CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 127 | V127F | V6579F | nonsyn | Gtt | Ttt | 10351 | 10351 | 1 | 19999-20001 |
ORF1ab/nsp15A1-B | 127 | V127V | V6579V | syn | gtT | gtA | 264 | 120 | 0.454545 | 19999-20001 |
ORF1ab/nsp15A1-B | 127 | V127V | V6579V | syn | gtT | gtC | 264 | 104 | 0.393939 | 19999-20001 |
ORF1ab/nsp15A1-B | 127 | V127V | V6579V | syn | gtT | gtG | 264 | 40 | 0.151515 | 19999-20001 |
ORF1ab/nsp15A1-B | 127 | V127I | V6579I | nonsyn | Gtt | Att | 157 | 157 | 1 | 19999-20001 |
ORF1ab/nsp15A1-B | 127 | V127del | V6579del | del | GTT | --- | 156 | 156 | 1 | 19999-20001 |
ORF1ab/nsp15A1-B | 127 | V127A | V6579A | nonsyn | gTt | gCt | 143 | 143 | 1 | 19999-20001 |
ORF1ab/nsp15A1-B | 127 | V127L | V6579L | nonsyn | Gtt | Ctt | 12 | 12 | 1 | 19999-20001 |
ORF1ab/nsp15A1-B | 127 | V127G | V6579G | nonsyn | gTt | gGt | 9 | 9 | 1 | 19999-20001 |
ORF1ab/nsp15A1-B | 127 | V127del1 | V6579del1 | del | gTt | g-t | 5 | 2 | 0.4 | 19999-20001 |
ORF1ab/nsp15A1-B | 127 | V127del1 | V6579del1 | del | GTT | -NN | 5 | 1 | 0.2 | 19999-20001 |
ORF1ab/nsp15A1-B | 127 | V127del1 | V6579del1 | del | GtT | -tN | 5 | 1 | 0.2 | 19999-20001 |
ORF1ab/nsp15A1-B | 127 | V127del1 | V6579del1 | del | Gtt | -tt | 5 | 1 | 0.2 | 19999-20001 |
ORF1ab/nsp15A1-B | 127 | V127D | V6579D | nonsyn | gTt | gAt | 3 | 3 | 1 | 19999-20001 |
ORF1ab/nsp15A1-B | 127 | V127K | V6579K | nonsyn | GTT | AAG | 3 | 2 | 0.666667 | 19999-20001 |
ORF1ab/nsp15A1-B | 127 | V127K | V6579K | nonsyn | GTT | AAA | 3 | 1 | 0.333333 | 19999-20001 |
ORF1ab/nsp15A1-B | 127 | V127E | V6579E | nonsyn | gTT | gAA | 1 | 1 | 1 | 19999-20001 |
ORF1ab/nsp15A1-B | 127 | V127Y | V6579Y | nonsyn | GTt | TAt | 1 | 1 | 1 | 19999-20001 |
ORF1ab/nsp15A1-B | 127 | V127H | V6579H | nonsyn | GTt | CAt | 1 | 1 | 1 | 19999-20001 |
ORF1ab/nsp15A1-B | 127 | V127del2 | V6579del2 | del | gTT | g-- | 1 | 1 | 1 | 19999-20001 |
ORF1ab/nsp15A1-B | 127 | V127S | V6579S | nonsyn | GTt | TCt | 1 | 1 | 1 | 19999-20001 |
ORF1ab/nsp15A1-B | 127 | V127Q | V6579Q | nonsyn | GTT | CAA | 1 | 1 | 1 | 19999-20001 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 10351 | 10351 | All | 0.00198 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2569 | 2569 | B.1.177.45 | 0.979413 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1136 | 1136 | P.1.17.1 | 0.993876 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 799 | 799 | B.1.1.7 | 0.000715 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 797 | 797 | AY.4 | 0.00124 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 549 | 549 | P.1 | 0.008649 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 446 | 446 | AY.9.2 | 0.016381 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 363 | 363 | B.1.617.2 | 0.001367 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 310 | 310 | AY.43 | 0.001373 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtA | 120 | 264 | All | 0.000023 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 104 | 264 | All | 0.00002 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtG | 40 | 264 | All | 0.000008 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 238 | 238 | AY.25 | 0.001432 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 232 | 232 | AY.44 | 0.001412 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 198 | 198 | B.1.2 | 0.001743 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 157 | 157 | All | 0.00003 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 156 | 156 | All | 0.00003 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 143 | 143 | All | 0.000027 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 137 | 137 | AY.29 | 0.002161 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 131 | 131 | B.1.177 | 0.001725 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 129 | 129 | AY.103 | 0.000801 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 121 | 121 | AY.72 | 0.164626 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 110 | 110 | B.1 | 0.001008 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 103 | 103 | AY.3 | 0.001024 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtA | 85 | 94 | AY.103 | 0.000528 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 9 | 94 | AY.103 | 0.000056 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 91 | 91 | AY.92 | 0.026142 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 90 | 90 | B.1.177.60 | 0.019659 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 73 | 73 | AY.102 | 0.001936 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 71 | 71 | B.1.36.18 | 0.029832 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 67 | 67 | AY.33 | 0.004474 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 63 | 63 | B.1.1 | 0.001143 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 63 | 63 | B.1.525 | 0.007129 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 56 | 56 | B.1.160.16 | 0.052045 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 52 | 52 | B.1.243 | 0.003618 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 47 | 47 | B.1.1.7 | 0.000042 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 44 | 44 | AY.118 | 0.002757 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 40 | 40 | AY.20 | 0.001555 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 36 | 36 | B.1.429 | 0.000847 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 34 | 34 | AY.39 | 0.00084 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 33 | 33 | AY.3 | 0.000328 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtG | 30 | 32 | AY.117 | 0.002535 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 2 | 32 | AY.117 | 0.000169 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 31 | 31 | AY.23 | 0.002162 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 31 | 31 | B.1.2 | 0.000273 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 30 | 30 | AY.42 | 0.001207 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 29 | 29 | AY.54 | 0.002765 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 28 | 28 | B.1.561 | 0.011116 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 26 | 26 | AY.116 | 0.007456 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 26 | 26 | AY.84 | 0.011374 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 25 | 25 | AY.26 | 0.000708 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 22 | 24 | B.1.1.7 | 0.00002 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtA | 1 | 24 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtG | 1 | 24 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 24 | 24 | B.1.305 | 0.051613 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtA | 18 | 23 | AY.4 | 0.000028 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtG | 4 | 23 | AY.4 | 0.000006 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 1 | 23 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 23 | 23 | AY.4.2.1 | 0.003427 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 23 | 23 | AY.5 | 0.000475 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 22 | 22 | B.1.1.7 | 0.00002 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 20 | 20 | B.1.1.317 | 0.008234 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 19 | 19 | AY.34 | 0.001842 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 19 | 19 | AY.4.2 | 0.000412 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 16 | 18 | B.1.617.2 | 0.00006 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtA | 2 | 18 | B.1.617.2 | 0.000008 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 17 | 17 | B.1.177.4 | 0.003588 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 17 | 17 | B.1.240 | 0.003665 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 17 | 17 | B.1.526 | 0.0004 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 17 | 17 | P.1.14 | 0.000813 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 15 | 15 | AY.4.4 | 0.006137 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 15 | 15 | AY.6 | 0.000617 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 15 | 15 | AY.61 | 0.001572 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 15 | 15 | B.1.1.519 | 0.000596 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 14 | 14 | AY.20 | 0.000544 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 14 | 14 | B.1.177.62 | 0.016687 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 14 | 14 | B.1.351 | 0.000416 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 14 | 14 | C.37 | 0.001625 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 13 | 13 | AY.46 | 0.001353 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 13 | 13 | B.1.36 | 0.001897 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 13 | 13 | B.1.427 | 0.000656 |
ORF1ab/nsp15A1-B | 127 | V127L | Gtt | Ctt | 12 | 12 | All | 0.000002 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 12 | 12 | AY.120 | 0.000446 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 12 | 12 | AY.27 | 0.000777 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 12 | 12 | AY.46.6 | 0.000866 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 12 | 12 | AY.60 | 0.011257 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 10 | 12 | B.1 | 0.000092 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtA | 2 | 12 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 11 | 11 | AY.46.5 | 0.002183 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 11 | 11 | B.1.1.284 | 0.001181 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 11 | 11 | B.1.637 | 0.000804 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 10 | 10 | A.23.1 | 0.007042 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 10 | 10 | AY.119 | 0.000353 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 10 | 10 | B.1.617.1 | 0.00129 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 10 | 10 | B.1.630 | 0.052356 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 10 | 10 | B.55 | 0.029499 |
ORF1ab/nsp15A1-B | 127 | V127G | gTt | gGt | 9 | 9 | All | 0.000002 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 9 | 9 | AY.13 | 0.001449 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 9 | 9 | AY.14 | 0.000792 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 9 | 9 | AY.47 | 0.00028 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 9 | 9 | AY.81 | 0.017928 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 9 | 9 | AY.98.1 | 0.000436 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 9 | 9 | B.1.231 | 0.290323 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 9 | 9 | B.1.632 | 0.060403 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 8 | 8 | AY.100 | 0.000368 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 8 | 8 | AY.75 | 0.000448 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 8 | 8 | AY.98 | 0.000632 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtA | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 8 | 8 | B.1.36.17 | 0.003953 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 8 | 8 | B.1.621 | 0.000708 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 8 | 8 | P.1.1 | 0.002541 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 8 | 8 | P.1.12 | 0.003872 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 8 | 8 | P.2 | 0.001493 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 8 | 8 | Q.8 | 0.001319 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 8 | 8 | R.1 | 0.00072 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 7 | 7 | AY.13 | 0.001127 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 6 | 7 | AY.43 | 0.000027 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtA | 1 | 7 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 7 | 7 | AY.48 | 0.003256 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 7 | 7 | B.1.234 | 0.000924 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 7 | 7 | B.52 | 0.070707 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 7 | 7 | C.36.3 | 0.003971 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 7 | 7 | P.1.7 | 0.002235 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 6 | 6 | AY.36 | 0.000889 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 4 | 6 | AY.44 | 0.000024 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtA | 1 | 6 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtG | 1 | 6 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 6 | 6 | AY.46.4 | 0.000987 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 6 | 6 | AY.5.3 | 0.002024 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 6 | 6 | AY.75.1 | 0.001082 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 6 | 6 | AY.9.1 | 0.000502 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 6 | 6 | AY.99 | 0.006296 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 6 | 6 | B.1.214.3 | 0.042857 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 6 | 6 | B.1.459 | 0.02449 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 6 | 6 | B.1.575 | 0.00182 |
ORF1ab/nsp15A1-B | 127 | V127del1 | gTt | g-t | 2 | 5 | All | 0 |
ORF1ab/nsp15A1-B | 127 | V127del1 | Gtt | -tt | 1 | 5 | All | 0 |
ORF1ab/nsp15A1-B | 127 | V127del1 | GtT | -tN | 1 | 5 | All | 0 |
ORF1ab/nsp15A1-B | 127 | V127del1 | GTT | -NN | 1 | 5 | All | 0 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 5 | 5 | AY.1 | 0.001979 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 5 | 5 | AY.38 | 0.002496 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 5 | 5 | AY.57 | 0.003281 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 5 | 5 | AY.70 | 0.001043 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 5 | 5 | B.1.1.220 | 0.009294 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 5 | 5 | B.1.1.306 | 0.002192 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 5 | 5 | B.1.177.21 | 0.000382 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 5 | 5 | B.1.177.86 | 0.000917 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 5 | 5 | B.1.609 | 0.002397 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 5 | 5 | P.1.10 | 0.001347 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 4 | 4 | AY.101 | 0.001962 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 4 | 4 | AY.107 | 0.001864 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 4 | 4 | AY.34.1 | 0.00204 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 4 | 4 | AY.71 | 0.0019 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 4 | 4 | AY.73 | 0.002661 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 4 | 4 | AY.87 | 0.003331 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 4 | 4 | AY.88 | 0.003537 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 4 | 4 | B.1.1.263 | 0.006231 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 4 | 4 | B.1.1.41 | 0.025316 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 4 | 4 | B.1.1.432 | 0.005063 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 4 | 4 | B.1.222 | 0.006768 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 4 | 4 | B.1.36.27 | 0.003053 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 4 | 4 | B.1.602 | 0.026144 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp15A1-B | 127 | V127D | gTt | gAt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp15A1-B | 127 | V127K | GTT | AAG | 2 | 3 | All | 0 |
ORF1ab/nsp15A1-B | 127 | V127K | GTT | AAA | 1 | 3 | All | 0 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 3 | 3 | AY.104 | 0.005952 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 3 | 3 | AY.29.1 | 0.000662 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 3 | 3 | AY.52 | 0.002443 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 3 | 3 | AY.7.1 | 0.000338 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 3 | 3 | AY.86 | 0.00249 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 3 | 3 | B.1.1.265 | 0.009464 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 3 | 3 | B.1.1.351 | 0.00838 |
ORF1ab/nsp15A1-B | 127 | V127K | GTT | AAG | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp15A1-B | 127 | V127K | GTT | AAA | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 3 | 3 | B.1.111 | 0.003525 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 3 | 3 | B.1.22 | 0.003953 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 3 | 3 | B.1.397 | 0.014563 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 3 | 3 | B.1.448 | 0.007874 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 3 | 3 | B.1.599 | 0.010949 |
ORF1ab/nsp15A1-B | 127 | V127G | gTt | gGt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | AY.115 | 0.010417 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp15A1-B | 127 | V127L | Gtt | Ctt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | B.1.1.121 | 0.004854 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | B.1.1.228 | 0.006098 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | B.1.1.302 | 0.004149 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp15A1-B | 127 | V127G | gTt | gGt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp15A1-B | 127 | V127del1 | gTt | g-t | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 127 | V127del1 | GTT | -NN | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | B.1.177.32 | 0.002699 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | B.1.177.77 | 0.001452 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | B.1.219 | 0.018868 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | B.1.336 | 0.004878 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | B.1.436 | 0.002058 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | B.1.441 | 0.019231 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | B.1.631 | 0.006734 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | B.6.6 | 0.001778 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | A.11 | 0.058824 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | A.18 | 0.05 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp15A1-B | 127 | V127Y | GTt | TAt | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 127 | V127E | gTT | gAA | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 127 | V127S | GTt | TCt | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 127 | V127del2 | gTT | g-- | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 127 | V127Q | GTT | CAA | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 127 | V127H | GTt | CAt | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 127 | V127del1 | gTt | g-t | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 127 | V127L | Gtt | Ctt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp15A1-B | 127 | V127G | gTt | gGt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp15A1-B | 127 | V127L | Gtt | Ctt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 127 | V127S | GTt | TCt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtG | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp15A1-B | 127 | V127G | gTt | gGt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 127 | V127G | gTt | gGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 127 | V127Q | GTT | CAA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 127 | V127H | GTt | CAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 127 | V127Y | GTt | TAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 1 | 1 | B.1.1.118 | 0.010204 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtG | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.254 | 0.011236 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp15A1-B | 127 | V127L | Gtt | Ctt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.370 | 0.012658 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.406 | 0.006494 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp15A1-B | 127 | V127del2 | gTT | g-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 127 | V127E | gTT | gAA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 127 | V127L | Gtt | Ctt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.1.82 | 0.038462 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.160.12 | 0.00641 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.177.3 | 0.007634 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 127 | V127del1 | GtT | -tN | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 127 | V127L | Gtt | Ctt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp15A1-B | 127 | V127L | Gtt | Ctt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp15A1-B | 127 | V127D | gTt | gAt | 1 | 1 | B.1.221.4 | 0.004167 |
ORF1ab/nsp15A1-B | 127 | V127del1 | Gtt | -tt | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtG | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.313 | 0.006579 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.335 | 0.010309 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.354 | 0.043478 |
ORF1ab/nsp15A1-B | 127 | V127D | gTt | gAt | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp15A1-B | 127 | V127L | Gtt | Ctt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.393 | 0.028571 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.437 | 0.020833 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtA | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.506 | 0.02381 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | B.1.515 | 0.014493 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.548 | 0.035714 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.570 | 0.002941 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp15A1-B | 127 | V127L | Gtt | Ctt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 127 | V127D | gTt | gAt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 127 | V127L | Gtt | Ctt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp15A1-B | 127 | V127L | Gtt | Ctt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp15A1-B | 127 | V127A | gTt | gCt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtG | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp15A1-B | 127 | V127G | gTt | gGt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp15A1-B | 127 | V127I | Gtt | Att | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtC | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp15A1-B | 127 | V127F | Gtt | Ttt | 1 | 1 | Q.6 | 0.006623 |
ORF1ab/nsp15A1-B | 127 | V127del | GTT | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp15A1-B | 127 | V127V | gtT | gtA | 1 | 1 | S.1 | 0.00495 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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