CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 139 | N139N | N6591N | syn | aaT | aaC | 333 | 333 | 1 | 20035-20037 |
ORF1ab/nsp15A1-B | 139 | N139S | N6591S | nonsyn | aAt | aGt | 215 | 215 | 1 | 20035-20037 |
ORF1ab/nsp15A1-B | 139 | N139del | N6591del | del | AAT | --- | 132 | 132 | 1 | 20035-20037 |
ORF1ab/nsp15A1-B | 139 | N139T | N6591T | nonsyn | aAt | aCt | 34 | 34 | 1 | 20035-20037 |
ORF1ab/nsp15A1-B | 139 | N139D | N6591D | nonsyn | Aat | Gat | 21 | 19 | 0.904762 | 20035-20037 |
ORF1ab/nsp15A1-B | 139 | N139D | N6591D | nonsyn | AaT | GaC | 21 | 2 | 0.0952381 | 20035-20037 |
ORF1ab/nsp15A1-B | 139 | N139Y | N6591Y | nonsyn | Aat | Tat | 17 | 17 | 1 | 20035-20037 |
ORF1ab/nsp15A1-B | 139 | N139K | N6591K | nonsyn | aaT | aaA | 15 | 9 | 0.6 | 20035-20037 |
ORF1ab/nsp15A1-B | 139 | N139K | N6591K | nonsyn | aaT | aaG | 15 | 6 | 0.4 | 20035-20037 |
ORF1ab/nsp15A1-B | 139 | N139del1 | N6591del1 | del | Aat | -at | 9 | 5 | 0.555556 | 20035-20037 |
ORF1ab/nsp15A1-B | 139 | N139del1 | N6591del1 | del | AAT | -NN | 9 | 1 | 0.111111 | 20035-20037 |
ORF1ab/nsp15A1-B | 139 | N139del1 | N6591del1 | del | aaT | aa- | 9 | 1 | 0.111111 | 20035-20037 |
ORF1ab/nsp15A1-B | 139 | N139del1 | N6591del1 | del | AaT | -aN | 9 | 1 | 0.111111 | 20035-20037 |
ORF1ab/nsp15A1-B | 139 | N139del1 | N6591del1 | del | AaT | -aC | 9 | 1 | 0.111111 | 20035-20037 |
ORF1ab/nsp15A1-B | 139 | N139I | N6591I | nonsyn | aAt | aTt | 6 | 6 | 1 | 20035-20037 |
ORF1ab/nsp15A1-B | 139 | N139H | N6591H | nonsyn | Aat | Cat | 3 | 3 | 1 | 20035-20037 |
ORF1ab/nsp15A1-B | 139 | N139L | N6591L | nonsyn | AAt | CTt | 3 | 3 | 1 | 20035-20037 |
ORF1ab/nsp15A1-B | 139 | N139E | N6591E | nonsyn | AaT | GaA | 2 | 2 | 1 | 20035-20037 |
ORF1ab/nsp15A1-B | 139 | N139G | N6591G | nonsyn | AAT | GGA | 1 | 1 | 1 | 20035-20037 |
ORF1ab/nsp15A1-B | 139 | N139F | N6591F | nonsyn | AAT | TTC | 1 | 1 | 1 | 20035-20037 |
ORF1ab/nsp15A1-B | 139 | N139del2 | N6591del2 | del | AAt | --t | 1 | 1 | 1 | 20035-20037 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 333 | 333 | All | 0.000064 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 215 | 215 | All | 0.000041 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 132 | 132 | All | 0.000025 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 63 | 63 | B.1.1.7 | 0.000056 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 58 | 58 | B.1.485 | 0.865672 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 45 | 45 | B.1.609 | 0.021572 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 42 | 42 | B.1.1.7 | 0.000038 |
ORF1ab/nsp15A1-B | 139 | N139T | aAt | aCt | 34 | 34 | All | 0.000007 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 33 | 33 | AY.103 | 0.000205 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 27 | 27 | B.1.617.2 | 0.000102 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 25 | 25 | B.1.2 | 0.00022 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 23 | 23 | AY.4 | 0.000036 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 23 | 23 | AY.44 | 0.00014 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 22 | 22 | B.1.335 | 0.226804 |
ORF1ab/nsp15A1-B | 139 | N139D | Aat | Gat | 19 | 21 | All | 0.000004 |
ORF1ab/nsp15A1-B | 139 | N139D | AaT | GaC | 2 | 21 | All | 0 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 18 | 18 | AY.4 | 0.000028 |
ORF1ab/nsp15A1-B | 139 | N139Y | Aat | Tat | 17 | 17 | All | 0.000003 |
ORF1ab/nsp15A1-B | 139 | N139K | aaT | aaA | 9 | 15 | All | 0.000002 |
ORF1ab/nsp15A1-B | 139 | N139K | aaT | aaG | 6 | 15 | All | 0.000001 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 15 | 15 | B.1.2 | 0.000132 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 14 | 14 | AY.6 | 0.000576 |
ORF1ab/nsp15A1-B | 139 | N139D | Aat | Gat | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 11 | 11 | AY.9.2 | 0.000404 |
ORF1ab/nsp15A1-B | 139 | N139T | aAt | aCt | 11 | 11 | B.1.110.3 | 0.007902 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 10 | 10 | B.1.239 | 0.01221 |
ORF1ab/nsp15A1-B | 139 | N139del1 | Aat | -at | 5 | 9 | All | 0.000001 |
ORF1ab/nsp15A1-B | 139 | N139del1 | AaT | -aC | 1 | 9 | All | 0 |
ORF1ab/nsp15A1-B | 139 | N139del1 | AAT | -NN | 1 | 9 | All | 0 |
ORF1ab/nsp15A1-B | 139 | N139del1 | aaT | aa- | 1 | 9 | All | 0 |
ORF1ab/nsp15A1-B | 139 | N139del1 | AaT | -aN | 1 | 9 | All | 0 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 7 | 7 | AY.26 | 0.000198 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 7 | 7 | AY.85 | 0.00299 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 7 | 7 | B.1.1.214 | 0.000388 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 7 | 7 | B.1.243 | 0.000487 |
ORF1ab/nsp15A1-B | 139 | N139I | aAt | aTt | 6 | 6 | All | 0.000001 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 6 | 6 | AY.52 | 0.004886 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 6 | 6 | B.1.1.28 | 0.001867 |
ORF1ab/nsp15A1-B | 139 | N139T | aAt | aCt | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp15A1-B | 139 | N139T | aAt | aCt | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 4 | 4 | B.1.1.434 | 0.001394 |
ORF1ab/nsp15A1-B | 139 | N139K | aaT | aaA | 2 | 4 | B.1.1.7 | 0.000002 |
ORF1ab/nsp15A1-B | 139 | N139K | aaT | aaG | 2 | 4 | B.1.1.7 | 0.000002 |
ORF1ab/nsp15A1-B | 139 | N139del1 | Aat | -at | 1 | 4 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 139 | N139del1 | AAT | -NN | 1 | 4 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 139 | N139del1 | aaT | aa- | 1 | 4 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 139 | N139del1 | AaT | -aN | 1 | 4 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp15A1-B | 139 | N139T | aAt | aCt | 4 | 4 | B.1.586 | 0.043956 |
ORF1ab/nsp15A1-B | 139 | N139H | Aat | Cat | 3 | 3 | All | 0.000001 |
ORF1ab/nsp15A1-B | 139 | N139L | AAt | CTt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp15A1-B | 139 | N139Y | Aat | Tat | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp15A1-B | 139 | N139D | Aat | Gat | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp15A1-B | 139 | N139Y | Aat | Tat | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 2 | 2 | 0.111111 | |
ORF1ab/nsp15A1-B | 139 | N139E | AaT | GaA | 2 | 2 | All | 0 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp15A1-B | 139 | N139Y | Aat | Tat | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp15A1-B | 139 | N139D | Aat | Gat | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp15A1-B | 139 | N139K | aaT | aaG | 1 | 2 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 139 | N139K | aaT | aaA | 1 | 2 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp15A1-B | 139 | N139Y | Aat | Tat | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 2 | 2 | AY.78 | 0.003082 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp15A1-B | 139 | N139I | aAt | aTt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp15A1-B | 139 | N139T | aAt | aCt | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 2 | 2 | B.1.1.374 | 0.004751 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp15A1-B | 139 | N139Y | Aat | Tat | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp15A1-B | 139 | N139K | aaT | aaA | 1 | 1 | 0.055556 | |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp15A1-B | 139 | N139G | AAT | GGA | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 139 | N139del2 | AAt | --t | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 139 | N139F | AAT | TTC | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp15A1-B | 139 | N139T | aAt | aCt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp15A1-B | 139 | N139H | Aat | Cat | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp15A1-B | 139 | N139G | AAT | GGA | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp15A1-B | 139 | N139K | aaT | aaA | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 139 | N139K | aaT | aaA | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp15A1-B | 139 | N139H | Aat | Cat | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp15A1-B | 139 | N139T | aAt | aCt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp15A1-B | 139 | N139T | aAt | aCt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 139 | N139T | aAt | aCt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 139 | N139E | AaT | GaA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 139 | N139del1 | Aat | -at | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp15A1-B | 139 | N139H | Aat | Cat | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp15A1-B | 139 | N139del1 | Aat | -at | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp15A1-B | 139 | N139Y | Aat | Tat | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp15A1-B | 139 | N139D | AaT | GaC | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp15A1-B | 139 | N139E | AaT | GaA | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp15A1-B | 139 | N139del1 | AaT | -aC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp15A1-B | 139 | N139T | aAt | aCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 139 | N139K | aaT | aaA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 139 | N139del2 | AAt | --t | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 139 | N139L | AAt | CTt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 139 | N139del1 | Aat | -at | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 139 | N139F | AAT | TTC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp15A1-B | 139 | N139D | Aat | Gat | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 1 | 1 | B.1.1.67 | 0.004566 |
ORF1ab/nsp15A1-B | 139 | N139Y | Aat | Tat | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 139 | N139I | aAt | aTt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 139 | N139del1 | Aat | -at | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 139 | N139I | aAt | aTt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp15A1-B | 139 | N139Y | Aat | Tat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 139 | N139K | aaT | aaA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 139 | N139K | aaT | aaA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp15A1-B | 139 | N139Y | Aat | Tat | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp15A1-B | 139 | N139K | aaT | aaG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp15A1-B | 139 | N139L | AAt | CTt | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp15A1-B | 139 | N139D | Aat | Gat | 1 | 1 | B.1.36.37 | 0.002778 |
ORF1ab/nsp15A1-B | 139 | N139D | Aat | Gat | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp15A1-B | 139 | N139T | aAt | aCt | 1 | 1 | B.1.385 | 0.010638 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp15A1-B | 139 | N139Y | Aat | Tat | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp15A1-B | 139 | N139L | AAt | CTt | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 1 | 1 | B.1.515 | 0.014493 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 1 | 1 | B.1.515 | 0.014493 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 139 | N139K | aaT | aaG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 139 | N139D | AaT | GaC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 139 | N139I | aAt | aTt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp15A1-B | 139 | N139S | aAt | aGt | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp15A1-B | 139 | N139K | aaT | aaG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp15A1-B | 139 | N139I | aAt | aTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp15A1-B | 139 | N139N | aaT | aaC | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp15A1-B | 139 | N139del | AAT | --- | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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