CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 166 | T166I | T6618I | nonsyn | aCa | aTa | 1071 | 1068 | 0.997199 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166I | T6618I | nonsyn | aCA | aTT | 1071 | 2 | 0.00186741 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166I | T6618I | nonsyn | aCA | aTC | 1071 | 1 | 0.000933707 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166T | T6618T | syn | acA | acG | 656 | 625 | 0.952744 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166T | T6618T | syn | acA | acT | 656 | 21 | 0.0320122 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166T | T6618T | syn | acA | acC | 656 | 10 | 0.0152439 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166A | T6618A | nonsyn | Aca | Gca | 190 | 188 | 0.989474 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166A | T6618A | nonsyn | AcA | GcC | 190 | 1 | 0.00526316 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166A | T6618A | nonsyn | AcA | GcG | 190 | 1 | 0.00526316 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166del | T6618del | del | ACA | --- | 76 | 76 | 1 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166P | T6618P | nonsyn | Aca | Cca | 41 | 40 | 0.97561 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166P | T6618P | nonsyn | AcA | CcC | 41 | 1 | 0.0243902 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166S | T6618S | nonsyn | Aca | Tca | 24 | 19 | 0.791667 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166S | T6618S | nonsyn | AcA | TcT | 24 | 3 | 0.125 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166S | T6618S | nonsyn | AcA | TcG | 24 | 2 | 0.0833333 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166K | T6618K | nonsyn | aCa | aAa | 10 | 10 | 1 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166del1 | T6618del1 | del | Aca | -ca | 8 | 5 | 0.625 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166del1 | T6618del1 | del | acA | ac- | 8 | 3 | 0.375 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166R | T6618R | nonsyn | aCa | aGa | 3 | 3 | 1 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166L | T6618L | nonsyn | ACA | TTG | 3 | 2 | 0.666667 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166L | T6618L | nonsyn | ACa | TTa | 3 | 1 | 0.333333 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166Y | T6618Y | nonsyn | ACA | TAT | 2 | 2 | 1 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166M | T6618M | nonsyn | aCA | aTG | 2 | 2 | 1 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166del2 | T6618del2 | del | ACa | --a | 1 | 1 | 1 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166F | T6618F | nonsyn | ACA | TTT | 1 | 1 | 1 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166V | T6618V | nonsyn | ACa | GTa | 1 | 1 | 1 | 20116-20118 |
ORF1ab/nsp15A1-B | 166 | T166N | T6618N | nonsyn | aCA | aAT | 1 | 1 | 1 | 20116-20118 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1068 | 1071 | All | 0.000204 |
ORF1ab/nsp15A1-B | 166 | T166I | aCA | aTT | 2 | 1071 | All | 0 |
ORF1ab/nsp15A1-B | 166 | T166I | aCA | aTC | 1 | 1071 | All | 0 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 625 | 656 | All | 0.00012 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acT | 21 | 656 | All | 0.000004 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acC | 10 | 656 | All | 0.000002 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 521 | 521 | B.1.587 | 0.988615 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 499 | 499 | AY.26 | 0.014127 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 188 | 190 | All | 0.000036 |
ORF1ab/nsp15A1-B | 166 | T166A | AcA | GcC | 1 | 190 | All | 0 |
ORF1ab/nsp15A1-B | 166 | T166A | AcA | GcG | 1 | 190 | All | 0 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 93 | 93 | AY.4 | 0.000145 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 86 | 87 | B.1.1.7 | 0.000077 |
ORF1ab/nsp15A1-B | 166 | T166I | aCA | aTT | 1 | 87 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 82 | 82 | AY.44 | 0.000499 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 76 | 76 | All | 0.000015 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 68 | 68 | B.1.258 | 0.004525 |
ORF1ab/nsp15A1-B | 166 | T166P | Aca | Cca | 40 | 41 | All | 0.000008 |
ORF1ab/nsp15A1-B | 166 | T166P | AcA | CcC | 1 | 41 | All | 0 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 38 | 38 | AY.39 | 0.000939 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 36 | 36 | B.1.160 | 0.001123 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 23 | 28 | B.1.1.7 | 0.000021 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acT | 3 | 28 | B.1.1.7 | 0.000003 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acC | 2 | 28 | B.1.1.7 | 0.000002 |
ORF1ab/nsp15A1-B | 166 | T166S | Aca | Tca | 19 | 24 | All | 0.000004 |
ORF1ab/nsp15A1-B | 166 | T166S | AcA | TcT | 3 | 24 | All | 0.000001 |
ORF1ab/nsp15A1-B | 166 | T166S | AcA | TcG | 2 | 24 | All | 0 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 24 | 24 | AY.4 | 0.000037 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 22 | 22 | C.16 | 0.02333 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 20 | 20 | B.1.1.7 | 0.000018 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 18 | 18 | AY.26 | 0.00051 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 17 | 18 | AY.4 | 0.000026 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acT | 1 | 18 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 17 | 17 | B.1.617.2 | 0.000064 |
ORF1ab/nsp15A1-B | 166 | T166S | Aca | Tca | 15 | 16 | B.1.1.7 | 0.000013 |
ORF1ab/nsp15A1-B | 166 | T166S | AcA | TcT | 1 | 16 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 15 | 15 | B.1 | 0.000137 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 15 | 15 | R.1 | 0.00135 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 12 | 14 | B.1.617.2 | 0.000045 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acC | 2 | 14 | B.1.617.2 | 0.000008 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 13 | 13 | AY.43 | 0.000058 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 12 | 12 | B.1.160.29 | 0.050633 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 12 | 12 | B.1.2 | 0.000106 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 10 | 11 | B.1 | 0.000092 |
ORF1ab/nsp15A1-B | 166 | T166A | AcA | GcG | 1 | 11 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 166 | T166K | aCa | aAa | 10 | 10 | All | 0.000002 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 9 | 10 | AY.44 | 0.000055 |
ORF1ab/nsp15A1-B | 166 | T166I | aCA | aTC | 1 | 10 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp15A1-B | 166 | T166P | Aca | Cca | 9 | 10 | B.1.617.2 | 0.000034 |
ORF1ab/nsp15A1-B | 166 | T166P | AcA | CcC | 1 | 10 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 166 | T166P | Aca | Cca | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp15A1-B | 166 | T166del1 | Aca | -ca | 5 | 8 | All | 0.000001 |
ORF1ab/nsp15A1-B | 166 | T166del1 | acA | ac- | 3 | 8 | All | 0.000001 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 7 | 8 | AY.44 | 0.000043 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acC | 1 | 8 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 7 | 7 | AY.42 | 0.000282 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 4 | 7 | B.1 | 0.000037 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acT | 2 | 7 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acC | 1 | 7 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp15A1-B | 166 | T166P | Aca | Cca | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acT | 3 | 5 | B.1.177 | 0.00004 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 2 | 5 | B.1.177 | 0.000026 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 4 | 5 | P.1 | 0.000063 |
ORF1ab/nsp15A1-B | 166 | T166I | aCA | aTT | 1 | 5 | P.1 | 0.000016 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp15A1-B | 166 | T166P | Aca | Cca | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 4 | 4 | C.36.3 | 0.002269 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp15A1-B | 166 | T166R | aCa | aGa | 3 | 3 | All | 0.000001 |
ORF1ab/nsp15A1-B | 166 | T166L | ACA | TTG | 2 | 3 | All | 0 |
ORF1ab/nsp15A1-B | 166 | T166L | ACa | TTa | 1 | 3 | All | 0 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 2 | 3 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acT | 1 | 3 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 3 | 3 | B.1.1.27 | 0.016949 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp15A1-B | 166 | T166P | Aca | Cca | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp15A1-B | 166 | T166S | AcA | TcT | 2 | 2 | 0.111111 | |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp15A1-B | 166 | T166Y | ACA | TAT | 2 | 2 | 0.111111 | |
ORF1ab/nsp15A1-B | 166 | T166Y | ACA | TAT | 2 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 166 | T166M | aCA | aTG | 2 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 1 | 2 | AY.113 | 0.000142 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acT | 1 | 2 | AY.113 | 0.000142 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acT | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 166 | T166S | AcA | TcG | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 1 | 2 | AY.47 | 0.000031 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acT | 1 | 2 | AY.47 | 0.000031 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 2 | 2 | AY.81 | 0.003984 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acT | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acC | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp15A1-B | 166 | T166K | aCa | aAa | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 2 | 2 | B.1.619.1 | 0.001283 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acC | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp15A1-B | 166 | T166S | Aca | Tca | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp15A1-B | 166 | T166F | ACA | TTT | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 166 | T166V | ACa | GTa | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 166 | T166N | aCA | aAT | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 166 | T166del2 | ACa | --a | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 166 | T166R | aCa | aGa | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acT | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp15A1-B | 166 | T166P | Aca | Cca | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp15A1-B | 166 | T166K | aCa | aAa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp15A1-B | 166 | T166del1 | acA | ac- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp15A1-B | 166 | T166P | Aca | Cca | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp15A1-B | 166 | T166M | aCA | aTG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 166 | T166P | Aca | Cca | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 166 | T166S | Aca | Tca | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 166 | T166L | ACA | TTG | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 166 | T166del2 | ACa | --a | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp15A1-B | 166 | T166K | aCa | aAa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 166 | T166del1 | Aca | -ca | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 166 | T166P | Aca | Cca | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 166 | T166P | Aca | Cca | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acC | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp15A1-B | 166 | T166P | Aca | Cca | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp15A1-B | 166 | T166K | aCa | aAa | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp15A1-B | 166 | T166L | ACA | TTG | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp15A1-B | 166 | T166P | Aca | Cca | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 1 | 1 | B | 0.000128 |
ORF1ab/nsp15A1-B | 166 | T166K | aCa | aAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 166 | T166del1 | Aca | -ca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 166 | T166A | AcA | GcC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp15A1-B | 166 | T166K | aCa | aAa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp15A1-B | 166 | T166M | aCA | aTG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 166 | T166V | ACa | GTa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 166 | T166F | ACA | TTT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 166 | T166del1 | Aca | -ca | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 166 | T166R | aCa | aGa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 166 | T166L | ACa | TTa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 166 | T166P | Aca | Cca | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | B.1.165 | 0.011905 |
ORF1ab/nsp15A1-B | 166 | T166K | aCa | aAa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp15A1-B | 166 | T166del1 | Aca | -ca | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 166 | T166K | aCa | aAa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp15A1-B | 166 | T166del1 | acA | ac- | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 1 | 1 | B.1.267 | 0.018519 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp15A1-B | 166 | T166N | aCA | aAT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp15A1-B | 166 | T166K | aCa | aAa | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp15A1-B | 166 | T166P | Aca | Cca | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | B.1.585 | 0.027778 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 166 | T166A | Aca | Gca | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp15A1-B | 166 | T166del1 | acA | ac- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp15A1-B | 166 | T166del1 | Aca | -ca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp15A1-B | 166 | T166S | Aca | Tca | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp15A1-B | 166 | T166del | ACA | --- | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 1 | 1 | C.6 | 0.037037 |
ORF1ab/nsp15A1-B | 166 | T166R | aCa | aGa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp15A1-B | 166 | T166S | Aca | Tca | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp15A1-B | 166 | T166T | acA | acG | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp15A1-B | 166 | T166I | aCa | aTa | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp15A1-B | 166 | T166P | Aca | Cca | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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