CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 182 | V182V | V6634V | syn | gtT | gtC | 1307 | 1276 | 0.976282 | 20164-20166 |
ORF1ab/nsp15A1-B | 182 | V182V | V6634V | syn | gtT | gtG | 1307 | 20 | 0.0153022 | 20164-20166 |
ORF1ab/nsp15A1-B | 182 | V182V | V6634V | syn | gtT | gtA | 1307 | 11 | 0.00841622 | 20164-20166 |
ORF1ab/nsp15A1-B | 182 | V182F | V6634F | nonsyn | Gtt | Ttt | 187 | 187 | 1 | 20164-20166 |
ORF1ab/nsp15A1-B | 182 | V182I | V6634I | nonsyn | Gtt | Att | 163 | 162 | 0.993865 | 20164-20166 |
ORF1ab/nsp15A1-B | 182 | V182I | V6634I | nonsyn | GtT | AtC | 163 | 1 | 0.00613497 | 20164-20166 |
ORF1ab/nsp15A1-B | 182 | V182del | V6634del | del | GTT | --- | 77 | 77 | 1 | 20164-20166 |
ORF1ab/nsp15A1-B | 182 | V182A | V6634A | nonsyn | gTt | gCt | 26 | 26 | 1 | 20164-20166 |
ORF1ab/nsp15A1-B | 182 | V182G | V6634G | nonsyn | gTt | gGt | 11 | 11 | 1 | 20164-20166 |
ORF1ab/nsp15A1-B | 182 | V182D | V6634D | nonsyn | gTt | gAt | 9 | 8 | 0.888889 | 20164-20166 |
ORF1ab/nsp15A1-B | 182 | V182D | V6634D | nonsyn | gTT | gAC | 9 | 1 | 0.111111 | 20164-20166 |
ORF1ab/nsp15A1-B | 182 | V182P | V6634P | nonsyn | GTT | CCA | 2 | 2 | 1 | 20164-20166 |
ORF1ab/nsp15A1-B | 182 | V182M | V6634M | nonsyn | GtT | AtG | 2 | 2 | 1 | 20164-20166 |
ORF1ab/nsp15A1-B | 182 | V182N | V6634N | nonsyn | GTt | AAt | 2 | 1 | 0.5 | 20164-20166 |
ORF1ab/nsp15A1-B | 182 | V182N | V6634N | nonsyn | GTT | AAC | 2 | 1 | 0.5 | 20164-20166 |
ORF1ab/nsp15A1-B | 182 | V182S | V6634S | nonsyn | GTt | AGt | 2 | 1 | 0.5 | 20164-20166 |
ORF1ab/nsp15A1-B | 182 | V182L | V6634L | nonsyn | Gtt | Ctt | 2 | 1 | 0.5 | 20164-20166 |
ORF1ab/nsp15A1-B | 182 | V182L | V6634L | nonsyn | GtT | TtG | 2 | 1 | 0.5 | 20164-20166 |
ORF1ab/nsp15A1-B | 182 | V182S | V6634S | nonsyn | GTT | TCC | 2 | 1 | 0.5 | 20164-20166 |
ORF1ab/nsp15A1-B | 182 | V182T | V6634T | nonsyn | GTT | ACA | 1 | 1 | 1 | 20164-20166 |
ORF1ab/nsp15A1-B | 182 | V182X | V6634X | nonsyn | GTT | TGA | 1 | 1 | 1 | 20164-20166 |
ORF1ab/nsp15A1-B | 182 | V182C | V6634C | nonsyn | GTt | TGt | 1 | 1 | 1 | 20164-20166 |
ORF1ab/nsp15A1-B | 182 | V182W | V6634W | nonsyn | GTT | TGG | 1 | 1 | 1 | 20164-20166 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1276 | 1307 | All | 0.000244 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtG | 20 | 1307 | All | 0.000004 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtA | 11 | 1307 | All | 0.000002 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1114 | 1114 | AY.3 | 0.01108 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 187 | 187 | All | 0.000036 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 162 | 163 | All | 0.000031 |
ORF1ab/nsp15A1-B | 182 | V182I | GtT | AtC | 1 | 163 | All | 0 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 91 | 93 | B.1.1.7 | 0.000081 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtA | 1 | 93 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtG | 1 | 93 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 77 | 77 | All | 0.000015 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 59 | 59 | B.1.1.375 | 0.702381 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 34 | 34 | B.1.617.2 | 0.000128 |
ORF1ab/nsp15A1-B | 182 | V182A | gTt | gCt | 26 | 26 | All | 0.000005 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 26 | 26 | B.1.1.7 | 0.000023 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 22 | 22 | B.1.2 | 0.000194 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtG | 13 | 13 | B.1.429 | 0.000306 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 12 | 12 | AY.43 | 0.000053 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp15A1-B | 182 | V182G | gTt | gGt | 11 | 11 | All | 0.000002 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 11 | 11 | AY.29 | 0.000174 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 11 | 11 | B.1.2 | 0.000097 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp15A1-B | 182 | V182D | gTt | gAt | 8 | 9 | All | 0.000002 |
ORF1ab/nsp15A1-B | 182 | V182D | gTT | gAC | 1 | 9 | All | 0 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 9 | 9 | B.1.350 | 0.026393 |
ORF1ab/nsp15A1-B | 182 | V182A | gTt | gCt | 8 | 8 | B.1.637 | 0.000585 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 6 | 7 | AY.46.6 | 0.000433 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtG | 1 | 7 | AY.46.6 | 0.000072 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 6 | 6 | 0.333333 | |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 6 | 6 | AY.115 | 0.03125 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtA | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 3 | 4 | B.1.1 | 0.000054 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtA | 1 | 4 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 3 | 3 | AY.91 | 0.002191 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp15A1-B | 182 | V182A | gTt | gCt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp15A1-B | 182 | V182M | GtT | AtG | 2 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 182 | V182P | GTT | CCA | 2 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 182 | V182S | GTT | TCC | 1 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 182 | V182L | GtT | TtG | 1 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 182 | V182N | GTT | AAC | 1 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 182 | V182L | Gtt | Ctt | 1 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 182 | V182S | GTt | AGt | 1 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 182 | V182N | GTt | AAt | 1 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtA | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp15A1-B | 182 | V182G | gTt | gGt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtG | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 182 | V182G | gTt | gGt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp15A1-B | 182 | V182D | gTt | gAt | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 182 | V182D | gTT | gAC | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 182 | V182I | GtT | AtC | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 182 | V182N | GTT | AAC | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 182 | V182N | GTt | AAt | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtG | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp15A1-B | 182 | V182P | GTT | CCA | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp15A1-B | 182 | V182A | gTt | gCt | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 2 | 2 | C.39 | 0.037736 |
ORF1ab/nsp15A1-B | 182 | V182A | gTt | gCt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1 | 1 | A | 0.000387 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp15A1-B | 182 | V182W | GTT | TGG | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 182 | V182T | GTT | ACA | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 182 | V182C | GTt | TGt | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 182 | V182X | GTT | TGA | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp15A1-B | 182 | V182D | gTt | gAt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtG | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp15A1-B | 182 | V182D | gTt | gAt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 182 | V182A | gTt | gCt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 182 | V182A | gTt | gCt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 182 | V182M | GtT | AtG | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp15A1-B | 182 | V182A | gTt | gCt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp15A1-B | 182 | V182L | GtT | TtG | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp15A1-B | 182 | V182W | GTT | TGG | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp15A1-B | 182 | V182G | gTt | gGt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 1 | 1 | B | 0.000128 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 182 | V182A | gTt | gCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 182 | V182D | gTt | gAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 182 | V182A | gTt | gCt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 182 | V182D | gTt | gAt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtA | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp15A1-B | 182 | V182G | gTt | gGt | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp15A1-B | 182 | V182G | gTt | gGt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp15A1-B | 182 | V182A | gTt | gCt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp15A1-B | 182 | V182S | GTT | TCC | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 182 | V182G | gTt | gGt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 182 | V182X | GTT | TGA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 182 | V182T | GTT | ACA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 182 | V182S | GTt | AGt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 182 | V182G | gTt | gGt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 182 | V182D | gTt | gAt | 1 | 1 | B.1.160.10 | 0.008065 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp15A1-B | 182 | V182G | gTt | gGt | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp15A1-B | 182 | V182V | gtT | gtA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 182 | V182L | Gtt | Ctt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 182 | V182M | GtT | AtG | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp15A1-B | 182 | V182G | gTt | gGt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp15A1-B | 182 | V182A | gTt | gCt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp15A1-B | 182 | V182D | gTt | gAt | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp15A1-B | 182 | V182A | gTt | gCt | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 1 | 1 | B.1.585 | 0.027778 |
ORF1ab/nsp15A1-B | 182 | V182A | gTt | gCt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 182 | V182A | gTt | gCt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 182 | V182D | gTt | gAt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 182 | V182del | GTT | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp15A1-B | 182 | V182C | GTt | TGt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp15A1-B | 182 | V182F | Gtt | Ttt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp15A1-B | 182 | V182I | Gtt | Att | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp15A1-B | 182 | V182A | gTt | gCt | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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