CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 185 | V185I | V6637I | nonsyn | Gtt | Att | 289 | 288 | 0.99654 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185I | V6637I | nonsyn | GtT | AtA | 289 | 1 | 0.00346021 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185V | V6637V | syn | gtT | gtC | 272 | 151 | 0.555147 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185V | V6637V | syn | gtT | gtA | 272 | 71 | 0.261029 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185V | V6637V | syn | gtT | gtG | 272 | 50 | 0.183824 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185F | V6637F | nonsyn | Gtt | Ttt | 220 | 220 | 1 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185A | V6637A | nonsyn | gTt | gCt | 71 | 69 | 0.971831 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185A | V6637A | nonsyn | gTT | gCA | 71 | 2 | 0.028169 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185del | V6637del | del | GTT | --- | 67 | 67 | 1 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185G | V6637G | nonsyn | gTt | gGt | 19 | 17 | 0.894737 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185G | V6637G | nonsyn | gTT | gGA | 19 | 2 | 0.105263 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185L | V6637L | nonsyn | Gtt | Ctt | 10 | 8 | 0.8 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185L | V6637L | nonsyn | GtT | CtA | 10 | 2 | 0.2 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185D | V6637D | nonsyn | gTt | gAt | 7 | 7 | 1 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185del1 | V6637del1 | del | GtT | -tG | 5 | 2 | 0.4 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185R | V6637R | nonsyn | GTt | CGt | 5 | 2 | 0.4 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185del1 | V6637del1 | del | Gtt | -tt | 5 | 2 | 0.4 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185R | V6637R | nonsyn | GTT | AGA | 5 | 2 | 0.4 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185R | V6637R | nonsyn | GTT | CGA | 5 | 1 | 0.2 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185del1 | V6637del1 | del | gTt | g-t | 5 | 1 | 0.2 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185C | V6637C | nonsyn | GTt | TGt | 3 | 3 | 1 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185S | V6637S | nonsyn | GTt | AGt | 1 | 1 | 1 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185del2 | V6637del2 | del | gTT | g-- | 1 | 1 | 1 | 20173-20175 |
ORF1ab/nsp15A1-B | 185 | V185P | V6637P | nonsyn | GTT | CCG | 1 | 1 | 1 | 20173-20175 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 288 | 289 | All | 0.000055 |
ORF1ab/nsp15A1-B | 185 | V185I | GtT | AtA | 1 | 289 | All | 0 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 151 | 272 | All | 0.000029 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtA | 71 | 272 | All | 0.000014 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtG | 50 | 272 | All | 0.00001 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 220 | 220 | All | 0.000042 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 147 | 147 | AY.4 | 0.000229 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 69 | 71 | All | 0.000013 |
ORF1ab/nsp15A1-B | 185 | V185A | gTT | gCA | 2 | 71 | All | 0 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 67 | 67 | All | 0.000013 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtG | 34 | 48 | B.1.1.7 | 0.00003 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 7 | 48 | B.1.1.7 | 0.000006 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtA | 7 | 48 | B.1.1.7 | 0.000006 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 35 | 35 | B.1.617.2 | 0.000132 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 28 | 28 | B.1.1.7 | 0.000025 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 22 | 26 | AY.4 | 0.000034 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtA | 4 | 26 | AY.4 | 0.000006 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtA | 22 | 23 | B.1.1.519 | 0.000874 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 23 | B.1.1.519 | 0.00004 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 23 | 23 | B.1.1.7 | 0.000021 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 22 | 22 | AY.4 | 0.000034 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtA | 16 | 20 | AY.44 | 0.000097 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 4 | 20 | AY.44 | 0.000024 |
ORF1ab/nsp15A1-B | 185 | V185G | gTt | gGt | 17 | 19 | All | 0.000003 |
ORF1ab/nsp15A1-B | 185 | V185G | gTT | gGA | 2 | 19 | All | 0 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 18 | 18 | AY.61 | 0.001886 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 17 | 17 | B.1.1.152 | 0.68 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 16 | 16 | AY.61 | 0.001676 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 15 | 15 | B.1.1 | 0.000272 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 14 | 14 | B.1.36 | 0.002043 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 14 | 14 | B.1.617.2 | 0.000053 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 12 | 13 | B.1 | 0.00011 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtA | 1 | 13 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 12 | 12 | B.1.2 | 0.000106 |
ORF1ab/nsp15A1-B | 185 | V185L | Gtt | Ctt | 8 | 10 | All | 0.000002 |
ORF1ab/nsp15A1-B | 185 | V185L | GtT | CtA | 2 | 10 | All | 0 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 6 | 10 | B.1.2 | 0.000053 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtA | 4 | 10 | B.1.2 | 0.000035 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 9 | 10 | B.1.617.2 | 0.000034 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtG | 1 | 10 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 9 | 9 | AY.111 | 0.001648 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 9 | 9 | AY.16 | 0.003417 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 9 | 9 | AY.47 | 0.00028 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtG | 8 | 8 | B.1.466.2 | 0.00313 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 8 | 8 | C.13 | 0.205128 |
ORF1ab/nsp15A1-B | 185 | V185D | gTt | gAt | 7 | 7 | All | 0.000001 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 7 | 7 | AY.116.1 | 0.00218 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 7 | 7 | B.1.177.51 | 0.031963 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp15A1-B | 185 | V185del1 | Gtt | -tt | 2 | 5 | All | 0 |
ORF1ab/nsp15A1-B | 185 | V185R | GTT | AGA | 2 | 5 | All | 0 |
ORF1ab/nsp15A1-B | 185 | V185R | GTt | CGt | 2 | 5 | All | 0 |
ORF1ab/nsp15A1-B | 185 | V185del1 | GtT | -tG | 2 | 5 | All | 0 |
ORF1ab/nsp15A1-B | 185 | V185del1 | gTt | g-t | 1 | 5 | All | 0 |
ORF1ab/nsp15A1-B | 185 | V185R | GTT | CGA | 1 | 5 | All | 0 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 2 | 5 | AY.3 | 0.00002 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtA | 2 | 5 | AY.3 | 0.00002 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtG | 1 | 5 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp15A1-B | 185 | V185G | gTt | gGt | 3 | 4 | B.1.1.33 | 0.001263 |
ORF1ab/nsp15A1-B | 185 | V185G | gTT | gGA | 1 | 4 | B.1.1.33 | 0.000421 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtA | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 3 | 4 | B.1.429 | 0.000071 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtA | 1 | 4 | B.1.429 | 0.000024 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 3 | 3 | AD.2 | 0.000657 |
ORF1ab/nsp15A1-B | 185 | V185C | GTt | TGt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp15A1-B | 185 | V185L | Gtt | Ctt | 2 | 3 | B.1.1.33 | 0.000842 |
ORF1ab/nsp15A1-B | 185 | V185R | GTt | CGt | 2 | 3 | B.1.1.33 | 0.000842 |
ORF1ab/nsp15A1-B | 185 | V185R | GTT | CGA | 1 | 3 | B.1.1.33 | 0.000421 |
ORF1ab/nsp15A1-B | 185 | V185L | GtT | CtA | 1 | 3 | B.1.1.33 | 0.000421 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp15A1-B | 185 | V185L | Gtt | Ctt | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp15A1-B | 185 | V185del1 | GtT | -tG | 2 | 2 | 0.111111 | |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 2 | 2 | A | 0.000774 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 2 | AY.33 | 0.000067 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtG | 1 | 2 | AY.33 | 0.000067 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp15A1-B | 185 | V185G | gTt | gGt | 1 | 2 | AY.46.6 | 0.000072 |
ORF1ab/nsp15A1-B | 185 | V185I | GtT | AtA | 1 | 2 | AY.46.6 | 0.000072 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 1 | 2 | AY.46.6 | 0.000072 |
ORF1ab/nsp15A1-B | 185 | V185G | gTT | gGA | 1 | 2 | AY.46.6 | 0.000072 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 2 | AY.98 | 0.000079 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtA | 1 | 2 | AY.98 | 0.000079 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 185 | V185G | gTt | gGt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 185 | V185G | gTt | gGt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtA | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtA | 2 | 2 | B.1.350 | 0.005865 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 2 | 2 | B.1.40 | 0.039216 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 2 | 2 | C.18 | 0.005181 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp15A1-B | 185 | V185P | GTT | CCG | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 185 | V185S | GTt | AGt | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 185 | V185del2 | gTT | g-- | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp15A1-B | 185 | V185D | gTt | gAt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtG | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtA | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp15A1-B | 185 | V185L | GtT | CtA | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp15A1-B | 185 | V185A | gTT | gCA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 185 | V185del2 | gTT | g-- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp15A1-B | 185 | V185R | GTT | AGA | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtA | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp15A1-B | 185 | V185S | GTt | AGt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp15A1-B | 185 | V185C | GTt | TGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 185 | V185del1 | Gtt | -tt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 185 | V185D | gTt | gAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 185 | V185C | GTt | TGt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 185 | V185D | gTt | gAt | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 1 | 1 | B.1.1.172 | 0.018182 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp15A1-B | 185 | V185L | Gtt | Ctt | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 1 | 1 | B.1.1.254 | 0.011236 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtA | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp15A1-B | 185 | V185G | gTt | gGt | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp15A1-B | 185 | V185L | Gtt | Ctt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp15A1-B | 185 | V185G | gTt | gGt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp15A1-B | 185 | V185D | gTt | gAt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 185 | V185G | gTt | gGt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 185 | V185C | GTt | TGt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 185 | V185G | gTt | gGt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtA | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp15A1-B | 185 | V185G | gTt | gGt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 185 | V185G | gTt | gGt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp15A1-B | 185 | V185D | gTt | gAt | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp15A1-B | 185 | V185A | gTT | gCA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 185 | V185del1 | Gtt | -tt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 185 | V185del1 | gTt | g-t | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp15A1-B | 185 | V185G | gTt | gGt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtA | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 185 | V185R | GTT | AGA | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp15A1-B | 185 | V185D | gTt | gAt | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp15A1-B | 185 | V185G | gTt | gGt | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtA | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 1 | 1 | B.1.585 | 0.027778 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 185 | V185G | gTt | gGt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtG | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp15A1-B | 185 | V185D | gTt | gAt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 185 | V185del | GTT | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp15A1-B | 185 | V185I | Gtt | Att | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtC | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp15A1-B | 185 | V185P | GTT | CCG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp15A1-B | 185 | V185A | gTt | gCt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp15A1-B | 185 | V185L | Gtt | Ctt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp15A1-B | 185 | V185V | gtT | gtG | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp15A1-B | 185 | V185F | Gtt | Ttt | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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