CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 139

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B139N139NN6591NsynaaTaaC333333120035-20037
ORF1ab/nsp15A1-B139N139SN6591SnonsynaAtaGt215215120035-20037
ORF1ab/nsp15A1-B139N139delN6591deldelAAT---132132120035-20037
ORF1ab/nsp15A1-B139N139TN6591TnonsynaAtaCt3434120035-20037
ORF1ab/nsp15A1-B139N139DN6591DnonsynAatGat21190.90476220035-20037
ORF1ab/nsp15A1-B139N139DN6591DnonsynAaTGaC2120.095238120035-20037
ORF1ab/nsp15A1-B139N139YN6591YnonsynAatTat1717120035-20037
ORF1ab/nsp15A1-B139N139KN6591KnonsynaaTaaA1590.620035-20037
ORF1ab/nsp15A1-B139N139KN6591KnonsynaaTaaG1560.420035-20037
ORF1ab/nsp15A1-B139N139del1N6591del1delAat-at950.55555620035-20037
ORF1ab/nsp15A1-B139N139del1N6591del1delAAT-NN910.11111120035-20037
ORF1ab/nsp15A1-B139N139del1N6591del1delaaTaa-910.11111120035-20037
ORF1ab/nsp15A1-B139N139del1N6591del1delAaT-aN910.11111120035-20037
ORF1ab/nsp15A1-B139N139del1N6591del1delAaT-aC910.11111120035-20037
ORF1ab/nsp15A1-B139N139IN6591InonsynaAtaTt66120035-20037
ORF1ab/nsp15A1-B139N139HN6591HnonsynAatCat33120035-20037
ORF1ab/nsp15A1-B139N139LN6591LnonsynAAtCTt33120035-20037
ORF1ab/nsp15A1-B139N139EN6591EnonsynAaTGaA22120035-20037
ORF1ab/nsp15A1-B139N139GN6591GnonsynAATGGA11120035-20037
ORF1ab/nsp15A1-B139N139FN6591FnonsynAATTTC11120035-20037
ORF1ab/nsp15A1-B139N139del2N6591del2delAAt--t11120035-20037

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B139N139NaaTaaC333333All0.000064
ORF1ab/nsp15A1-B139N139SaAtaGt215215All0.000041
ORF1ab/nsp15A1-B139N139delAAT---132132All0.000025
ORF1ab/nsp15A1-B139N139NaaTaaC6363B.1.1.70.000056
ORF1ab/nsp15A1-B139N139NaaTaaC5858B.1.4850.865672
ORF1ab/nsp15A1-B139N139SaAtaGt4545B.1.6090.021572
ORF1ab/nsp15A1-B139N139delAAT---4242B.1.1.70.000038
ORF1ab/nsp15A1-B139N139TaAtaCt3434All0.000007
ORF1ab/nsp15A1-B139N139NaaTaaC3333AY.1030.000205
ORF1ab/nsp15A1-B139N139SaAtaGt2727B.1.617.20.000102
ORF1ab/nsp15A1-B139N139delAAT---2525B.1.20.00022
ORF1ab/nsp15A1-B139N139SaAtaGt2323AY.40.000036
ORF1ab/nsp15A1-B139N139NaaTaaC2323AY.440.00014
ORF1ab/nsp15A1-B139N139NaaTaaC2222B.1.3350.226804
ORF1ab/nsp15A1-B139N139DAatGat1921All0.000004
ORF1ab/nsp15A1-B139N139DAaTGaC221All0
ORF1ab/nsp15A1-B139N139NaaTaaC1818AY.40.000028
ORF1ab/nsp15A1-B139N139YAatTat1717All0.000003
ORF1ab/nsp15A1-B139N139KaaTaaA915All0.000002
ORF1ab/nsp15A1-B139N139KaaTaaG615All0.000001
ORF1ab/nsp15A1-B139N139SaAtaGt1515B.1.20.000132
ORF1ab/nsp15A1-B139N139NaaTaaC1414AY.60.000576
ORF1ab/nsp15A1-B139N139DAatGat1111AY.1030.000068
ORF1ab/nsp15A1-B139N139SaAtaGt1111AY.9.20.000404
ORF1ab/nsp15A1-B139N139TaAtaCt1111B.1.110.30.007902
ORF1ab/nsp15A1-B139N139SaAtaGt1010B.1.2390.01221
ORF1ab/nsp15A1-B139N139del1Aat-at59All0.000001
ORF1ab/nsp15A1-B139N139del1AaT-aC19All0
ORF1ab/nsp15A1-B139N139del1AAT-NN19All0
ORF1ab/nsp15A1-B139N139del1aaTaa-19All0
ORF1ab/nsp15A1-B139N139del1AaT-aN19All0
ORF1ab/nsp15A1-B139N139SaAtaGt99AY.250.000054
ORF1ab/nsp15A1-B139N139NaaTaaC77AY.260.000198
ORF1ab/nsp15A1-B139N139SaAtaGt77AY.470.000218
ORF1ab/nsp15A1-B139N139SaAtaGt77AY.850.00299
ORF1ab/nsp15A1-B139N139NaaTaaC77B.1.1.2140.000388
ORF1ab/nsp15A1-B139N139SaAtaGt77B.1.1.70.000006
ORF1ab/nsp15A1-B139N139SaAtaGt77B.1.2430.000487
ORF1ab/nsp15A1-B139N139IaAtaTt66All0.000001
ORF1ab/nsp15A1-B139N139NaaTaaC66AY.390.000148
ORF1ab/nsp15A1-B139N139SaAtaGt66AY.520.004886
ORF1ab/nsp15A1-B139N139SaAtaGt66B.10.000055
ORF1ab/nsp15A1-B139N139NaaTaaC66B.1.1.280.001867
ORF1ab/nsp15A1-B139N139TaAtaCt66B.1.20.000053
ORF1ab/nsp15A1-B139N139NaaTaaC66B.1.617.20.000023
ORF1ab/nsp15A1-B139N139TaAtaCt55AY.230.000349
ORF1ab/nsp15A1-B139N139delAAT---55B.1.3510.000149
ORF1ab/nsp15A1-B139N139delAAT---55B.1.617.20.000019
ORF1ab/nsp15A1-B139N139delAAT---440.222222
ORF1ab/nsp15A1-B139N139delAAT---44AY.1210.000541
ORF1ab/nsp15A1-B139N139NaaTaaC44AY.250.000024
ORF1ab/nsp15A1-B139N139delAAT---44AY.430.000018
ORF1ab/nsp15A1-B139N139NaaTaaC44B.10.000037
ORF1ab/nsp15A1-B139N139SaAtaGt44B.1.1.4340.001394
ORF1ab/nsp15A1-B139N139KaaTaaA24B.1.1.70.000002
ORF1ab/nsp15A1-B139N139KaaTaaG24B.1.1.70.000002
ORF1ab/nsp15A1-B139N139del1Aat-at14B.1.1.70.000001
ORF1ab/nsp15A1-B139N139del1AAT-NN14B.1.1.70.000001
ORF1ab/nsp15A1-B139N139del1aaTaa-14B.1.1.70.000001
ORF1ab/nsp15A1-B139N139del1AaT-aN14B.1.1.70.000001
ORF1ab/nsp15A1-B139N139NaaTaaC44B.1.1600.000125
ORF1ab/nsp15A1-B139N139delAAT---44B.1.5260.000094
ORF1ab/nsp15A1-B139N139TaAtaCt44B.1.5860.043956
ORF1ab/nsp15A1-B139N139HAatCat33All0.000001
ORF1ab/nsp15A1-B139N139LAAtCTt33All0.000001
ORF1ab/nsp15A1-B139N139NaaTaaC33AY.1020.00008
ORF1ab/nsp15A1-B139N139delAAT---33AY.30.00003
ORF1ab/nsp15A1-B139N139NaaTaaC33AY.430.000013
ORF1ab/nsp15A1-B139N139YAatTat33AY.430.000013
ORF1ab/nsp15A1-B139N139DAatGat33B.10.000027
ORF1ab/nsp15A1-B139N139delAAT---33B.10.000027
ORF1ab/nsp15A1-B139N139delAAT---33B.1.10.000054
ORF1ab/nsp15A1-B139N139NaaTaaC33B.1.2210.000213
ORF1ab/nsp15A1-B139N139delAAT---33B.1.5960.000261
ORF1ab/nsp15A1-B139N139YAatTat33B.1.617.20.000011
ORF1ab/nsp15A1-B139N139NaaTaaC33P.10.000047
ORF1ab/nsp15A1-B139N139NaaTaaC33R.10.00027
ORF1ab/nsp15A1-B139N139NaaTaaC220.111111
ORF1ab/nsp15A1-B139N139EAaTGaA22All0
ORF1ab/nsp15A1-B139N139SaAtaGt22AY.1030.000012
ORF1ab/nsp15A1-B139N139delAAT---22AY.1200.000074
ORF1ab/nsp15A1-B139N139NaaTaaC22AY.290.000032
ORF1ab/nsp15A1-B139N139YAatTat22AY.30.00002
ORF1ab/nsp15A1-B139N139DAatGat22AY.40.000003
ORF1ab/nsp15A1-B139N139KaaTaaG12AY.40.000002
ORF1ab/nsp15A1-B139N139KaaTaaA12AY.40.000002
ORF1ab/nsp15A1-B139N139SaAtaGt22AY.430.000009
ORF1ab/nsp15A1-B139N139SaAtaGt22AY.50.000041
ORF1ab/nsp15A1-B139N139YAatTat22AY.610.00021
ORF1ab/nsp15A1-B139N139NaaTaaC22AY.750.000112
ORF1ab/nsp15A1-B139N139SaAtaGt22AY.780.003082
ORF1ab/nsp15A1-B139N139NaaTaaC22AY.99.20.000184
ORF1ab/nsp15A1-B139N139IaAtaTt22B.1.10.000036
ORF1ab/nsp15A1-B139N139NaaTaaC22B.1.1.2910.001485
ORF1ab/nsp15A1-B139N139TaAtaCt22B.1.1.370.000386
ORF1ab/nsp15A1-B139N139SaAtaGt22B.1.1.3740.004751
ORF1ab/nsp15A1-B139N139NaaTaaC22B.1.20.000018
ORF1ab/nsp15A1-B139N139NaaTaaC22B.1.2340.000264
ORF1ab/nsp15A1-B139N139delAAT---22B.1.2580.000133
ORF1ab/nsp15A1-B139N139SaAtaGt22B.1.2580.000133
ORF1ab/nsp15A1-B139N139delAAT---22B.1.4290.000047
ORF1ab/nsp15A1-B139N139NaaTaaC22B.1.5240.002813
ORF1ab/nsp15A1-B139N139YAatTat22B.1.5950.000522
ORF1ab/nsp15A1-B139N139NaaTaaC22B.1.617.10.000258
ORF1ab/nsp15A1-B139N139NaaTaaC22P.1.10.000635
ORF1ab/nsp15A1-B139N139KaaTaaA110.055556
ORF1ab/nsp15A1-B139N139NaaTaaC11A.2.5.30.010309
ORF1ab/nsp15A1-B139N139SaAtaGt11AD.20.000219
ORF1ab/nsp15A1-B139N139GAATGGA11All0
ORF1ab/nsp15A1-B139N139del2AAt--t11All0
ORF1ab/nsp15A1-B139N139FAATTTC11All0
ORF1ab/nsp15A1-B139N139delAAT---11AY.1000.000046
ORF1ab/nsp15A1-B139N139TaAtaCt11AY.1030.000006
ORF1ab/nsp15A1-B139N139delAAT---11AY.1070.000466
ORF1ab/nsp15A1-B139N139delAAT---11AY.1080.001103
ORF1ab/nsp15A1-B139N139HAatCat11AY.1130.000142
ORF1ab/nsp15A1-B139N139NaaTaaC11AY.1190.000035
ORF1ab/nsp15A1-B139N139GAATGGA11AY.1200.000037
ORF1ab/nsp15A1-B139N139SaAtaGt11AY.120.10.000321
ORF1ab/nsp15A1-B139N139KaaTaaA11AY.140.000088
ORF1ab/nsp15A1-B139N139NaaTaaC11AY.230.00007
ORF1ab/nsp15A1-B139N139delAAT---11AY.250.000006
ORF1ab/nsp15A1-B139N139KaaTaaA11AY.250.000006
ORF1ab/nsp15A1-B139N139SaAtaGt11AY.290.000016
ORF1ab/nsp15A1-B139N139NaaTaaC11AY.30.00001
ORF1ab/nsp15A1-B139N139SaAtaGt11AY.30.00001
ORF1ab/nsp15A1-B139N139SaAtaGt11AY.340.000097
ORF1ab/nsp15A1-B139N139HAatCat11AY.390.000025
ORF1ab/nsp15A1-B139N139TaAtaCt11AY.4.20.000022
ORF1ab/nsp15A1-B139N139NaaTaaC11AY.4.50.000107
ORF1ab/nsp15A1-B139N139TaAtaCt11AY.430.000004
ORF1ab/nsp15A1-B139N139TaAtaCt11AY.440.000006
ORF1ab/nsp15A1-B139N139EAaTGaA11AY.440.000006
ORF1ab/nsp15A1-B139N139del1Aat-at11AY.440.000006
ORF1ab/nsp15A1-B139N139delAAT---11AY.440.000006
ORF1ab/nsp15A1-B139N139NaaTaaC11AY.46.30.000934
ORF1ab/nsp15A1-B139N139SaAtaGt11AY.46.40.000165
ORF1ab/nsp15A1-B139N139HAatCat11AY.46.60.000072
ORF1ab/nsp15A1-B139N139del1Aat-at11AY.470.000031
ORF1ab/nsp15A1-B139N139delAAT---11AY.50.000021
ORF1ab/nsp15A1-B139N139NaaTaaC11AY.540.000095
ORF1ab/nsp15A1-B139N139SaAtaGt11AY.670.000464
ORF1ab/nsp15A1-B139N139SaAtaGt11AY.700.000209
ORF1ab/nsp15A1-B139N139YAatTat11AY.710.000475
ORF1ab/nsp15A1-B139N139DAaTGaC11AY.840.000437
ORF1ab/nsp15A1-B139N139EAaTGaA11AY.840.000437
ORF1ab/nsp15A1-B139N139SaAtaGt11AY.90.000068
ORF1ab/nsp15A1-B139N139del1AaT-aC11AY.9.20.000037
ORF1ab/nsp15A1-B139N139delAAT---11AY.990.001049
ORF1ab/nsp15A1-B139N139delAAT---11AZ.20.000821
ORF1ab/nsp15A1-B139N139TaAtaCt11B.10.000009
ORF1ab/nsp15A1-B139N139KaaTaaA11B.10.000009
ORF1ab/nsp15A1-B139N139del2AAt--t11B.10.000009
ORF1ab/nsp15A1-B139N139LAAtCTt11B.1.10.000018
ORF1ab/nsp15A1-B139N139del1Aat-at11B.1.10.000018
ORF1ab/nsp15A1-B139N139SaAtaGt11B.1.10.000018
ORF1ab/nsp15A1-B139N139FAATTTC11B.1.10.000018
ORF1ab/nsp15A1-B139N139SaAtaGt11B.1.1.1700.001247
ORF1ab/nsp15A1-B139N139delAAT---11B.1.1.1740.003378
ORF1ab/nsp15A1-B139N139delAAT---11B.1.1.2070.001182
ORF1ab/nsp15A1-B139N139DAatGat11B.1.1.2580.003257
ORF1ab/nsp15A1-B139N139NaaTaaC11B.1.1.3620.005618
ORF1ab/nsp15A1-B139N139NaaTaaC11B.1.1.5190.00004
ORF1ab/nsp15A1-B139N139SaAtaGt11B.1.1.670.004566
ORF1ab/nsp15A1-B139N139YAatTat11B.1.1.70.000001
ORF1ab/nsp15A1-B139N139IaAtaTt11B.1.1.70.000001
ORF1ab/nsp15A1-B139N139NaaTaaC11B.1.1.700.000341
ORF1ab/nsp15A1-B139N139delAAT---11B.1.1.700.000341
ORF1ab/nsp15A1-B139N139NaaTaaC11B.1.160.160.000929
ORF1ab/nsp15A1-B139N139SaAtaGt11B.1.1770.000013
ORF1ab/nsp15A1-B139N139del1Aat-at11B.1.1770.000013
ORF1ab/nsp15A1-B139N139IaAtaTt11B.1.177.440.000519
ORF1ab/nsp15A1-B139N139YAatTat11B.1.20.000009
ORF1ab/nsp15A1-B139N139KaaTaaA11B.1.20.000009
ORF1ab/nsp15A1-B139N139KaaTaaA11B.1.2210.000071
ORF1ab/nsp15A1-B139N139YAatTat11B.1.2210.000071
ORF1ab/nsp15A1-B139N139NaaTaaC11B.1.3110.000275
ORF1ab/nsp15A1-B139N139KaaTaaG11B.1.3510.00003
ORF1ab/nsp15A1-B139N139NaaTaaC11B.1.360.000146
ORF1ab/nsp15A1-B139N139LAAtCTt11B.1.36.10.00114
ORF1ab/nsp15A1-B139N139NaaTaaC11B.1.36.180.00042
ORF1ab/nsp15A1-B139N139DAatGat11B.1.36.370.002778
ORF1ab/nsp15A1-B139N139DAatGat11B.1.3690.000285
ORF1ab/nsp15A1-B139N139TaAtaCt11B.1.3850.010638
ORF1ab/nsp15A1-B139N139delAAT---11B.1.416.10.001563
ORF1ab/nsp15A1-B139N139delAAT---11B.1.4270.00005
ORF1ab/nsp15A1-B139N139NaaTaaC11B.1.4280.00102
ORF1ab/nsp15A1-B139N139YAatTat11B.1.438.10.000107
ORF1ab/nsp15A1-B139N139LAAtCTt11B.1.4970.000315
ORF1ab/nsp15A1-B139N139delAAT---11B.1.5150.014493
ORF1ab/nsp15A1-B139N139SaAtaGt11B.1.5150.014493
ORF1ab/nsp15A1-B139N139delAAT---11B.1.5170.000427
ORF1ab/nsp15A1-B139N139SaAtaGt11B.1.5170.000427
ORF1ab/nsp15A1-B139N139delAAT---11B.1.5240.001406
ORF1ab/nsp15A1-B139N139NaaTaaC11B.1.5260.000024
ORF1ab/nsp15A1-B139N139NaaTaaC11B.1.5770.000687
ORF1ab/nsp15A1-B139N139delAAT---11B.1.5770.000687
ORF1ab/nsp15A1-B139N139NaaTaaC11B.1.5820.000491
ORF1ab/nsp15A1-B139N139SaAtaGt11B.1.5950.000261
ORF1ab/nsp15A1-B139N139SaAtaGt11B.1.5960.000087
ORF1ab/nsp15A1-B139N139KaaTaaG11B.1.617.20.000004
ORF1ab/nsp15A1-B139N139DAaTGaC11B.1.617.20.000004
ORF1ab/nsp15A1-B139N139IaAtaTt11B.1.617.20.000004
ORF1ab/nsp15A1-B139N139delAAT---11B.1.6200.000946
ORF1ab/nsp15A1-B139N139NaaTaaC11B.1.6250.002353
ORF1ab/nsp15A1-B139N139NaaTaaC11B.1.6270.00202
ORF1ab/nsp15A1-B139N139NaaTaaC11B.1.6370.000073
ORF1ab/nsp15A1-B139N139SaAtaGt11B.30.000831
ORF1ab/nsp15A1-B139N139delAAT---11B.340.013699
ORF1ab/nsp15A1-B139N139NaaTaaC11B.60.00091
ORF1ab/nsp15A1-B139N139SaAtaGt11C.140.004329
ORF1ab/nsp15A1-B139N139KaaTaaG11D.20.000075
ORF1ab/nsp15A1-B139N139IaAtaTt11D.20.000075
ORF1ab/nsp15A1-B139N139NaaTaaC11P.1.140.000048
ORF1ab/nsp15A1-B139N139delAAT---11P.1.150.000232
ORF1ab/nsp15A1-B139N139delAAT---11Q.80.000165