CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 168

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B168I168II6620IsynatTatA7265290.7286520122-20124
ORF1ab/nsp15A1-B168I168II6620IsynatTatC7261970.2713520122-20124
ORF1ab/nsp15A1-B168I168delI6620deldelATT---7171120122-20124
ORF1ab/nsp15A1-B168I168TI6620TnonsynaTtaCt6969120122-20124
ORF1ab/nsp15A1-B168I168VI6620VnonsynAttGtt6565120122-20124
ORF1ab/nsp15A1-B168I168SI6620SnonsynaTtaGt6161120122-20124
ORF1ab/nsp15A1-B168I168LI6620LnonsynAttCtt41400.9756120122-20124
ORF1ab/nsp15A1-B168I168LI6620LnonsynAtTCtA4110.024390220122-20124
ORF1ab/nsp15A1-B168I168MI6620MnonsynatTatG1515120122-20124
ORF1ab/nsp15A1-B168I168FI6620FnonsynAttTtt1212120122-20124
ORF1ab/nsp15A1-B168I168NI6620NnonsynaTtaAt55120122-20124
ORF1ab/nsp15A1-B168I168AI6620AnonsynATtGCt420.520122-20124
ORF1ab/nsp15A1-B168I168del1I6620del1delATT-NN410.2520122-20124
ORF1ab/nsp15A1-B168I168del1I6620del1delaTta-t410.2520122-20124
ORF1ab/nsp15A1-B168I168AI6620AnonsynATTGCG410.2520122-20124
ORF1ab/nsp15A1-B168I168del1I6620del1delAtT-tC410.2520122-20124
ORF1ab/nsp15A1-B168I168del1I6620del1delatTat-410.2520122-20124
ORF1ab/nsp15A1-B168I168AI6620AnonsynATTGCC410.2520122-20124
ORF1ab/nsp15A1-B168I168QI6620QnonsynATTCAA11120122-20124
ORF1ab/nsp15A1-B168I168GI6620GnonsynATtGGt11120122-20124

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B168I168IatTatA529726All0.000101
ORF1ab/nsp15A1-B168I168IatTatC197726All0.000038
ORF1ab/nsp15A1-B168I168IatTatA457457B.1.6270.923232
ORF1ab/nsp15A1-B168I168IatTatC8994B.1.1.70.00008
ORF1ab/nsp15A1-B168I168IatTatA594B.1.1.70.000004
ORF1ab/nsp15A1-B168I168delATT---7171All0.000014
ORF1ab/nsp15A1-B168I168TaTtaCt6969All0.000013
ORF1ab/nsp15A1-B168I168VAttGtt6565All0.000012
ORF1ab/nsp15A1-B168I168SaTtaGt6161All0.000012
ORF1ab/nsp15A1-B168I168LAttCtt4041All0.000008
ORF1ab/nsp15A1-B168I168LAtTCtA141All0
ORF1ab/nsp15A1-B168I168IatTatA3636B.1.160.210.734694
ORF1ab/nsp15A1-B168I168SaTtaGt3131AY.1030.000192
ORF1ab/nsp15A1-B168I168delATT---1818B.1.1.70.000016
ORF1ab/nsp15A1-B168I168IatTatA917B.10.000082
ORF1ab/nsp15A1-B168I168IatTatC817B.10.000073
ORF1ab/nsp15A1-B168I168MatTatG1515All0.000003
ORF1ab/nsp15A1-B168I168IatTatC1214AY.40.000019
ORF1ab/nsp15A1-B168I168IatTatA214AY.40.000003
ORF1ab/nsp15A1-B168I168TaTtaCt1313B.1.1.70.000012
ORF1ab/nsp15A1-B168I168SaTtaGt1313B.1.2210.000923
ORF1ab/nsp15A1-B168I168FAttTtt1212All0.000002
ORF1ab/nsp15A1-B168I168IatTatC1212AY.1130.001709
ORF1ab/nsp15A1-B168I168delATT---1111B.1.20.000097
ORF1ab/nsp15A1-B168I168VAttGtt1010AY.4.20.000217
ORF1ab/nsp15A1-B168I168TaTtaCt88B.1.10.000145
ORF1ab/nsp15A1-B168I168VAttGtt88B.1.1.70.000007
ORF1ab/nsp15A1-B168I168LAttCtt77AY.40.000011
ORF1ab/nsp15A1-B168I168TaTtaCt77AY.440.000043
ORF1ab/nsp15A1-B168I168LAttCtt77B.1.5260.000165
ORF1ab/nsp15A1-B168I168IatTatC77B.1.617.20.000026
ORF1ab/nsp15A1-B168I168LAttCtt66AY.30.00006
ORF1ab/nsp15A1-B168I168IatTatC66AY.440.000037
ORF1ab/nsp15A1-B168I168IatTatA66B.1.10.000109
ORF1ab/nsp15A1-B168I168IatTatC66B.1.1.5190.000238
ORF1ab/nsp15A1-B168I168NaTtaAt55All0.000001
ORF1ab/nsp15A1-B168I168IatTatC55AY.1000.00023
ORF1ab/nsp15A1-B168I168IatTatC45AY.1030.000025
ORF1ab/nsp15A1-B168I168IatTatA15AY.1030.000006
ORF1ab/nsp15A1-B168I168IatTatC45AY.50.000083
ORF1ab/nsp15A1-B168I168IatTatA15AY.50.000021
ORF1ab/nsp15A1-B168I168VAttGtt55B.10.000046
ORF1ab/nsp15A1-B168I168delATT---55B.1.617.20.000019
ORF1ab/nsp15A1-B168I168AATtGCt24All0
ORF1ab/nsp15A1-B168I168del1ATT-NN14All0
ORF1ab/nsp15A1-B168I168AATTGCG14All0
ORF1ab/nsp15A1-B168I168del1aTta-t14All0
ORF1ab/nsp15A1-B168I168del1AtT-tC14All0
ORF1ab/nsp15A1-B168I168del1atTat-14All0
ORF1ab/nsp15A1-B168I168AATTGCC14All0
ORF1ab/nsp15A1-B168I168LAttCtt44AY.1110.000733
ORF1ab/nsp15A1-B168I168VAttGtt44AY.30.00004
ORF1ab/nsp15A1-B168I168VAttGtt44AY.40.000006
ORF1ab/nsp15A1-B168I168IatTatC44AY.430.000018
ORF1ab/nsp15A1-B168I168TaTtaCt44B.10.000037
ORF1ab/nsp15A1-B168I168delATT---44B.1.5260.000094
ORF1ab/nsp15A1-B168I168IatTatC44B.1.6280.001409
ORF1ab/nsp15A1-B168I168VAttGtt33A.210.00831
ORF1ab/nsp15A1-B168I168TaTtaCt33AY.40.000005
ORF1ab/nsp15A1-B168I168AATtGCt23AY.430.000009
ORF1ab/nsp15A1-B168I168AATTGCG13AY.430.000004
ORF1ab/nsp15A1-B168I168TaTtaCt33B0.000383
ORF1ab/nsp15A1-B168I168SaTtaGt33B.1.1.70.000003
ORF1ab/nsp15A1-B168I168LAttCtt23B.1.1.70.000002
ORF1ab/nsp15A1-B168I168LAtTCtA13B.1.1.70.000001
ORF1ab/nsp15A1-B168I168IatTatC33B.1.20.000026
ORF1ab/nsp15A1-B168I168VAttGtt33B.1.617.20.000011
ORF1ab/nsp15A1-B168I168delATT---220.111111
ORF1ab/nsp15A1-B168I168LAttCtt220.111111
ORF1ab/nsp15A1-B168I168FAttTtt220.111111
ORF1ab/nsp15A1-B168I168IatTatC22AY.1200.000074
ORF1ab/nsp15A1-B168I168IatTatA12AY.200.000039
ORF1ab/nsp15A1-B168I168IatTatC12AY.200.000039
ORF1ab/nsp15A1-B168I168TaTtaCt22AY.250.000012
ORF1ab/nsp15A1-B168I168IatTatC12AY.30.00001
ORF1ab/nsp15A1-B168I168IatTatA12AY.30.00001
ORF1ab/nsp15A1-B168I168TaTtaCt22AY.330.000134
ORF1ab/nsp15A1-B168I168TaTtaCt22AY.390.000049
ORF1ab/nsp15A1-B168I168delATT---22AY.430.000009
ORF1ab/nsp15A1-B168I168MatTatG22AY.430.000009
ORF1ab/nsp15A1-B168I168VAttGtt22AY.440.000012
ORF1ab/nsp15A1-B168I168IatTatC22AY.470.000062
ORF1ab/nsp15A1-B168I168LAttCtt22AY.470.000062
ORF1ab/nsp15A1-B168I168IatTatC22AY.5.40.000553
ORF1ab/nsp15A1-B168I168IatTatC22AY.770.002255
ORF1ab/nsp15A1-B168I168IatTatC22AY.98.10.000097
ORF1ab/nsp15A1-B168I168FAttTtt22B.10.000018
ORF1ab/nsp15A1-B168I168VAttGtt22B.1.10.000036
ORF1ab/nsp15A1-B168I168VAttGtt22B.1.1.5190.000079
ORF1ab/nsp15A1-B168I168del1atTat-12B.1.1.70.000001
ORF1ab/nsp15A1-B168I168del1ATT-NN12B.1.1.70.000001
ORF1ab/nsp15A1-B168I168TaTtaCt22B.1.1600.000062
ORF1ab/nsp15A1-B168I168SaTtaGt22B.1.20.000018
ORF1ab/nsp15A1-B168I168MatTatG22B.1.20.000018
ORF1ab/nsp15A1-B168I168TaTtaCt22B.1.2580.000133
ORF1ab/nsp15A1-B168I168delATT---22B.1.2580.000133
ORF1ab/nsp15A1-B168I168TaTtaCt22B.1.3510.000059
ORF1ab/nsp15A1-B168I168MatTatG22B.1.36.90.006431
ORF1ab/nsp15A1-B168I168TaTtaCt22B.1.36.90.006431
ORF1ab/nsp15A1-B168I168VAttGtt22B.1.5260.000047
ORF1ab/nsp15A1-B168I168IatTatC22B.1.621.10.001012
ORF1ab/nsp15A1-B168I168IatTatC12B.1.6370.000073
ORF1ab/nsp15A1-B168I168IatTatA12B.1.6370.000073
ORF1ab/nsp15A1-B168I168TaTtaCt22B.400.000729
ORF1ab/nsp15A1-B168I168LAttCtt22P.10.000032
ORF1ab/nsp15A1-B168I168QATTCAA11All0
ORF1ab/nsp15A1-B168I168GATtGGt11All0
ORF1ab/nsp15A1-B168I168IatTatC11AU.20.002421
ORF1ab/nsp15A1-B168I168IatTatC11AY.1020.000027
ORF1ab/nsp15A1-B168I168VAttGtt11AY.1020.000027
ORF1ab/nsp15A1-B168I168VAttGtt11AY.1030.000006
ORF1ab/nsp15A1-B168I168FAttTtt11AY.1030.000006
ORF1ab/nsp15A1-B168I168TaTtaCt11AY.1030.000006
ORF1ab/nsp15A1-B168I168delATT---11AY.1070.000466
ORF1ab/nsp15A1-B168I168delATT---11AY.1130.000142
ORF1ab/nsp15A1-B168I168LAttCtt11AY.1180.000063
ORF1ab/nsp15A1-B168I168delATT---11AY.1200.000037
ORF1ab/nsp15A1-B168I168VAttGtt11AY.190.00114
ORF1ab/nsp15A1-B168I168FAttTtt11AY.200.000039
ORF1ab/nsp15A1-B168I168VAttGtt11AY.250.000006
ORF1ab/nsp15A1-B168I168SaTtaGt11AY.250.000006
ORF1ab/nsp15A1-B168I168delATT---11AY.250.000006
ORF1ab/nsp15A1-B168I168IatTatC11AY.250.000006
ORF1ab/nsp15A1-B168I168IatTatA11AY.260.000028
ORF1ab/nsp15A1-B168I168SaTtaGt11AY.290.000016
ORF1ab/nsp15A1-B168I168MatTatG11AY.30.00001
ORF1ab/nsp15A1-B168I168delATT---11AY.30.00001
ORF1ab/nsp15A1-B168I168TaTtaCt11AY.3.10.000085
ORF1ab/nsp15A1-B168I168LAttCtt11AY.330.000067
ORF1ab/nsp15A1-B168I168IatTatC11AY.330.000067
ORF1ab/nsp15A1-B168I168IatTatA11AY.380.000499
ORF1ab/nsp15A1-B168I168IatTatC11AY.390.000025
ORF1ab/nsp15A1-B168I168MatTatG11AY.40.000002
ORF1ab/nsp15A1-B168I168delATT---11AY.40.000002
ORF1ab/nsp15A1-B168I168FAttTtt11AY.40.000002
ORF1ab/nsp15A1-B168I168TaTtaCt11AY.4.20.000022
ORF1ab/nsp15A1-B168I168NaTtaAt11AY.4.30.000842
ORF1ab/nsp15A1-B168I168VAttGtt11AY.420.00004
ORF1ab/nsp15A1-B168I168SaTtaGt11AY.420.00004
ORF1ab/nsp15A1-B168I168LAttCtt11AY.430.000004
ORF1ab/nsp15A1-B168I168delATT---11AY.440.000006
ORF1ab/nsp15A1-B168I168FAttTtt11AY.440.000006
ORF1ab/nsp15A1-B168I168IatTatC11AY.450.000122
ORF1ab/nsp15A1-B168I168VAttGtt11AY.46.40.000165
ORF1ab/nsp15A1-B168I168MatTatG11AY.50.000021
ORF1ab/nsp15A1-B168I168delATT---11AY.540.000095
ORF1ab/nsp15A1-B168I168GATtGGt11AY.590.00053
ORF1ab/nsp15A1-B168I168VAttGtt11AY.590.00053
ORF1ab/nsp15A1-B168I168SaTtaGt11AY.590.00053
ORF1ab/nsp15A1-B168I168FAttTtt11AY.7.10.000113
ORF1ab/nsp15A1-B168I168TaTtaCt11AY.710.000475
ORF1ab/nsp15A1-B168I168VAttGtt11AY.740.000116
ORF1ab/nsp15A1-B168I168delATT---11AY.840.000437
ORF1ab/nsp15A1-B168I168delATT---11AY.850.000427
ORF1ab/nsp15A1-B168I168IatTatC11AY.90.000068
ORF1ab/nsp15A1-B168I168SaTtaGt11AY.9.20.000037
ORF1ab/nsp15A1-B168I168SaTtaGt11AY.950.000761
ORF1ab/nsp15A1-B168I168delATT---11AY.990.001049
ORF1ab/nsp15A1-B168I168VAttGtt11AY.99.10.001553
ORF1ab/nsp15A1-B168I168VAttGtt11B0.000128
ORF1ab/nsp15A1-B168I168delATT---11B.10.000009
ORF1ab/nsp15A1-B168I168SaTtaGt11B.10.000009
ORF1ab/nsp15A1-B168I168NaTtaAt11B.10.000009
ORF1ab/nsp15A1-B168I168SaTtaGt11B.1.10.000018
ORF1ab/nsp15A1-B168I168AATTGCC11B.1.10.000018
ORF1ab/nsp15A1-B168I168LAttCtt11B.1.10.000018
ORF1ab/nsp15A1-B168I168delATT---11B.1.10.000018
ORF1ab/nsp15A1-B168I168VAttGtt11B.1.1.10.000327
ORF1ab/nsp15A1-B168I168TaTtaCt11B.1.1.100.001115
ORF1ab/nsp15A1-B168I168delATT---11B.1.1.1700.001247
ORF1ab/nsp15A1-B168I168delATT---11B.1.1.2070.001182
ORF1ab/nsp15A1-B168I168TaTtaCt11B.1.1.2180.007692
ORF1ab/nsp15A1-B168I168delATT---11B.1.1.2310.003096
ORF1ab/nsp15A1-B168I168VAttGtt11B.1.1.3180.000302
ORF1ab/nsp15A1-B168I168IatTatC11B.1.1.3690.000446
ORF1ab/nsp15A1-B168I168FAttTtt11B.1.1.370.000193
ORF1ab/nsp15A1-B168I168IatTatC11B.1.1.3700.012658
ORF1ab/nsp15A1-B168I168LAttCtt11B.1.1.3780.007299
ORF1ab/nsp15A1-B168I168TaTtaCt11B.1.1.5190.00004
ORF1ab/nsp15A1-B168I168IatTatA11B.1.1.5260.003546
ORF1ab/nsp15A1-B168I168FAttTtt11B.1.1.70.000001
ORF1ab/nsp15A1-B168I168MatTatG11B.1.1.70.000001
ORF1ab/nsp15A1-B168I168delATT---11B.1.1.700.000341
ORF1ab/nsp15A1-B168I168TaTtaCt11B.1.1.890.006061
ORF1ab/nsp15A1-B168I168IatTatA11B.1.1120.005181
ORF1ab/nsp15A1-B168I168TaTtaCt11B.1.130.002375
ORF1ab/nsp15A1-B168I168NaTtaAt11B.1.1600.000031
ORF1ab/nsp15A1-B168I168IatTatA11B.1.1600.000031
ORF1ab/nsp15A1-B168I168IatTatC11B.1.1700.00431
ORF1ab/nsp15A1-B168I168IatTatC11B.1.1730.026316
ORF1ab/nsp15A1-B168I168TaTtaCt11B.1.1770.000013
ORF1ab/nsp15A1-B168I168VAttGtt11B.1.1770.000013
ORF1ab/nsp15A1-B168I168LAttCtt11B.1.1770.000013
ORF1ab/nsp15A1-B168I168VAttGtt11B.1.177.150.000631
ORF1ab/nsp15A1-B168I168IatTatA11B.1.177.730.000566
ORF1ab/nsp15A1-B168I168delATT---11B.1.177.730.000566
ORF1ab/nsp15A1-B168I168VAttGtt11B.1.20.000009
ORF1ab/nsp15A1-B168I168TaTtaCt11B.1.2230.002778
ORF1ab/nsp15A1-B168I168NaTtaAt11B.1.2320.000537
ORF1ab/nsp15A1-B168I168VAttGtt11B.1.2430.00007
ORF1ab/nsp15A1-B168I168TaTtaCt11B.1.258.170.000104
ORF1ab/nsp15A1-B168I168SaTtaGt11B.1.3510.00003
ORF1ab/nsp15A1-B168I168NaTtaAt11B.1.3510.00003
ORF1ab/nsp15A1-B168I168VAttGtt11B.1.351.20.000303
ORF1ab/nsp15A1-B168I168FAttTtt11B.1.3560.001727
ORF1ab/nsp15A1-B168I168IatTatA11B.1.3560.001727
ORF1ab/nsp15A1-B168I168SaTtaGt11B.1.360.000146
ORF1ab/nsp15A1-B168I168VAttGtt11B.1.36.10.00114
ORF1ab/nsp15A1-B168I168IatTatC11B.1.3690.000285
ORF1ab/nsp15A1-B168I168LAttCtt11B.1.4090.000781
ORF1ab/nsp15A1-B168I168delATT---11B.1.416.10.001563
ORF1ab/nsp15A1-B168I168delATT---11B.1.4270.00005
ORF1ab/nsp15A1-B168I168delATT---11B.1.4290.000024
ORF1ab/nsp15A1-B168I168MatTatG11B.1.4620.007246
ORF1ab/nsp15A1-B168I168MatTatG11B.1.4970.000315
ORF1ab/nsp15A1-B168I168MatTatG11B.1.4990.00105
ORF1ab/nsp15A1-B168I168delATT---11B.1.5240.001406
ORF1ab/nsp15A1-B168I168IatTatC11B.1.5610.000397
ORF1ab/nsp15A1-B168I168VAttGtt11B.1.5670.003333
ORF1ab/nsp15A1-B168I168IatTatC11B.1.5760.000907
ORF1ab/nsp15A1-B168I168delATT---11B.1.5770.000687
ORF1ab/nsp15A1-B168I168delATT---11B.1.5850.027778
ORF1ab/nsp15A1-B168I168delATT---11B.1.5960.000087
ORF1ab/nsp15A1-B168I168del1aTta-t11B.1.5960.000087
ORF1ab/nsp15A1-B168I168delATT---11B.1.617.10.000129
ORF1ab/nsp15A1-B168I168IatTatA11B.1.617.10.000129
ORF1ab/nsp15A1-B168I168del1AtT-tC11B.1.617.20.000004
ORF1ab/nsp15A1-B168I168TaTtaCt11B.1.617.20.000004
ORF1ab/nsp15A1-B168I168SaTtaGt11B.1.617.20.000004
ORF1ab/nsp15A1-B168I168delATT---11B.1.6200.000946
ORF1ab/nsp15A1-B168I168TaTtaCt11B.1.6210.000089
ORF1ab/nsp15A1-B168I168MatTatG11B.1.6370.000073
ORF1ab/nsp15A1-B168I168IatTatC11B.1.910.002075
ORF1ab/nsp15A1-B168I168TaTtaCt11B.230.002924
ORF1ab/nsp15A1-B168I168LAttCtt11B.400.000364
ORF1ab/nsp15A1-B168I168IatTatC11B.60.00091
ORF1ab/nsp15A1-B168I168SaTtaGt11C.160.00106
ORF1ab/nsp15A1-B168I168IatTatC11C.370.000116
ORF1ab/nsp15A1-B168I168IatTatA11D.20.000075
ORF1ab/nsp15A1-B168I168QATTCAA11P.10.000016
ORF1ab/nsp15A1-B168I168MatTatG11P.1.10.000318
ORF1ab/nsp15A1-B168I168IatTatC11Q.10.000126
ORF1ab/nsp15A1-B168I168VAttGtt11R.10.00009