CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 186

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp15A1-B	186	V186V	V6638V	syn	gtC	gtT	14599	14039	0.961641	20176-20178
ORF1ab/nsp15A1-B	186	V186V	V6638V	syn	gtC	gtA	14599	497	0.0340434	20176-20178
ORF1ab/nsp15A1-B	186	V186V	V6638V	syn	gtC	gtG	14599	63	0.00431536	20176-20178
ORF1ab/nsp15A1-B	186	V186F	V6638F	nonsyn	Gtc	Ttc	1085	1080	0.995392	20176-20178
ORF1ab/nsp15A1-B	186	V186F	V6638F	nonsyn	GtC	TtT	1085	5	0.00460829	20176-20178
ORF1ab/nsp15A1-B	186	V186I	V6638I	nonsyn	Gtc	Atc	194	192	0.989691	20176-20178
ORF1ab/nsp15A1-B	186	V186I	V6638I	nonsyn	GtC	AtA	194	2	0.0103093	20176-20178
ORF1ab/nsp15A1-B	186	V186A	V6638A	nonsyn	gTc	gCc	145	144	0.993103	20176-20178
ORF1ab/nsp15A1-B	186	V186A	V6638A	nonsyn	gTC	gCT	145	1	0.00689655	20176-20178
ORF1ab/nsp15A1-B	186	V186G	V6638G	nonsyn	gTc	gGc	61	29	0.47541	20176-20178
ORF1ab/nsp15A1-B	186	V186G	V6638G	nonsyn	gTC	gGA	61	27	0.442623	20176-20178
ORF1ab/nsp15A1-B	186	V186G	V6638G	nonsyn	gTC	gGT	61	4	0.0655738	20176-20178
ORF1ab/nsp15A1-B	186	V186G	V6638G	nonsyn	gTC	gGG	61	1	0.0163934	20176-20178
ORF1ab/nsp15A1-B	186	V186del	V6638del	del	GTC	---	55	55	1	20176-20178
ORF1ab/nsp15A1-B	186	V186L	V6638L	nonsyn	Gtc	Ctc	30	30	1	20176-20178
ORF1ab/nsp15A1-B	186	V186del2	V6638del2	del	GTc	--c	10	10	1	20176-20178
ORF1ab/nsp15A1-B	186	V186D	V6638D	nonsyn	gTc	gAc	9	8	0.888889	20176-20178
ORF1ab/nsp15A1-B	186	V186D	V6638D	nonsyn	gTC	gAT	9	1	0.111111	20176-20178
ORF1ab/nsp15A1-B	186	V186N	V6638N	nonsyn	GTc	AAc	6	6	1	20176-20178
ORF1ab/nsp15A1-B	186	V186C	V6638C	nonsyn	GTC	TGT	6	3	0.5	20176-20178
ORF1ab/nsp15A1-B	186	V186C	V6638C	nonsyn	GTc	TGc	6	3	0.5	20176-20178
ORF1ab/nsp15A1-B	186	V186del1	V6638del1	del	Gtc	-tc	3	2	0.666667	20176-20178
ORF1ab/nsp15A1-B	186	V186del1	V6638del1	del	gtC	gt-	3	1	0.333333	20176-20178
ORF1ab/nsp15A1-B	186	V186K	V6638K	nonsyn	GTC	AAA	2	2	1	20176-20178
ORF1ab/nsp15A1-B	186	V186S	V6638S	nonsyn	GTc	AGc	1	1	1	20176-20178
ORF1ab/nsp15A1-B	186	V186E	V6638E	nonsyn	gTC	gAA	1	1	1	20176-20178
ORF1ab/nsp15A1-B	186	V186T	V6638T	nonsyn	GTC	ACT	1	1	1	20176-20178
ORF1ab/nsp15A1-B	186	V186R	V6638R	nonsyn	GTC	AGA	1	1	1	20176-20178

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	14039	14599	All	0.002685
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	497	14599	All	0.000095
ORF1ab/nsp15A1-B	186	V186V	gtC	gtG	63	14599	All	0.000012
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3343	3811	B.1.1.7	0.002993
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	425	3811	B.1.1.7	0.00038
ORF1ab/nsp15A1-B	186	V186V	gtC	gtG	43	3811	B.1.1.7	0.000038
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1453	1453	B.1.177.57	0.408261
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1080	1085	All	0.000207
ORF1ab/nsp15A1-B	186	V186F	GtC	TtT	5	1085	All	0.000001
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1076	1084	AY.4	0.001675
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	8	1084	AY.4	0.000012
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	872	887	B.1.617.2	0.003283
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	15	887	B.1.617.2	0.000056
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	501	502	B.1.2	0.004411
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	502	B.1.2	0.000009
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	389	389	AY.29	0.006136
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	360	360	B.1.240	0.077603
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	327	328	P.1	0.005152
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	328	P.1	0.000016
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	266	267	AY.3	0.002646
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	267	AY.3	0.00001
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	266	266	AY.103	0.001652
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	266	266	B.1.177	0.003503
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	244	256	AY.43	0.001081
ORF1ab/nsp15A1-B	186	V186V	gtC	gtG	10	256	AY.43	0.000044
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	2	256	AY.43	0.000009
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	250	255	B.1	0.00229
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	3	255	B.1	0.000027
ORF1ab/nsp15A1-B	186	V186V	gtC	gtG	2	255	B.1	0.000018
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	236	236	AY.44	0.001436
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	208	208	B.1.565	0.168558
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	202	202	B.1.526	0.004748
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	192	194	All	0.000037
ORF1ab/nsp15A1-B	186	V186I	GtC	AtA	2	194	All	0
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	175	175	AY.44	0.001065
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	160	160	B.1.595.1	0.935673
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	153	153	AY.25	0.00092
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	144	145	All	0.000028
ORF1ab/nsp15A1-B	186	V186A	gTC	gCT	1	145	All	0
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	139	139	B.1.243	0.009672
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	138	138	AY.43	0.000611
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	134	134	B.1.1.214	0.007431
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	131	132	AY.42	0.00527
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	132	AY.42	0.00004
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	101	101	AY.36	0.01497
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	97	97	P.1.10	0.026139
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	94	94	AY.102	0.002492
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	88	88	B.1.429	0.002071
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	84	86	B.1.1	0.001524
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	2	86	B.1.1	0.000036
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	80	80	AY.4.2	0.001735
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	77	78	AY.20	0.002993
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	78	AY.20	0.000039
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	78	78	B.1.1.7	0.00007
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	76	76	B.1.1.265	0.239748
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	70	70	B.1.177.60	0.015291
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	68	68	B.1.617.2	0.000256
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	65	65	B.1.1.519	0.002581
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	64	64	AY.33	0.004274
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	62	62	AY.7.1	0.006987
ORF1ab/nsp15A1-B	186	V186G	gTc	gGc	29	61	All	0.000006
ORF1ab/nsp15A1-B	186	V186G	gTC	gGA	27	61	All	0.000005
ORF1ab/nsp15A1-B	186	V186G	gTC	gGT	4	61	All	0.000001
ORF1ab/nsp15A1-B	186	V186G	gTC	gGG	1	61	All	0
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	60	60	AY.75	0.003361
ORF1ab/nsp15A1-B	186	V186del	GTC	---	55	55	All	0.000011
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	55	55	AY.4	0.000086
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	53	53	B.1.351	0.001576
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	52	52	B.1.596	0.004531
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	49	49	B.1.160	0.001528
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	49	49	B.1.177.54	0.029715
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	49	49	B.1.562	0.907407
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	49	49	C.36.3	0.027794
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	47	47	B.1.587	0.089184
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	45	45	B.1.617.2	0.000169
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	44	44	AY.3.1	0.003751
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	39	39	B.1.1.227	0.169565
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	37	37	AY.5	0.000764
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	37	37	B.1.621	0.003275
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	33	36	AY.118	0.002067
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	3	36	AY.118	0.000188
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	36	36	B.1.401	0.295082
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	32	33	AY.23	0.002232
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	33	AY.23	0.00007
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	33	33	AY.47	0.001026
ORF1ab/nsp15A1-B	186	V186L	Gtc	Ctc	30	30	All	0.000006
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	30	30	AY.26	0.000849
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	30	30	AY.39	0.000741
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	30	30	B.1.509	0.025974
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	28	28	B.1.177.89	0.682927
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	28	28	B.1.2	0.000247
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	28	28	C.37	0.00325
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	27	27	B.1.177.17	0.022167
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	26	26	AY.100	0.001196
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	26	26	B.1.177	0.000342
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	25	25	AY.46.4	0.004113
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	25	25	B.1.1.222	0.0051
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	24	24	P.1.10.2	1
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	22	23	B.1.221	0.001563
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	23	B.1.221	0.000071
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	23	23	B.1.575	0.006978
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	22	22	AY.39	0.000544
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	20	21	AY.46.6	0.001444
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	21	AY.46.6	0.000072
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	21	21	AY.85	0.008971
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	21	21	B.1.177.61	0.913043
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	21	21	B.1.36	0.003064
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	20	21	P.1.14	0.000956
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	21	P.1.14	0.000048
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	21	21	P.1.17	0.003397
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	20	20	AY.119	0.000706
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	20	20	B.1.1.70	0.006821
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	19	19	AY.4	0.00003
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	19	19	AY.48	0.008837
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	15	19	AY.61	0.001572
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	19	AY.61	0.000419
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	19	19	B.1.1.462	0.163793
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	18	18	AY.120	0.000669
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	18	18	AY.14	0.001584
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	18	18	AY.97	0.030612
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	18	18	AY.99.2	0.001659
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	18	18	B.1.1.7	0.000016
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	18	18	B.1.177.63	0.048649
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	18	18	B.1.234	0.002375
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	18	18	B.1.258	0.001198
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	18	18	B.1.311	0.004942
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	18	18	B.1.427	0.000909
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	16	16	AY.66	0.017112
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	16	16	B.1	0.000147
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	16	16	B.1.1.207	0.018913
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	16	16	B.1.1.37	0.003086
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	15	15	AY.117	0.001268
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	15	15	AY.34	0.001454
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	15	15	B.1.1.241	0.031056
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	15	15	B.1.1.434	0.005228
ORF1ab/nsp15A1-B	186	V186L	Gtc	Ctc	15	15	B.1.617.2	0.000056
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	15	15	P.1	0.000236
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	14	14	AY.111	0.002564
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	14	14	AY.98	0.001106
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	14	14	B.1.1.176	0.006151
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	14	14	P.1.15	0.003253
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	12	13	B.1	0.00011
ORF1ab/nsp15A1-B	186	V186F	GtC	TtT	1	13	B.1	0.000009
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	13	13	B.1.1.28	0.004046
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	13	13	P.2	0.002426
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	13	13	R.1	0.00117
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	12	12	AY.4	0.000019
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	10	12	AY.45	0.001217
ORF1ab/nsp15A1-B	186	V186V	gtC	gtG	2	12	AY.45	0.000243
ORF1ab/nsp15A1-B	186	V186G	gTC	gGA	11	12	AY.69	0.002053
ORF1ab/nsp15A1-B	186	V186G	gTc	gGc	1	12	AY.69	0.000187
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	12	12	B.1.1.33	0.005051
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	12	12	B.1.1.7	0.000011
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	12	12	B.1.258.17	0.001248
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	11	12	D.2	0.000825
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	12	D.2	0.000075
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	11	11	AY.103	0.000068
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	11	11	AY.29	0.000174
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	11	11	AY.39.1	0.000436
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	11	11	AY.47	0.000342
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	11	11	AY.9.2	0.000404
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	11	11	B.1.177.53	0.026316
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	11	11	B.1.177.60	0.002403
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	11	11	B.1.177.83	0.016296
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	11	11	B.1.623	0.005901
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	11	11	B.29	0.038596
ORF1ab/nsp15A1-B	186	V186del2	GTc	--c	10	10	All	0.000002
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	10	10	AY.103	0.000062
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	10	10	B.1.1.306	0.004384
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	10	10	B.1.1.368	0.030864
ORF1ab/nsp15A1-B	186	V186del	GTC	---	10	10	B.1.1.7	0.000009
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	10	10	B.1.429	0.000235
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	10	10	B.1.527	0.037037
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	10	10	B.1.577	0.006873
ORF1ab/nsp15A1-B	186	V186D	gTc	gAc	8	9	All	0.000002
ORF1ab/nsp15A1-B	186	V186D	gTC	gAT	1	9	All	0
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	9	9	AY.19	0.010262
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	9	9	AY.4.5	0.000967
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	9	9	AY.46	0.000937
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	9	9	B.1.1.416	0.008145
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	8	8	AY.121	0.001083
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	8	8	AY.3	0.00008
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	8	8	AY.37	0.002528
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	8	8	B.1.1.297	0.017897
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	8	8	B.1.243	0.000557
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	8	8	Q.1	0.001011
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	8	Q.8	0.000989
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	2	8	Q.8	0.00033
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	7	7	AY.39.1	0.000277
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	6	7	AY.43	0.000027
ORF1ab/nsp15A1-B	186	V186I	GtC	AtA	1	7	AY.43	0.000004
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	7	7	AY.70	0.00146
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	7	7	AY.9	0.000473
ORF1ab/nsp15A1-B	186	V186G	gTc	gGc	4	7	B.1	0.000037
ORF1ab/nsp15A1-B	186	V186G	gTC	gGT	2	7	B.1	0.000018
ORF1ab/nsp15A1-B	186	V186G	gTC	gGA	1	7	B.1	0.000009
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	7	7	B.1.1.17	0.116667
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	7	7	B.1.1.317	0.002882
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	7	7	B.1.1.519	0.000278
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	7	7	B.1.177.25	0.104478
ORF1ab/nsp15A1-B	186	V186del	GTC	---	7	7	B.1.2	0.000062
ORF1ab/nsp15A1-B	186	V186N	GTc	AAc	6	6	All	0.000001
ORF1ab/nsp15A1-B	186	V186C	GTc	TGc	3	6	All	0.000001
ORF1ab/nsp15A1-B	186	V186C	GTC	TGT	3	6	All	0.000001
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	6	AY.113	0.000854
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	6	6	AY.14	0.000528
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	6	AY.23.1	0.002504
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	6	6	AY.34	0.000582
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	6	6	AY.47	0.000187
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	6	AY.52	0.004886
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	6	AY.74	0.000694
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	6	AY.75.1	0.000902
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	6	AY.75.1	0.00018
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	6	AY.9	0.000406
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	6	6	AY.91	0.004383
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	6	AY.98.1	0.000291
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	5	6	B.1.1	0.000091
ORF1ab/nsp15A1-B	186	V186F	GtC	TtT	1	6	B.1.1	0.000018
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	6	6	B.1.160	0.000187
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	6	B.1.177.48	0.01875
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	6	B.1.177.81	0.001136
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	6	B.1.324	0.008026
ORF1ab/nsp15A1-B	186	V186V	gtC	gtG	1	6	B.1.324	0.001605
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	6	6	B.1.517	0.002562
ORF1ab/nsp15A1-B	186	V186V	gtC	gtG	4	6	B.1.525	0.000453
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	6	B.1.525	0.000226
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	6	B.1.567	0.02
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	6	B.1.619	0.005226
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	6	6	B.1.637	0.000438
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	A	0.001935
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	5	5	AY.102	0.000133
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	5	5	AY.20	0.000194
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	AY.27	0.000324
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	AY.29.1	0.001103
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	5	5	AY.3	0.00005
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	AY.53	0.001438
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	5	5	AY.61	0.000524
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	5	5	AY.98.1	0.000242
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	B	0.000639
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	B.1.1.311	0.001791
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	B.1.1.373	0.119048
ORF1ab/nsp15A1-B	186	V186G	gTC	gGA	3	5	B.1.1.7	0.000003
ORF1ab/nsp15A1-B	186	V186G	gTc	gGc	1	5	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	186	V186G	gTC	gGG	1	5	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	B.1.160.16	0.004647
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	B.1.177.86	0.000917
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	B.1.517	0.002135
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	B.1.550	0.068493
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	B.1.617.1	0.000645
ORF1ab/nsp15A1-B	186	V186del	GTC	---	5	5	B.1.617.2	0.000019
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	B.1.625	0.011765
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	B.1.626	0.028571
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	B.31	0.018657
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	5	5	N.5	0.008834
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	5	5	P.1	0.000079
ORF1ab/nsp15A1-B	186	V186del	GTC	---	4	4		0.222222
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	A.1	0.001127
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	A.19	0.037736
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	AD.2	0.000876
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	AY.1	0.001583
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	AY.12	0.001264
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	AY.13	0.000644
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	4	4	AY.26	0.000113
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	AY.28	0.007561
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	4	4	AY.39	0.000099
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	AY.6	0.000165
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	AY.67	0.001857
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	4	4	B.1	0.000037
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.1.1	0.001307
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.1.157	0.003653
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	4	B.1.1.25	0.001706
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	4	B.1.1.25	0.000569
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.1.369	0.001785
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.1.404	0.063492
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.177.15	0.002524
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.177.51	0.018265
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.177.7	0.000659
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.177.80	0.007648
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	4	4	B.1.2	0.000035
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	4	4	B.1.2	0.000035
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	4	4	B.1.239	0.004884
ORF1ab/nsp15A1-B	186	V186N	GTc	AAc	4	4	B.1.243	0.000278
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.258.3	0.0067
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	4	B.1.369	0.000856
ORF1ab/nsp15A1-B	186	V186V	gtC	gtG	1	4	B.1.369	0.000285
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.400	0.001716
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.478	0.047059
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.560	0.018519
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	B.1.595	0.001044
ORF1ab/nsp15A1-B	186	V186G	gTc	gGc	2	4	B.1.619.1	0.001283
ORF1ab/nsp15A1-B	186	V186G	gTC	gGA	2	4	B.1.619.1	0.001283
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	4	4	C.35	0.003096
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	3	3	AD.2	0.000657
ORF1ab/nsp15A1-B	186	V186del1	Gtc	-tc	2	3	All	0
ORF1ab/nsp15A1-B	186	V186del1	gtC	gt-	1	3	All	0
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	AY.10	0.00159
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	3	3	AY.100	0.000138
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	AY.101	0.001471
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	AY.116.1	0.000934
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	3	3	AY.14	0.000264
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	AY.16	0.001139
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	3	3	AY.25	0.000018
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	3	3	AY.29	0.000047
ORF1ab/nsp15A1-B	186	V186G	gTc	gGc	3	3	AY.4	0.000005
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	3	3	AY.42	0.000121
ORF1ab/nsp15A1-B	186	V186del2	GTc	--c	3	3	AY.43	0.000013
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	AY.49	0.009585
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	AY.5.4	0.00083
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	AY.82	0.004071
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	AY.9.1	0.000251
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	AY.90	0.002053
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	3	3	AY.98	0.000237
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	B.1.1.10	0.003344
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	3	3	B.1.1.214	0.000166
ORF1ab/nsp15A1-B	186	V186L	Gtc	Ctc	3	3	B.1.1.7	0.000003
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	B.1.160.27	0.045455
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	B.1.177.21	0.000229
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	B.1.177.62	0.003576
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	3	3	B.1.258	0.0002
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	B.1.270	0.016854
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	3	B.1.36.1	0.002281
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	3	B.1.36.1	0.00114
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	B.1.378	0.020548
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	B.1.389	0.003006
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	B.1.438.1	0.000322
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	B.1.466.2	0.001174
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	3	3	B.1.470	0.004213
ORF1ab/nsp15A1-B	186	V186del	GTC	---	3	3	B.1.526	0.000071
ORF1ab/nsp15A1-B	186	V186L	Gtc	Ctc	3	3	B.1.605	0.017857
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	3	3	B.1.617.2	0.000011
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	3	3	N.5	0.0053
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	2	2	A	0.000774
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	A.2.5	0.000998
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	A.23.1	0.001408
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	A.29	0.010638
ORF1ab/nsp15A1-B	186	V186K	GTC	AAA	2	2	All	0
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	2	2	AY.102	0.000053
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.110	0.000225
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	2	2	AY.113	0.000285
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.116	0.000574
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.120.2.1	0.000997
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	2	2	AY.16	0.000759
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.16.1	0.00094
ORF1ab/nsp15A1-B	186	V186L	Gtc	Ctc	2	2	AY.16.1	0.00094
ORF1ab/nsp15A1-B	186	V186G	gTc	gGc	2	2	AY.20	0.000078
ORF1ab/nsp15A1-B	186	V186G	gTc	gGc	2	2	AY.25	0.000012
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	2	2	AY.27	0.000129
ORF1ab/nsp15A1-B	186	V186D	gTc	gAc	2	2	AY.3	0.00002
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	2	2	AY.3.1	0.000171
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	2	2	AY.33	0.000134
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	2	AY.34.1	0.00051
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	2	AY.34.1	0.00051
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.35	0.000466
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.38	0.000999
ORF1ab/nsp15A1-B	186	V186L	Gtc	Ctc	2	2	AY.4	0.000003
ORF1ab/nsp15A1-B	186	V186G	gTC	gGA	1	2	AY.43	0.000004
ORF1ab/nsp15A1-B	186	V186G	gTc	gGc	1	2	AY.43	0.000004
ORF1ab/nsp15A1-B	186	V186L	Gtc	Ctc	2	2	AY.44	0.000012
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	2	2	AY.44	0.000012
ORF1ab/nsp15A1-B	186	V186del2	GTc	--c	2	2	AY.44	0.000012
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	2	2	AY.45	0.000243
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	2	2	AY.46	0.000208
ORF1ab/nsp15A1-B	186	V186I	GtC	AtA	1	2	AY.46.6	0.000072
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	2	AY.46.6	0.000072
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	2	2	AY.49	0.00639
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.50	0.001599
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.54	0.000191
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.55	0.001835
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	2	2	AY.57	0.001312
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.64	0.00119
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.68	0.000547
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	2	AY.69	0.000187
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	2	AY.69	0.000187
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.7.2	0.001119
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.71	0.00095
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	2	2	AY.74	0.000231
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	2	2	AY.87	0.001665
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	AY.89	0.009804
ORF1ab/nsp15A1-B	186	V186L	Gtc	Ctc	2	2	B.1	0.000018
ORF1ab/nsp15A1-B	186	V186C	GTC	TGT	1	2	B.1	0.000009
ORF1ab/nsp15A1-B	186	V186C	GTc	TGc	1	2	B.1	0.000009
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.159	0.009346
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.180	0.021505
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	2	2	B.1.1.216	0.001781
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.27	0.011299
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.284	0.000215
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.318	0.000604
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	2	2	B.1.1.33	0.000842
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	2	2	B.1.1.337	0.007194
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.348	0.001592
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.385	0.008929
ORF1ab/nsp15A1-B	186	V186F	GtC	TtT	1	2	B.1.1.385	0.004464
ORF1ab/nsp15A1-B	186	V186C	GTC	TGT	1	2	B.1.1.385	0.004464
ORF1ab/nsp15A1-B	186	V186C	GTc	TGc	1	2	B.1.1.385	0.004464
ORF1ab/nsp15A1-B	186	V186G	gTC	gGT	1	2	B.1.1.385	0.004464
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	2	B.1.1.385	0.004464
ORF1ab/nsp15A1-B	186	V186G	gTc	gGc	1	2	B.1.1.385	0.004464
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.389	0.012121
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.39	0.001019
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.448	0.004065
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	2	2	B.1.1.464	0.002946
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.521	0.010695
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.525	0.010929
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.1.63	0.000772
ORF1ab/nsp15A1-B	186	V186G	gTc	gGc	1	2	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	2	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	186	V186G	gTC	gGT	1	2	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	186	V186C	GTc	TGc	1	2	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	186	V186F	GtC	TtT	1	2	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	186	V186C	GTC	TGT	1	2	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.111	0.00235
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.160.24	0.00885
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.177.12	0.000303
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.177.16	0.001329
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	2	2	B.1.177.24	0.002591
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	2	2	B.1.177.79	0.004684
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.192	0.018519
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	2	2	B.1.221	0.000142
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	2	2	B.1.243	0.000139
ORF1ab/nsp15A1-B	186	V186del	GTC	---	2	2	B.1.258	0.000133
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.258.24	0.021505
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.279	0.001027
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.346	0.002621
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.349	0.00143
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	2	B.1.36	0.000146
ORF1ab/nsp15A1-B	186	V186A	gTC	gCT	1	2	B.1.36	0.000146
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.36.29	0.001035
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.36.31	0.003503
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	2	2	B.1.361	0.002577
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	2	2	B.1.367	0.001585
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.408	0.00738
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.426	0.002018
ORF1ab/nsp15A1-B	186	V186G	gTC	gGA	2	2	B.1.429	0.000047
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.459	0.008163
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.499	0.002101
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.535	0.057143
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.574	0.004301
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.586	0.021978
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	2	2	B.1.596	0.000174
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	2	2	B.1.617.1	0.000258
ORF1ab/nsp15A1-B	186	V186del2	GTc	--c	2	2	B.1.617.2	0.000008
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	2	2	B.1.619.1	0.001283
ORF1ab/nsp15A1-B	186	V186G	gTc	gGc	1	2	B.1.620	0.000946
ORF1ab/nsp15A1-B	186	V186G	gTC	gGA	1	2	B.1.620	0.000946
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.621.1	0.001012
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	B.1.628	0.000705
ORF1ab/nsp15A1-B	186	V186G	gTc	gGc	1	2	B.28	0.003279
ORF1ab/nsp15A1-B	186	V186G	gTC	gGA	1	2	B.28	0.003279
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	2	B.3.1	0.001658
ORF1ab/nsp15A1-B	186	V186F	GtC	TtT	1	2	B.3.1	0.001658
ORF1ab/nsp15A1-B	186	V186G	gTC	gGA	1	2	D.2	0.000075
ORF1ab/nsp15A1-B	186	V186G	gTc	gGc	1	2	D.2	0.000075
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	P.1.1	0.000635
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	P.1.12	0.000968
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	2	2	P.1.14	0.000096
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	P.1.4	0.001953
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	2	2	P.2	0.000373
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	P.4	0.007605
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	2	2	Q.3	0.00029
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	A.2.4	0.003367
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	A.2.5.2	0.001572
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	A.5	0.001923
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AE.8	0.000489
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AH.2	0.012048
ORF1ab/nsp15A1-B	186	V186E	gTC	gAA	1	1	All	0
ORF1ab/nsp15A1-B	186	V186S	GTc	AGc	1	1	All	0
ORF1ab/nsp15A1-B	186	V186T	GTC	ACT	1	1	All	0
ORF1ab/nsp15A1-B	186	V186R	GTC	AGA	1	1	All	0
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AU.1	0.001266
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	AY.100	0.000046
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	AY.101	0.00049
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	AY.102	0.000027
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	AY.103	0.000006
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	AY.103	0.000006
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	AY.105	0.000643
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.106	0.000335
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.107	0.000466
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.108	0.001103
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	AY.109	0.00074
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.109	0.00074
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	AY.113	0.000142
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.114	0.000231
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	AY.114	0.000231
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	AY.118	0.000063
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	AY.120	0.000037
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	AY.13	0.000161
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	AY.16.1	0.00047
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	AY.20	0.000039
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.21	0.001898
ORF1ab/nsp15A1-B	186	V186G	gTc	gGc	1	1	AY.23	0.00007
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.24	0.000431
ORF1ab/nsp15A1-B	186	V186L	Gtc	Ctc	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	AY.26	0.000028
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	AY.3	0.00001
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	AY.3	0.00001
ORF1ab/nsp15A1-B	186	V186T	GTC	ACT	1	1	AY.3	0.00001
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	AY.3.1	0.000085
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	AY.34	0.000097
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	AY.36	0.000148
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	AY.4	0.000002
ORF1ab/nsp15A1-B	186	V186del2	GTc	--c	1	1	AY.4	0.000002
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	AY.4.2	0.000022
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	AY.4.2	0.000022
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	AY.4.3	0.000842
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	AY.41	0.000294
ORF1ab/nsp15A1-B	186	V186D	gTc	gAc	1	1	AY.42	0.00004
ORF1ab/nsp15A1-B	186	V186G	gTc	gGc	1	1	AY.42	0.00004
ORF1ab/nsp15A1-B	186	V186R	GTC	AGA	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	186	V186S	GTc	AGc	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	186	V186G	gTc	gGc	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	AY.45	0.000122
ORF1ab/nsp15A1-B	186	V186G	gTc	gGc	1	1	AY.46	0.000104
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	AY.46	0.000104
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	AY.46.2	0.000635
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.46.2	0.000635
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.46.3	0.000934
ORF1ab/nsp15A1-B	186	V186D	gTc	gAc	1	1	AY.46.6	0.000072
ORF1ab/nsp15A1-B	186	V186N	GTc	AAc	1	1	AY.46.6	0.000072
ORF1ab/nsp15A1-B	186	V186E	gTC	gAA	1	1	AY.46.6	0.000072
ORF1ab/nsp15A1-B	186	V186K	GTC	AAA	1	1	AY.46.6	0.000072
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	AY.48	0.000465
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.5.1	0.003759
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.5.3	0.000337
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	AY.5.3	0.000337
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	AY.51	0.000909
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	AY.51	0.000909
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	AY.54	0.000095
ORF1ab/nsp15A1-B	186	V186D	gTc	gAc	1	1	AY.59	0.00053
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.59	0.00053
ORF1ab/nsp15A1-B	186	V186N	GTc	AAc	1	1	AY.59	0.00053
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	AY.59	0.00053
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	AY.6	0.000041
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	AY.67	0.000464
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	AY.68	0.000274
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.70	0.000209
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	AY.70	0.000209
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	AY.70	0.000209
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	AY.75	0.000056
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	AY.75.1	0.00018
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.76	0.004831
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	AY.8	0.000606
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	AY.81	0.001992
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.81	0.001992
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	AY.84	0.000437
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.84	0.000437
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	AY.85	0.000427
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.87	0.000833
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	AY.88	0.000884
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	AY.9.1	0.000084
ORF1ab/nsp15A1-B	186	V186del2	GTc	--c	1	1	AY.9.2	0.000037
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	AY.9.2	0.000037
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.92	0.000287
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.95	0.000761
ORF1ab/nsp15A1-B	186	V186G	gTc	gGc	1	1	AY.95	0.000761
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.96	0.002075
ORF1ab/nsp15A1-B	186	V186del2	GTc	--c	1	1	AY.99	0.001049
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	AY.99	0.001049
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	AY.99.2	0.000092
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	B	0.000128
ORF1ab/nsp15A1-B	186	V186D	gTc	gAc	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.115	0.008929
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.117	0.009709
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.148	0.008772
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.153	0.001095
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	B.1.1.207	0.001182
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.216	0.00089
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.218	0.007692
ORF1ab/nsp15A1-B	186	V186G	gTC	gGA	1	1	B.1.1.222	0.000204
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	B.1.1.222	0.000204
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.231	0.003096
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	B.1.1.243	0.004082
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	B.1.1.25	0.000569
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.269	0.001353
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.270	0.010309
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.274	0.005051
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.282	0.011628
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.303	0.002762
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.304	0.002809
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.309	0.005848
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.312	0.001912
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.315	0.008475
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.316	0.000925
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.326	0.001761
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.344	0.010753
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.351	0.002793
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.356	0.008547
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.367	0.055556
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	B.1.1.37	0.000193
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.397	0.002252
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.411	0.014706
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.432	0.001266
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.440	0.011765
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.507	0.008696
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.517	0.006803
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.1.528	0.004808
ORF1ab/nsp15A1-B	186	V186del1	gtC	gt-	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.110.3	0.000718
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	B.1.111	0.001175
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	1	B.1.118	0.006711
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.139	0.000733
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.146	0.004237
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.147	0.000756
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.153	0.018868
ORF1ab/nsp15A1-B	186	V186G	gTC	gGA	1	1	B.1.160	0.000031
ORF1ab/nsp15A1-B	186	V186K	GTC	AAA	1	1	B.1.160	0.000031
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.160.10	0.008065
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.160.18	0.007299
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	1	B.1.160.28	0.002924
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.160.31	0.008065
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.167	0.007812
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	B.1.177	0.000013
ORF1ab/nsp15A1-B	186	V186G	gTc	gGc	1	1	B.1.177	0.000013
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	B.1.177.12	0.000152
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	B.1.177.19	0.001431
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.177.20	0.001517
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	B.1.177.33	0.001645
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	B.1.177.4	0.000211
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.177.4	0.000211
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.177.42	0.000894
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.177.56	0.000668
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.177.6	0.000977
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.177.65	0.000665
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.177.75	0.001041
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.177.77	0.000726
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.177.79	0.002342
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.199	0.004132
ORF1ab/nsp15A1-B	186	V186G	gTc	gGc	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	186	V186del1	Gtc	-tc	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.206	0.000816
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.22	0.001318
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.223	0.002778
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	B.1.236	0.002053
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	B.1.240	0.000216
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.241	0.000812
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.252	0.006623
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.258.19	0.007092
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.260	0.003344
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.265	0.001271
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.287	0.030303
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.315	0.006061
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	B.1.320	0.001245
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.320	0.001245
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	B.1.329	0.000608
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	1	B.1.332	0.003497
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.336	0.002439
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.351.2	0.000303
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.351.3	0.000876
ORF1ab/nsp15A1-B	186	V186D	gTc	gAc	1	1	B.1.36	0.000146
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	B.1.36.1	0.00114
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.36.16	0.001425
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.36.17	0.000494
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.36.18	0.00042
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.36.25	0.002208
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.36.38	0.001642
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.36.7	0.004
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	B.1.36.8	0.001
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.36.8	0.001
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.361	0.001289
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.362.2	0.004717
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.366	0.004878
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.367	0.000792
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	B.1.371	0.001122
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	B.1.389	0.001002
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.396	0.000706
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.398	0.002976
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	B.1.399	0.001934
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.409	0.000781
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	B.1.409	0.000781
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.416	0.001269
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	B.1.416.1	0.001563
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.416.1	0.001563
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	B.1.427	0.00005
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	B.1.427	0.00005
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.453	0.003236
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.467	0.04
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.468	0.005714
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.471	0.002732
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	B.1.485	0.014925
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	B.1.497	0.000315
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.503	0.002488
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.523	0.002451
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	B.1.526	0.000024
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.532	0.006211
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.540	0.009709
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.561	0.000397
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	B.1.567	0.003333
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.568	0.001111
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	1	B.1.576	0.000907
ORF1ab/nsp15A1-B	186	V186del1	Gtc	-tc	1	1	B.1.576	0.000907
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	B.1.577	0.000687
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.582	0.000491
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	B.1.585	0.027778
ORF1ab/nsp15A1-B	186	V186D	gTc	gAc	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	186	V186G	gTC	gGA	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	B.1.602	0.006536
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.1.609	0.000479
ORF1ab/nsp15A1-B	186	V186D	gTC	gAT	1	1	B.1.617.1	0.000129
ORF1ab/nsp15A1-B	186	V186G	gTC	gGA	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	B.1.617.3	0.002985
ORF1ab/nsp15A1-B	186	V186del	GTC	---	1	1	B.1.620	0.000946
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	B.1.78	0.008547
ORF1ab/nsp15A1-B	186	V186V	gtC	gtA	1	1	B.28	0.003279
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.3	0.000831
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.3.1	0.001658
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.40	0.000364
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	B.41	0.008
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	B.45	0.003831
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	B.45	0.003831
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	C.1.2	0.004255
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	C.11	0.010638
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	C.16	0.00106
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	C.36	0.000911
ORF1ab/nsp15A1-B	186	V186G	gTc	gGc	1	1	C.36	0.000911
ORF1ab/nsp15A1-B	186	V186I	Gtc	Atc	1	1	C.37	0.000116
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	C.8	0.004464
ORF1ab/nsp15A1-B	186	V186A	gTc	gCc	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	K.1	0.02381
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	N.1	0.016949
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	N.10	0.029412
ORF1ab/nsp15A1-B	186	V186F	Gtc	Ttc	1	1	P.1.1	0.000318
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	P.1.13	0.000898
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	P.1.16	0.000374
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	P.1.2	0.001156
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	P.1.7	0.000319
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	P.3	0.001595
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	Q.4	0.000455
ORF1ab/nsp15A1-B	186	V186V	gtC	gtT	1	1	W.1	0.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.