.470.000062
ORF1ab/nsp15A1-B196Q196RcAgcGg22AY.9.10.000167
ORF1ab/nsp15A1-B196Q196HcaGcaT22AY.990.002099
ORF1ab/nsp15A1-B196Q196RcAgcGg22B.10.000018
ORF1ab/nsp15A1-B196Q196XCagTag22B.10.000018
ORF1ab/nsp15A1-B196Q196del1caGca-12B.10.000009
ORF1ab/nsp15A1-B196Q196del1Cag-ag12B.10.000009
ORF1ab/nsp15A1-B196Q196XCagTag22B.1.10.000036
ORF1ab/nsp15A1-B196Q196LcAgcTg22B.1.10.000036
ORF1ab/nsp15A1-B196Q196HcaGcaT22B.1.1.1580.02439
ORF1ab/nsp15A1-B196Q196HcaGcaT22B.1.1.2140.000111
ORF1ab/nsp15A1-B196Q196HcaGcaT22B.1.1.2940.002532
ORF1ab/nsp15A1-B196Q196RcAgcGg22B.1.1.580.010753
ORF1ab/nsp15A1-B196Q196delCAG---22B.1.1.70.000002
ORF1ab/nsp15A1-B196Q196RcAgcGg22B.1.177.600.000437
ORF1ab/nsp15A1-B196Q196RcAgcGg22B.1.20.000018
ORF1ab/nsp15A1-B196Q196HcaGcaT22B.1.2580.000133
ORF1ab/nsp15A1-B196Q196delCAG---22B.1.2580.000133
ORF1ab/nsp15A1-B196Q196HcaGcaT22B.1.258.90.01
ORF1ab/nsp15A1-B196Q196HcaGcaT22B.1.3510.000059
ORF1ab/nsp15A1-B196Q196HcaGcaT22B.1.3960.001411
ORF1ab/nsp15A1-B196Q196HcaGcaT22B.1.4040.002604
ORF1ab/nsp15A1-B196Q196HcaGcaT22B.1.4270.000101
ORF1ab/nsp15A1-B196Q196HcaGcaT22B.1.6090.000959
ORF1ab/nsp15A1-B196Q196del1caGca-22B.1.617.20.000008
ORF1ab/nsp15A1-B196Q196LcAgcTg22B.1.617.20.000008
ORF1ab/nsp15A1-B196Q196HcaGcaT22C.160.002121
ORF1ab/nsp15A1-B196Q196XCagTag22P.10.000032
ORF1ab/nsp15A1-B196Q196HcaGcaT22P.1.20.002312
ORF1ab/nsp15A1-B196Q196HcaGcaT22P.1.70.000639
ORF1ab/nsp15A1-B196Q196RcAgcGg11A.20.000662
ORF1ab/nsp15A1-B196Q196delCAG---11A.2.40.003367
ORF1ab/nsp15A1-B196Q196NCaGAaT11All0
ORF1ab/nsp15A1-B196Q196GCAgGGg11All0
ORF1ab/nsp15A1-B196Q196RcAgcGg11AU.30.00211
ORF1ab/nsp15A1-B196Q196RcAgcGg11AY.10.000396
ORF1ab/nsp15A1-B196Q196LcAgcTg11AY.1030.000006
ORF1ab/nsp15A1-B196Q196del1caGca-11AY.1030.000006
ORF1ab/nsp15A1-B196Q196RcAgcGg11AY.1200.000037
ORF1ab/nsp15A1-B196Q196del1caGca-11AY.120.10.000321
ORF1ab/nsp15A1-B196Q196HcaGcaT11AY.1210.000135
ORF1ab/nsp15A1-B196Q196HcaGcaT11AY.130.000161
ORF1ab/nsp15A1-B196Q196HcaGcaT11AY.200.000039
ORF1ab/nsp15A1-B196Q196QcaGcaA11AY.200.000039
ORF1ab/nsp15A1-B196Q196HcaGcaT11AY.230.00007
ORF1ab/nsp15A1-B196Q196delCAG---11AY.250.000006
ORF1ab/nsp15A1-B196Q196RcAgcGg11AY.250.000006
ORF1ab/nsp15A1-B196Q196RcAgcGg11AY.260.000028
ORF1ab/nsp15A1-B196Q196HcaGcaT11AY.280.00189
ORF1ab/nsp15A1-B196Q196RcAgcGg11AY.330.000067
ORF1ab/nsp15A1-B196Q196HcaGcaT11AY.360.000148
ORF1ab/nsp15A1-B196Q196QcaGcaA11AY.390.000025
ORF1ab/nsp15A1-B196Q196HcaGcaT11AY.39.10.00004
ORF1ab/nsp15A1-B196Q196delCAG---11AY.40.000002
ORF1ab/nsp15A1-B196Q196QcaGcaA11AY.420.00004
ORF1ab/nsp15A1-B196Q196LcAgcTg11AY.430.000004
ORF1ab/nsp15A1-B196Q196KCagAag11AY.430.000004
ORF1ab/nsp15A1-B196Q196delCAG---11AY.440.000006
ORF1ab/nsp15A1-B196Q196XCagTag11AY.440.000006
ORF1ab/nsp15A1-B196Q196HcaGcaT11AY.46.40.000165
ORF1ab/nsp15A1-B196Q196HcaGcaT11AY.46.60.000072
ORF1ab/nsp15A1-B196Q196XCagTag11AY.46.60.000072
ORF1ab/nsp15A1-B196Q196HcaGcaT11AY.550.000917
ORF1ab/nsp15A1-B196Q196HcaGcaT11AY.600.000938
ORF1ab/nsp15A1-B196Q196KCagAag11AY.620.000436
ORF1ab/nsp15A1-B196Q196ECagGag11AY.650.000533
ORF1ab/nsp15A1-B196Q196HcaGcaT11AY.700.000209
ORF1ab/nsp15A1-B196Q196HcaGcaT11AY.75.10.00018
ORF1ab/nsp15A1-B196Q196RcAgcGg11AY.840.000437
ORF1ab/nsp15A1-B196Q196delCAG---11AY.850.000427
ORF1ab/nsp15A1-B196Q196HcaGcaT11AY.90.000068
ORF1ab/nsp15A1-B196Q196delCAG---11AY.9.20.000037
ORF1ab/nsp15A1-B196Q196HcaGcaT11AY.940.000443
ORF1ab/nsp15A1-B196Q196HcaGcaT11AY.980.000079
ORF1ab/nsp15A1-B196Q196XCagTag11AZ.30.00152
ORF1ab/nsp15A1-B196Q196KCagAag11B0.000128
ORF1ab/nsp15A1-B196Q196XCagTag11B0.000128
ORF1ab/nsp15A1-B196Q196QcaGcaA11B.10.000009
ORF1ab/nsp15A1-B196Q196LcAgcTg11B.10.000009
ORF1ab/nsp15A1-B196Q196KCagAag11B.1.10.000018
ORF1ab/nsp15A1-B196Q196QcaGcaA11B.1.10.000018
ORF1ab/nsp15A1-B196Q196KCagAag11B.1.1.1350.004695
ORF1ab/nsp15A1-B196Q196HcaGcaT11B.1.1.1610.003534
ORF1ab/nsp15A1-B196Q196HcaGcaT11B.1.1.1760.000439
ORF1ab/nsp15A1-B196Q196HcaGcaT11B.1.1.2000.007463
ORF1ab/nsp15A1-B196Q196XCagTag11B.1.1.280.000311
ORF1ab/nsp15A1-B196Q196HcaGcaT11B.1.1.2840.000107
ORF1ab/nsp15A1-B196Q196XCagTag11B.1.1.3180.000302
ORF1ab/nsp15A1-B196Q196HcaGcaT11B.1.1.3260.001761
ORF1ab/nsp15A1-B196Q196XCagTag11B.1.1.3290.003846
ORF1ab/nsp15A1-B196Q196HcaGcaT11B.1.1.330.000421
ORF1ab/nsp15A1-B196Q196XCagTag11B.1.1.3790.03125
ORF1ab/nsp15A1-B196Q196HcaGcaT11B.1.1.4090.002833
ORF1ab/nsp15A1-B196Q196HcaGcaT11B.1.1.510.001718
ORF1ab/nsp15A1-B196Q196RcAgcGg11B.1.1.5190.00004
ORF1ab/nsp15A1-B196Q196HcaGcaT11B.1.1.5230.001563
ORF1ab/nsp15A1-B196Q196HcaGcaT11B.1.1.580.005376
ORF1ab/nsp15A1-B196Q196KCagAag11B.1.1.70.000001
ORF1ab/nsp15A1-B196Q196PcAGcCA11B.1.1.70.000001
ORF1ab/nsp15A1-B196Q196del1caGca-11B.1.1.70.000001
ORF1ab/nsp15A1-B196Q196delCAG---11B.1.1.700.000341
ORF1ab/nsp15A1-B196Q196XCagTag11B.1.1600.000031
ORF1ab/nsp15A1-B196Q196RcAgcGg11B.1.1770.000013
ORF1ab/nsp15A1-B196Q196HcaGcaT11B.1.1770.000013
ORF1ab/nsp15A1-B196Q196HcaGcaT11B.1.177.230.003236
ORF1ab/nsp15A1-B196Q196PcAgcCg11B.1.177.440.000519
ORF1ab/nsp15A1-B196Q196HcaGcaT11B.1.177.690.001484
ORF1ab/nsp15A1-B196Q196HcaGcaT11B.1.177.830.001481
ORF1ab/nsp15A1-B196Q196QcaGcaA11B.1.20.000009
ORF1ab/nsp15A1-B196Q196SCAGTCA11B.1.20.000009
ORF1ab/nsp15A1-B196Q196HcaGcaT11B.1.22.10.03125
ORF1ab/nsp15A1-B196Q196PcAgcCg11B.1.2210.000071
ORF1ab/nsp15A1-B196Q196HcaGcaT11B.1.2210.000071
ORF1ab/nsp15A1-B196Q196HcaGcaT11B.1.2320.000537
ORF1ab/nsp15A1-B196Q196XCagTag11B.1.2340.000132
ORF1ab/nsp15A1-B196Q196XCagTag11B.1.2580.000067
ORF1ab/nsp15A1-B196Q196ECagGag11B.1.258.170.000104
ORF1ab/nsp15A1-B196Q196GCAgGGg11B.1.3110.000275
ORF1ab/nsp15A1-B196Q196PcAgcCg11B.1.3440.008197
ORF1ab/nsp15A1-B196Q196XCagTag11B.1.3440.008197
ORF1ab/nsp15A1-B196Q196SCAgTCg11B.1.3440.008197
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