CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 186 | V186F | V6638F | nonsyn | Gtc | Ttc | 1085 | 1080 | 0.995392 | 20176-20178 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1080 | 1085 | All | 0.000207 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 175 | 175 | AY.44 | 0.001065 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 160 | 160 | B.1.595.1 | 0.935673 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 138 | 138 | AY.43 | 0.000611 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 78 | 78 | B.1.1.7 | 0.00007 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 70 | 70 | B.1.177.60 | 0.015291 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 68 | 68 | B.1.617.2 | 0.000256 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 55 | 55 | AY.4 | 0.000086 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 28 | 28 | B.1.177.89 | 0.682927 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 28 | 28 | B.1.2 | 0.000247 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 26 | 26 | B.1.177 | 0.000342 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 22 | 22 | AY.39 | 0.000544 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 21 | 21 | B.1.177.61 | 0.913043 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 15 | 15 | P.1 | 0.000236 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 12 | 13 | B.1 | 0.00011 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 11 | 11 | AY.39.1 | 0.000436 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 11 | 11 | AY.47 | 0.000342 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 7 | 7 | AY.70 | 0.00146 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 7 | 7 | AY.9 | 0.000473 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 7 | 7 | B.1.1.519 | 0.000278 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 5 | 6 | B.1.1 | 0.000091 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 6 | 6 | B.1.517 | 0.002562 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 3 | 3 | AD.2 | 0.000657 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 3 | 3 | N.5 | 0.0053 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 2 | 2 | A | 0.000774 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 2 | B.1.1.385 | 0.004464 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 2 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 2 | 2 | B.1.177.24 | 0.002591 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 2 | 2 | B.1.177.79 | 0.004684 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 2 | 2 | B.1.361 | 0.002577 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 2 | 2 | B.1.619.1 | 0.001283 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 2 | B.3.1 | 0.001658 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | B.45 | 0.003831 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | K.1 | 0.02381 |
ORF1ab/nsp15A1-B | 186 | V186F | Gtc | Ttc | 1 | 1 | P.1.1 | 0.000318 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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