CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 155

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp15A1-B	155	V155V	V6607V	syn	gtA	gtG	2263	2158	0.953601	20083-20085
ORF1ab/nsp15A1-B	155	V155V	V6607V	syn	gtA	gtT	2263	92	0.040654	20083-20085
ORF1ab/nsp15A1-B	155	V155V	V6607V	syn	gtA	gtC	2263	13	0.00574459	20083-20085
ORF1ab/nsp15A1-B	155	V155I	V6607I	nonsyn	Gta	Ata	669	668	0.998505	20083-20085
ORF1ab/nsp15A1-B	155	V155I	V6607I	nonsyn	GtA	AtT	669	1	0.00149477	20083-20085
ORF1ab/nsp15A1-B	155	V155A	V6607A	nonsyn	gTa	gCa	103	97	0.941748	20083-20085
ORF1ab/nsp15A1-B	155	V155A	V6607A	nonsyn	gTA	gCC	103	4	0.038835	20083-20085
ORF1ab/nsp15A1-B	155	V155A	V6607A	nonsyn	gTA	gCG	103	2	0.0194175	20083-20085
ORF1ab/nsp15A1-B	155	V155del	V6607del	del	GTA	---	101	101	1	20083-20085
ORF1ab/nsp15A1-B	155	V155L	V6607L	nonsyn	Gta	Tta	65	56	0.861538	20083-20085
ORF1ab/nsp15A1-B	155	V155L	V6607L	nonsyn	Gta	Cta	65	6	0.0923077	20083-20085
ORF1ab/nsp15A1-B	155	V155L	V6607L	nonsyn	GtA	TtG	65	3	0.0461538	20083-20085
ORF1ab/nsp15A1-B	155	V155E	V6607E	nonsyn	gTa	gAa	13	10	0.769231	20083-20085
ORF1ab/nsp15A1-B	155	V155E	V6607E	nonsyn	gTA	gAG	13	3	0.230769	20083-20085
ORF1ab/nsp15A1-B	155	V155del1	V6607del1	del	gtA	gt-	7	5	0.714286	20083-20085
ORF1ab/nsp15A1-B	155	V155del1	V6607del1	del	GtA	At-	7	1	0.142857	20083-20085
ORF1ab/nsp15A1-B	155	V155del1	V6607del1	del	GTA	-NN	7	1	0.142857	20083-20085
ORF1ab/nsp15A1-B	155	V155del2	V6607del2	del	gTA	g--	6	5	0.833333	20083-20085
ORF1ab/nsp15A1-B	155	V155G	V6607G	nonsyn	gTa	gGa	6	4	0.666667	20083-20085
ORF1ab/nsp15A1-B	155	V155P	V6607P	nonsyn	GTA	CCG	6	3	0.5	20083-20085
ORF1ab/nsp15A1-B	155	V155P	V6607P	nonsyn	GTA	CCC	6	2	0.333333	20083-20085
ORF1ab/nsp15A1-B	155	V155G	V6607G	nonsyn	gTA	gGG	6	1	0.166667	20083-20085
ORF1ab/nsp15A1-B	155	V155G	V6607G	nonsyn	gTA	gGC	6	1	0.166667	20083-20085
ORF1ab/nsp15A1-B	155	V155P	V6607P	nonsyn	GTa	CCa	6	1	0.166667	20083-20085
ORF1ab/nsp15A1-B	155	V155del2	V6607del2	del	GTa	--a	6	1	0.166667	20083-20085
ORF1ab/nsp15A1-B	155	V155R	V6607R	nonsyn	GTA	CGG	4	1	0.25	20083-20085
ORF1ab/nsp15A1-B	155	V155R	V6607R	nonsyn	GTA	AGG	4	1	0.25	20083-20085
ORF1ab/nsp15A1-B	155	V155R	V6607R	nonsyn	GTa	AGa	4	1	0.25	20083-20085
ORF1ab/nsp15A1-B	155	V155R	V6607R	nonsyn	GTa	CGa	4	1	0.25	20083-20085
ORF1ab/nsp15A1-B	155	V155D	V6607D	nonsyn	gTA	gAC	3	3	1	20083-20085
ORF1ab/nsp15A1-B	155	V155X	V6607X	nonsyn	GTa	TAa	3	1	0.333333	20083-20085
ORF1ab/nsp15A1-B	155	V155X	V6607X	nonsyn	GTa	TGa	3	1	0.333333	20083-20085
ORF1ab/nsp15A1-B	155	V155X	V6607X	nonsyn	GTA	TAG	3	1	0.333333	20083-20085
ORF1ab/nsp15A1-B	155	V155H	V6607H	nonsyn	GTA	CAC	2	2	1	20083-20085
ORF1ab/nsp15A1-B	155	V155Q	V6607Q	nonsyn	GTA	CAG	2	2	1	20083-20085
ORF1ab/nsp15A1-B	155	V155T	V6607T	nonsyn	GTA	ACG	2	1	0.5	20083-20085
ORF1ab/nsp15A1-B	155	V155T	V6607T	nonsyn	GTa	ACa	2	1	0.5	20083-20085
ORF1ab/nsp15A1-B	155	V155C	V6607C	nonsyn	GTA	TGC	1	1	1	20083-20085
ORF1ab/nsp15A1-B	155	V155F	V6607F	nonsyn	GtA	TtC	1	1	1	20083-20085
ORF1ab/nsp15A1-B	155	V155W	V6607W	nonsyn	GTA	TGG	1	1	1	20083-20085
ORF1ab/nsp15A1-B	155	V155Y	V6607Y	nonsyn	GTA	TAC	1	1	1	20083-20085

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	2158	2263	All	0.000413
ORF1ab/nsp15A1-B	155	V155V	gtA	gtT	92	2263	All	0.000018
ORF1ab/nsp15A1-B	155	V155V	gtA	gtC	13	2263	All	0.000002
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1761	1761	AY.62	0.76732
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	668	669	All	0.000128
ORF1ab/nsp15A1-B	155	V155I	GtA	AtT	1	669	All	0
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	188	190	B.1.617.2	0.000708
ORF1ab/nsp15A1-B	155	V155V	gtA	gtT	2	190	B.1.617.2	0.000008
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	179	179	B.1.617.2	0.000674
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	97	103	All	0.000019
ORF1ab/nsp15A1-B	155	V155A	gTA	gCC	4	103	All	0.000001
ORF1ab/nsp15A1-B	155	V155A	gTA	gCG	2	103	All	0
ORF1ab/nsp15A1-B	155	V155del	GTA	---	101	101	All	0.000019
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	100	100	AY.4	0.000156
ORF1ab/nsp15A1-B	155	V155V	gtA	gtT	53	84	AY.4	0.000082
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	30	84	AY.4	0.000047
ORF1ab/nsp15A1-B	155	V155V	gtA	gtC	1	84	AY.4	0.000002
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	80	80	B.1.258.11	0.031708
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	70	70	AY.53	0.020127
ORF1ab/nsp15A1-B	155	V155L	Gta	Tta	56	65	All	0.000011
ORF1ab/nsp15A1-B	155	V155L	Gta	Cta	6	65	All	0.000001
ORF1ab/nsp15A1-B	155	V155L	GtA	TtG	3	65	All	0.000001
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	48	48	B.1.1.7	0.000043
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	18	36	B.1.1.7	0.000016
ORF1ab/nsp15A1-B	155	V155V	gtA	gtT	17	36	B.1.1.7	0.000015
ORF1ab/nsp15A1-B	155	V155V	gtA	gtC	1	36	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	155	V155del	GTA	---	27	27	B.1.1.7	0.000024
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	25	25	AY.9.1	0.002093
ORF1ab/nsp15A1-B	155	V155L	Gta	Tta	19	21	B.1.1.7	0.000017
ORF1ab/nsp15A1-B	155	V155L	Gta	Cta	2	21	B.1.1.7	0.000002
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	20	20	B.1.1.7	0.000018
ORF1ab/nsp15A1-B	155	V155del	GTA	---	18	18	B.1.2	0.000158
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	17	17	AY.25	0.000102
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	17	17	AY.44	0.000103
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	17	17	B.1.234	0.002243
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	14	14	AY.16	0.005315
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	14	14	B.1.177	0.000184
ORF1ab/nsp15A1-B	155	V155E	gTa	gAa	10	13	All	0.000002
ORF1ab/nsp15A1-B	155	V155E	gTA	gAG	3	13	All	0.000001
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	13	13	AY.6	0.000535
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	12	12	AY.3	0.000119
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	10	10	AY.39	0.000247
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	10	10	AY.43	0.000044
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	10	10	AY.5	0.000206
ORF1ab/nsp15A1-B	155	V155L	Gta	Tta	10	10	B.1.177	0.000132
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	8	10	B.1.2	0.00007
ORF1ab/nsp15A1-B	155	V155V	gtA	gtC	1	10	B.1.2	0.000009
ORF1ab/nsp15A1-B	155	V155V	gtA	gtT	1	10	B.1.2	0.000009
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	9	9	B.1.628	0.003171
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	8	8	B.1.177.73	0.00453
ORF1ab/nsp15A1-B	155	V155del1	gtA	gt-	5	7	All	0.000001
ORF1ab/nsp15A1-B	155	V155del1	GtA	At-	1	7	All	0
ORF1ab/nsp15A1-B	155	V155del1	GTA	-NN	1	7	All	0
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	7	7	AY.103	0.000043
ORF1ab/nsp15A1-B	155	V155V	gtA	gtT	7	7	AY.4.2	0.000152
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	7	7	AY.44	0.000043
ORF1ab/nsp15A1-B	155	V155del	GTA	---	7	7	B.1.617.2	0.000026
ORF1ab/nsp15A1-B	155	V155del	GTA	---	6	6		0.333333
ORF1ab/nsp15A1-B	155	V155del2	gTA	g--	5	6	All	0.000001
ORF1ab/nsp15A1-B	155	V155G	gTa	gGa	4	6	All	0.000001
ORF1ab/nsp15A1-B	155	V155P	GTA	CCG	3	6	All	0.000001
ORF1ab/nsp15A1-B	155	V155P	GTA	CCC	2	6	All	0
ORF1ab/nsp15A1-B	155	V155del2	GTa	--a	1	6	All	0
ORF1ab/nsp15A1-B	155	V155G	gTA	gGC	1	6	All	0
ORF1ab/nsp15A1-B	155	V155G	gTA	gGG	1	6	All	0
ORF1ab/nsp15A1-B	155	V155P	GTa	CCa	1	6	All	0
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	5	6	AY.25	0.00003
ORF1ab/nsp15A1-B	155	V155I	GtA	AtT	1	6	AY.25	0.000006
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	6	6	AY.3.1	0.000512
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	6	6	B.1.525	0.000679
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	6	6	B.1.617.2	0.000023
ORF1ab/nsp15A1-B	155	V155E	gTa	gAa	6	6	P.1	0.000095
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	6	6	P.1.17	0.000971
ORF1ab/nsp15A1-B	155	V155V	gtA	gtC	4	5	AY.23	0.000279
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	5	AY.23	0.00007
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	5	5	AY.5	0.000103
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	5	5	AY.71	0.002375
ORF1ab/nsp15A1-B	155	V155R	GTa	CGa	1	4	All	0
ORF1ab/nsp15A1-B	155	V155R	GTA	CGG	1	4	All	0
ORF1ab/nsp15A1-B	155	V155R	GTa	AGa	1	4	All	0
ORF1ab/nsp15A1-B	155	V155R	GTA	AGG	1	4	All	0
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	4	4	AY.114	0.000924
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	4	4	AY.119	0.000141
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	4	4	AY.20	0.000155
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	4	4	AY.4	0.000006
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	4	4	AY.47	0.000124
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	4	4	AY.84	0.00175
ORF1ab/nsp15A1-B	155	V155R	GTA	AGG	1	4	AY.9.2	0.000037
ORF1ab/nsp15A1-B	155	V155R	GTa	AGa	1	4	AY.9.2	0.000037
ORF1ab/nsp15A1-B	155	V155R	GTA	CGG	1	4	AY.9.2	0.000037
ORF1ab/nsp15A1-B	155	V155R	GTa	CGa	1	4	AY.9.2	0.000037
ORF1ab/nsp15A1-B	155	V155L	Gta	Tta	3	4	B.1	0.000027
ORF1ab/nsp15A1-B	155	V155L	Gta	Cta	1	4	B.1	0.000009
ORF1ab/nsp15A1-B	155	V155G	gTa	gGa	2	4	B.1.1	0.000036
ORF1ab/nsp15A1-B	155	V155G	gTA	gGC	1	4	B.1.1	0.000018
ORF1ab/nsp15A1-B	155	V155G	gTA	gGG	1	4	B.1.1	0.000018
ORF1ab/nsp15A1-B	155	V155del	GTA	---	4	4	B.1.526	0.000094
ORF1ab/nsp15A1-B	155	V155D	gTA	gAC	3	3	All	0.000001
ORF1ab/nsp15A1-B	155	V155X	GTa	TAa	1	3	All	0
ORF1ab/nsp15A1-B	155	V155X	GTA	TAG	1	3	All	0
ORF1ab/nsp15A1-B	155	V155X	GTa	TGa	1	3	All	0
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	3	3	AY.102	0.00008
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	3	3	AY.103	0.000019
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	3	3	AY.25	0.000018
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	3	3	AY.26	0.000085
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	3	3	AY.3	0.00003
ORF1ab/nsp15A1-B	155	V155V	gtA	gtT	2	3	AY.34	0.000194
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	3	AY.34	0.000097
ORF1ab/nsp15A1-B	155	V155L	Gta	Cta	2	3	AY.4	0.000003
ORF1ab/nsp15A1-B	155	V155L	Gta	Tta	1	3	AY.4	0.000002
ORF1ab/nsp15A1-B	155	V155del	GTA	---	3	3	AY.43	0.000013
ORF1ab/nsp15A1-B	155	V155del1	gtA	gt-	2	3	AY.44	0.000012
ORF1ab/nsp15A1-B	155	V155del1	GtA	At-	1	3	AY.44	0.000006
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	3	3	AY.9.2	0.00011
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	3	3	AY.98	0.000237
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	3	3	B.1	0.000027
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	2	3	B.1	0.000018
ORF1ab/nsp15A1-B	155	V155V	gtA	gtT	1	3	B.1	0.000009
ORF1ab/nsp15A1-B	155	V155L	Gta	Tta	2	3	B.1.1	0.000036
ORF1ab/nsp15A1-B	155	V155E	gTa	gAa	2	3	B.1.1	0.000036
ORF1ab/nsp15A1-B	155	V155E	gTA	gAG	1	3	B.1.1	0.000018
ORF1ab/nsp15A1-B	155	V155V	gtA	gtT	1	3	B.1.1	0.000018
ORF1ab/nsp15A1-B	155	V155X	GTA	TAG	1	3	B.1.1	0.000018
ORF1ab/nsp15A1-B	155	V155L	GtA	TtG	1	3	B.1.1	0.000018
ORF1ab/nsp15A1-B	155	V155V	gtA	gtC	1	3	B.1.1	0.000018
ORF1ab/nsp15A1-B	155	V155X	GTa	TAa	1	3	B.1.1	0.000018
ORF1ab/nsp15A1-B	155	V155X	GTa	TGa	1	3	B.1.1	0.000018
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	3	B.1.1	0.000018
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	3	3	B.1.1.28	0.000934
ORF1ab/nsp15A1-B	155	V155L	Gta	Tta	3	3	B.1.2	0.000026
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	3	3	B.1.221	0.000213
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	3	3	B.1.429	0.000071
ORF1ab/nsp15A1-B	155	V155V	gtA	gtC	3	3	B.1.526	0.000071
ORF1ab/nsp15A1-B	155	V155L	Gta	Tta	2	3	B.1.617.2	0.000008
ORF1ab/nsp15A1-B	155	V155L	GtA	TtG	1	3	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	155	V155L	Gta	Tta	3	3	D.2	0.000225
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	2	2	A	0.000774
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	2	2	AE.8	0.000978
ORF1ab/nsp15A1-B	155	V155Q	GTA	CAG	2	2	All	0
ORF1ab/nsp15A1-B	155	V155H	GTA	CAC	2	2	All	0
ORF1ab/nsp15A1-B	155	V155T	GTA	ACG	1	2	All	0
ORF1ab/nsp15A1-B	155	V155T	GTa	ACa	1	2	All	0
ORF1ab/nsp15A1-B	155	V155del	GTA	---	2	2	AY.107	0.000932
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	2	2	AY.113	0.000285
ORF1ab/nsp15A1-B	155	V155del	GTA	---	2	2	AY.120	0.000074
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	2	2	AY.37	0.000632
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	2	2	AY.38	0.000999
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	2	2	AY.39	0.000049
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	2	2	AY.42	0.00008
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	2	2	AY.43	0.000009
ORF1ab/nsp15A1-B	155	V155P	GTA	CCG	1	2	AY.43	0.000004
ORF1ab/nsp15A1-B	155	V155A	gTA	gCG	1	2	AY.43	0.000004
ORF1ab/nsp15A1-B	155	V155A	gTA	gCC	1	2	AY.43	0.000004
ORF1ab/nsp15A1-B	155	V155P	GTA	CCC	1	2	AY.43	0.000004
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	1	2	AY.44	0.000006
ORF1ab/nsp15A1-B	155	V155A	gTA	gCC	1	2	AY.44	0.000006
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	2	2	AY.45	0.000243
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	2	2	AY.54	0.000191
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	2	2	AY.75.1	0.000361
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	2	2	AY.75.1	0.000361
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	2	2	AY.9	0.000135
ORF1ab/nsp15A1-B	155	V155P	GTa	CCa	1	2	AY.9.2	0.000037
ORF1ab/nsp15A1-B	155	V155T	GTa	ACa	1	2	AY.9.2	0.000037
ORF1ab/nsp15A1-B	155	V155P	GTA	CCG	1	2	AY.9.2	0.000037
ORF1ab/nsp15A1-B	155	V155T	GTA	ACG	1	2	AY.9.2	0.000037
ORF1ab/nsp15A1-B	155	V155V	gtA	gtT	2	2	AY.98.1	0.000097
ORF1ab/nsp15A1-B	155	V155A	gTA	gCC	1	2	AY.99	0.001049
ORF1ab/nsp15A1-B	155	V155A	gTA	gCG	1	2	AY.99	0.001049
ORF1ab/nsp15A1-B	155	V155P	GTA	CCG	1	2	AY.99	0.001049
ORF1ab/nsp15A1-B	155	V155P	GTA	CCC	1	2	AY.99	0.001049
ORF1ab/nsp15A1-B	155	V155del	GTA	---	2	2	B.1	0.000018
ORF1ab/nsp15A1-B	155	V155del	GTA	---	2	2	B.1.1	0.000036
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	2	2	B.1.1.175	0.153846
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	2	2	B.1.1.434	0.000697
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	2	2	B.1.147	0.001512
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	2	2	B.1.177.21	0.000153
ORF1ab/nsp15A1-B	155	V155V	gtA	gtT	2	2	B.1.177.7	0.00033
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	2	2	B.1.2	0.000018
ORF1ab/nsp15A1-B	155	V155del	GTA	---	2	2	B.1.258	0.000133
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	2	2	B.1.351	0.000059
ORF1ab/nsp15A1-B	155	V155del	GTA	---	2	2	B.1.351	0.000059
ORF1ab/nsp15A1-B	155	V155del	GTA	---	2	2	B.1.429	0.000047
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	2	2	B.1.429	0.000047
ORF1ab/nsp15A1-B	155	V155L	Gta	Tta	2	2	B.1.429	0.000047
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	1	2	B.1.497	0.000315
ORF1ab/nsp15A1-B	155	V155A	gTA	gCC	1	2	B.1.497	0.000315
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	2	2	B.1.544	0.012048
ORF1ab/nsp15A1-B	155	V155G	gTa	gGa	2	2	B.1.617.2	0.000008
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	2	2	C.14	0.008658
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	2	2	C.36	0.001821
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	2	2	P.1	0.000032
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	2	2	P.1	0.000032
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	1	1	A.2.5.2	0.001572
ORF1ab/nsp15A1-B	155	V155C	GTA	TGC	1	1	All	0
ORF1ab/nsp15A1-B	155	V155F	GtA	TtC	1	1	All	0
ORF1ab/nsp15A1-B	155	V155W	GTA	TGG	1	1	All	0
ORF1ab/nsp15A1-B	155	V155Y	GTA	TAC	1	1	All	0
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	AY.100	0.000046
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	AY.100	0.000046
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	1	1	AY.102	0.000027
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	AY.102	0.000027
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	AY.105	0.000643
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	AY.109	0.00074
ORF1ab/nsp15A1-B	155	V155del	GTA	---	1	1	AY.113	0.000142
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	AY.114	0.000231
ORF1ab/nsp15A1-B	155	V155del	GTA	---	1	1	AY.118	0.000063
ORF1ab/nsp15A1-B	155	V155del1	gtA	gt-	1	1	AY.120	0.000037
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	AY.120.1	0.000321
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	AY.120.1	0.000321
ORF1ab/nsp15A1-B	155	V155del	GTA	---	1	1	AY.121	0.000135
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	AY.14	0.000088
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	1	1	AY.2	0.000356
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	AY.20	0.000039
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	1	1	AY.24	0.000431
ORF1ab/nsp15A1-B	155	V155del	GTA	---	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	AY.26	0.000028
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	1	1	AY.26	0.000028
ORF1ab/nsp15A1-B	155	V155L	Gta	Tta	1	1	AY.26	0.000028
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	1	1	AY.29.1	0.000221
ORF1ab/nsp15A1-B	155	V155del	GTA	---	1	1	AY.3	0.00001
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	AY.32	0.000532
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	AY.33	0.000067
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	AY.34.1	0.00051
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	AY.39.1	0.00004
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	AY.39.1	0.00004
ORF1ab/nsp15A1-B	155	V155del	GTA	---	1	1	AY.4	0.000002
ORF1ab/nsp15A1-B	155	V155del2	gTA	g--	1	1	AY.4	0.000002
ORF1ab/nsp15A1-B	155	V155E	gTa	gAa	1	1	AY.4.3	0.000842
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	AY.4.5	0.000107
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	AY.42	0.00004
ORF1ab/nsp15A1-B	155	V155H	GTA	CAC	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	155	V155del2	GTa	--a	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	155	V155D	gTA	gAC	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	155	V155E	gTA	gAG	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	155	V155Q	GTA	CAG	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	155	V155del	GTA	---	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	AY.45	0.000122
ORF1ab/nsp15A1-B	155	V155L	Gta	Tta	1	1	AY.46	0.000104
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	155	V155L	Gta	Tta	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	155	V155del	GTA	---	1	1	AY.5	0.000021
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	AY.5.3	0.000337
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	AY.51	0.000909
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	1	1	AY.54	0.000095
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	AY.58	0.000907
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	AY.59	0.00053
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	AY.6	0.000041
ORF1ab/nsp15A1-B	155	V155L	Gta	Tta	1	1	AY.6	0.000041
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	AY.60	0.000938
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	AY.61	0.000105
ORF1ab/nsp15A1-B	155	V155L	GtA	TtG	1	1	AY.62	0.000436
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	AY.67	0.000464
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	AY.73	0.000665
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	AY.75	0.000056
ORF1ab/nsp15A1-B	155	V155del	GTA	---	1	1	AY.84	0.000437
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	AY.85	0.000427
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	AY.9.1	0.000084
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	1	1	AY.9.2	0.000037
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	AY.93	0.000273
ORF1ab/nsp15A1-B	155	V155D	gTA	gAC	1	1	AY.99	0.001049
ORF1ab/nsp15A1-B	155	V155Q	GTA	CAG	1	1	AY.99	0.001049
ORF1ab/nsp15A1-B	155	V155H	GTA	CAC	1	1	AY.99	0.001049
ORF1ab/nsp15A1-B	155	V155E	gTA	gAG	1	1	AY.99	0.001049
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	AZ.1	0.000867
ORF1ab/nsp15A1-B	155	V155del	GTA	---	1	1	AZ.2	0.000821
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	AZ.3	0.00152
ORF1ab/nsp15A1-B	155	V155C	GTA	TGC	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	155	V155D	gTA	gAC	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	155	V155F	GtA	TtC	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	155	V155W	GTA	TGG	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	155	V155Y	GTA	TAC	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	155	V155del	GTA	---	1	1	B.1.1.207	0.001182
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	B.1.1.214	0.000055
ORF1ab/nsp15A1-B	155	V155L	Gta	Tta	1	1	B.1.1.214	0.000055
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	B.1.1.222	0.000204
ORF1ab/nsp15A1-B	155	V155del	GTA	---	1	1	B.1.1.231	0.003096
ORF1ab/nsp15A1-B	155	V155L	Gta	Tta	1	1	B.1.1.275	0.011236
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	B.1.1.311	0.000358
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	B.1.1.39	0.00051
ORF1ab/nsp15A1-B	155	V155del1	GTA	-NN	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	155	V155del	GTA	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	B.1.134	0.005464
ORF1ab/nsp15A1-B	155	V155L	Gta	Tta	1	1	B.1.157	0.002985
ORF1ab/nsp15A1-B	155	V155del2	gTA	g--	1	1	B.1.160	0.000031
ORF1ab/nsp15A1-B	155	V155del	GTA	---	1	1	B.1.160	0.000031
ORF1ab/nsp15A1-B	155	V155V	gtA	gtC	1	1	B.1.177	0.000013
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	B.1.177.43	0.001477
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	1	1	B.1.177.44	0.000519
ORF1ab/nsp15A1-B	155	V155V	gtA	gtT	1	1	B.1.177.44	0.000519
ORF1ab/nsp15A1-B	155	V155del2	gTA	g--	1	1	B.1.177.83	0.001481
ORF1ab/nsp15A1-B	155	V155L	Gta	Cta	1	1	B.1.206	0.000816
ORF1ab/nsp15A1-B	155	V155L	Gta	Tta	1	1	B.1.214.2	0.0006
ORF1ab/nsp15A1-B	155	V155L	Gta	Tta	1	1	B.1.221	0.000071
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	1	1	B.1.240	0.000216
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	B.1.243	0.00007
ORF1ab/nsp15A1-B	155	V155del2	gTA	g--	1	1	B.1.258	0.000067
ORF1ab/nsp15A1-B	155	V155V	gtA	gtT	1	1	B.1.258	0.000067
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	B.1.258	0.000067
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	1	1	B.1.258.11	0.000396
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	B.1.258.17	0.000104
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	B.1.351.2	0.000303
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	B.1.375	0.00082
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	B.1.416	0.001269
ORF1ab/nsp15A1-B	155	V155del	GTA	---	1	1	B.1.416.1	0.001563
ORF1ab/nsp15A1-B	155	V155del	GTA	---	1	1	B.1.427	0.00005
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	B.1.427	0.00005
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	155	V155E	gTa	gAa	1	1	B.1.462	0.007246
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	B.1.497	0.000315
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	B.1.524	0.001406
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	B.1.524	0.001406
ORF1ab/nsp15A1-B	155	V155del	GTA	---	1	1	B.1.524	0.001406
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	1	1	B.1.525	0.000113
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	B.1.538	0.008065
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	B.1.541	0.004425
ORF1ab/nsp15A1-B	155	V155del2	gTA	g--	1	1	B.1.561	0.000397
ORF1ab/nsp15A1-B	155	V155del	GTA	---	1	1	B.1.577	0.000687
ORF1ab/nsp15A1-B	155	V155L	Gta	Tta	1	1	B.1.577	0.000687
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	B.1.595	0.000261
ORF1ab/nsp15A1-B	155	V155del	GTA	---	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	155	V155del	GTA	---	1	1	B.1.617.1	0.000129
ORF1ab/nsp15A1-B	155	V155del1	gtA	gt-	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	155	V155del	GTA	---	1	1	B.1.620	0.000946
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	B.1.621	0.000089
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	B.1.637	0.000073
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	B.1.637	0.000073
ORF1ab/nsp15A1-B	155	V155L	Gta	Tta	1	1	B.6	0.00091
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	C.14	0.004329
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	C.16	0.00106
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	155	V155del1	gtA	gt-	1	1	P.1.1	0.000318
ORF1ab/nsp15A1-B	155	V155V	gtA	gtT	1	1	P.1.10	0.000269
ORF1ab/nsp15A1-B	155	V155V	gtA	gtC	1	1	P.1.12	0.000484
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	P.1.14	0.000048
ORF1ab/nsp15A1-B	155	V155del	GTA	---	1	1	Q.8	0.000165
ORF1ab/nsp15A1-B	155	V155I	Gta	Ata	1	1	Q.8	0.000165
ORF1ab/nsp15A1-B	155	V155V	gtA	gtG	1	1	Q.8	0.000165
ORF1ab/nsp15A1-B	155	V155V	gtA	gtT	1	1	R.1	0.00009
ORF1ab/nsp15A1-B	155	V155A	gTa	gCa	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.