CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 122 | F122del1 | F6574del1 | del | Ttt | -tt | 464 | 462 | 0.99569 | 19984-19986 |
ORF1ab/nsp15A1-B | 122 | F122del1 | F6574del1 | del | TTt | -Nt | 464 | 2 | 0.00431034 | 19984-19986 |
ORF1ab/nsp15A1-B | 122 | F122L | F6574L | nonsyn | Ttt | Ctt | 441 | 423 | 0.959184 | 19984-19986 |
ORF1ab/nsp15A1-B | 122 | F122L | F6574L | nonsyn | ttT | ttG | 441 | 12 | 0.0272109 | 19984-19986 |
ORF1ab/nsp15A1-B | 122 | F122L | F6574L | nonsyn | ttT | ttA | 441 | 5 | 0.0113379 | 19984-19986 |
ORF1ab/nsp15A1-B | 122 | F122L | F6574L | nonsyn | TtT | CtC | 441 | 1 | 0.00226757 | 19984-19986 |
ORF1ab/nsp15A1-B | 122 | F122F | F6574F | syn | ttT | ttC | 305 | 305 | 1 | 19984-19986 |
ORF1ab/nsp15A1-B | 122 | F122del | F6574del | del | TTT | --- | 190 | 190 | 1 | 19984-19986 |
ORF1ab/nsp15A1-B | 122 | F122S | F6574S | nonsyn | tTt | tCt | 45 | 42 | 0.933333 | 19984-19986 |
ORF1ab/nsp15A1-B | 122 | F122S | F6574S | nonsyn | tTT | tCG | 45 | 2 | 0.0444444 | 19984-19986 |
ORF1ab/nsp15A1-B | 122 | F122S | F6574S | nonsyn | TTt | AGt | 45 | 1 | 0.0222222 | 19984-19986 |
ORF1ab/nsp15A1-B | 122 | F122del2 | F6574del2 | del | TTt | --t | 18 | 16 | 0.888889 | 19984-19986 |
ORF1ab/nsp15A1-B | 122 | F122del2 | F6574del2 | del | tTT | t-- | 18 | 1 | 0.0555556 | 19984-19986 |
ORF1ab/nsp15A1-B | 122 | F122del2 | F6574del2 | del | TTT | --N | 18 | 1 | 0.0555556 | 19984-19986 |
ORF1ab/nsp15A1-B | 122 | F122I | F6574I | nonsyn | Ttt | Att | 7 | 5 | 0.714286 | 19984-19986 |
ORF1ab/nsp15A1-B | 122 | F122I | F6574I | nonsyn | TtT | AtA | 7 | 2 | 0.285714 | 19984-19986 |
ORF1ab/nsp15A1-B | 122 | F122V | F6574V | nonsyn | Ttt | Gtt | 6 | 3 | 0.5 | 19984-19986 |
ORF1ab/nsp15A1-B | 122 | F122V | F6574V | nonsyn | TtT | GtG | 6 | 2 | 0.333333 | 19984-19986 |
ORF1ab/nsp15A1-B | 122 | F122V | F6574V | nonsyn | TtT | GtC | 6 | 1 | 0.166667 | 19984-19986 |
ORF1ab/nsp15A1-B | 122 | F122C | F6574C | nonsyn | tTt | tGt | 5 | 5 | 1 | 19984-19986 |
ORF1ab/nsp15A1-B | 122 | F122Y | F6574Y | nonsyn | tTt | tAt | 1 | 1 | 1 | 19984-19986 |
ORF1ab/nsp15A1-B | 122 | F122N | F6574N | nonsyn | TTT | AAC | 1 | 1 | 1 | 19984-19986 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 462 | 464 | All | 0.000088 |
ORF1ab/nsp15A1-B | 122 | F122del1 | TTt | -Nt | 2 | 464 | All | 0 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 423 | 441 | All | 0.000081 |
ORF1ab/nsp15A1-B | 122 | F122L | ttT | ttG | 12 | 441 | All | 0.000002 |
ORF1ab/nsp15A1-B | 122 | F122L | ttT | ttA | 5 | 441 | All | 0.000001 |
ORF1ab/nsp15A1-B | 122 | F122L | TtT | CtC | 1 | 441 | All | 0 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 332 | 337 | B.1.1.7 | 0.000297 |
ORF1ab/nsp15A1-B | 122 | F122L | ttT | ttG | 3 | 337 | B.1.1.7 | 0.000003 |
ORF1ab/nsp15A1-B | 122 | F122L | ttT | ttA | 2 | 337 | B.1.1.7 | 0.000002 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 305 | 305 | All | 0.000058 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 190 | 190 | All | 0.000036 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 108 | 108 | B.1.2 | 0.000951 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 68 | 68 | AY.44 | 0.000414 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 54 | 56 | B.1.1.7 | 0.000048 |
ORF1ab/nsp15A1-B | 122 | F122del1 | TTt | -Nt | 2 | 56 | B.1.1.7 | 0.000002 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 48 | 48 | B.1.1.7 | 0.000043 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 47 | 47 | AY.120.1 | 0.015088 |
ORF1ab/nsp15A1-B | 122 | F122S | tTt | tCt | 42 | 45 | All | 0.000008 |
ORF1ab/nsp15A1-B | 122 | F122S | tTT | tCG | 2 | 45 | All | 0 |
ORF1ab/nsp15A1-B | 122 | F122S | TTt | AGt | 1 | 45 | All | 0 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 36 | 36 | B.1.1.7 | 0.000032 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 36 | 36 | B.1.2 | 0.000317 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 31 | 31 | AY.103 | 0.000192 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 31 | 31 | AY.43 | 0.000137 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 29 | 29 | AY.34 | 0.002812 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 25 | 25 | C.36.2 | 0.862069 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 19 | 19 | B.1.617.2 | 0.000072 |
ORF1ab/nsp15A1-B | 122 | F122del2 | TTt | --t | 16 | 18 | All | 0.000003 |
ORF1ab/nsp15A1-B | 122 | F122del2 | TTT | --N | 1 | 18 | All | 0 |
ORF1ab/nsp15A1-B | 122 | F122del2 | tTT | t-- | 1 | 18 | All | 0 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 14 | 14 | B.1 | 0.000128 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 13 | 13 | AY.103 | 0.000081 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 12 | 12 | AY.33 | 0.000801 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 9 | 11 | B.1 | 0.000082 |
ORF1ab/nsp15A1-B | 122 | F122L | ttT | ttA | 1 | 11 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 122 | F122L | ttT | ttG | 1 | 11 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 8 | 8 | B.1.1.28 | 0.00249 |
ORF1ab/nsp15A1-B | 122 | F122S | tTt | tCt | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp15A1-B | 122 | F122I | Ttt | Att | 5 | 7 | All | 0.000001 |
ORF1ab/nsp15A1-B | 122 | F122I | TtT | AtA | 2 | 7 | All | 0 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 7 | 7 | AY.4.2 | 0.000152 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp15A1-B | 122 | F122V | Ttt | Gtt | 3 | 6 | All | 0.000001 |
ORF1ab/nsp15A1-B | 122 | F122V | TtT | GtG | 2 | 6 | All | 0 |
ORF1ab/nsp15A1-B | 122 | F122V | TtT | GtC | 1 | 6 | All | 0 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp15A1-B | 122 | F122S | tTt | tCt | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 6 | 6 | P.1.7 | 0.001916 |
ORF1ab/nsp15A1-B | 122 | F122C | tTt | tGt | 5 | 5 | All | 0.000001 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 5 | 5 | AY.54 | 0.000477 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 5 | 5 | B.1.1.39 | 0.002548 |
ORF1ab/nsp15A1-B | 122 | F122del2 | TTt | --t | 4 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp15A1-B | 122 | F122del2 | tTT | t-- | 1 | 5 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 5 | 5 | B.1.127 | 0.010989 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 4 | 4 | A.2.5.3 | 0.041237 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp15A1-B | 122 | F122S | tTt | tCt | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 3 | 4 | B.1.2 | 0.000026 |
ORF1ab/nsp15A1-B | 122 | F122L | ttT | ttG | 1 | 4 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp15A1-B | 122 | F122S | tTt | tCt | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp15A1-B | 122 | F122del2 | TTt | --t | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp15A1-B | 122 | F122L | ttT | ttG | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 122 | F122L | ttT | ttA | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 122 | F122L | ttT | ttG | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 122 | F122I | TtT | AtA | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp15A1-B | 122 | F122I | Ttt | Att | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 2 | 3 | B.1.160 | 0.000062 |
ORF1ab/nsp15A1-B | 122 | F122L | TtT | CtC | 1 | 3 | B.1.160 | 0.000031 |
ORF1ab/nsp15A1-B | 122 | F122S | tTt | tCt | 2 | 3 | B.1.2 | 0.000018 |
ORF1ab/nsp15A1-B | 122 | F122S | TTt | AGt | 1 | 3 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 3 | 3 | B.1.377 | 0.013699 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp15A1-B | 122 | F122S | tTt | tCt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp15A1-B | 122 | F122S | tTT | tCG | 2 | 2 | 0.111111 | |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp15A1-B | 122 | F122C | tTt | tGt | 2 | 2 | 0.111111 | |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp15A1-B | 122 | F122del2 | TTt | --t | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp15A1-B | 122 | F122V | Ttt | Gtt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp15A1-B | 122 | F122S | tTt | tCt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp15A1-B | 122 | F122S | tTt | tCt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 2 | 2 | AY.78 | 0.003082 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 2 | 2 | B.1.1.232 | 0.00363 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 2 | 2 | B.1.1.297 | 0.004474 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 2 | 2 | B.1.324 | 0.00321 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp15A1-B | 122 | F122S | tTt | tCt | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp15A1-B | 122 | F122L | ttT | ttG | 1 | 1 | AC.1 | 0.037037 |
ORF1ab/nsp15A1-B | 122 | F122N | TTT | AAC | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 122 | F122Y | tTt | tAt | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp15A1-B | 122 | F122S | tTt | tCt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp15A1-B | 122 | F122Y | tTt | tAt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp15A1-B | 122 | F122S | tTt | tCt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp15A1-B | 122 | F122S | tTt | tCt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp15A1-B | 122 | F122V | TtT | GtG | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp15A1-B | 122 | F122I | Ttt | Att | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp15A1-B | 122 | F122S | tTt | tCt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 122 | F122V | TtT | GtC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp15A1-B | 122 | F122del2 | TTt | --t | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp15A1-B | 122 | F122S | tTt | tCt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp15A1-B | 122 | F122N | TTT | AAC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 122 | F122I | Ttt | Att | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp15A1-B | 122 | F122del2 | TTt | --t | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp15A1-B | 122 | F122C | tTt | tGt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp15A1-B | 122 | F122S | tTt | tCt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B.1.1.404 | 0.015873 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp15A1-B | 122 | F122V | TtT | GtG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 122 | F122del2 | TTt | --t | 1 | 1 | B.1.110 | 0.004525 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp15A1-B | 122 | F122C | tTt | tGt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp15A1-B | 122 | F122L | ttT | ttG | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp15A1-B | 122 | F122del2 | TTt | --t | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 122 | F122C | tTt | tGt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 122 | F122I | Ttt | Att | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp15A1-B | 122 | F122L | ttT | ttA | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp15A1-B | 122 | F122S | tTt | tCt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp15A1-B | 122 | F122S | tTt | tCt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp15A1-B | 122 | F122S | tTt | tCt | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp15A1-B | 122 | F122S | tTt | tCt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 122 | F122del2 | TTT | --N | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp15A1-B | 122 | F122del2 | TTt | --t | 1 | 1 | B.1.562 | 0.018519 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B.1.571 | 0.009709 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp15A1-B | 122 | F122del2 | TTt | --t | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp15A1-B | 122 | F122V | Ttt | Gtt | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp15A1-B | 122 | F122F | ttT | ttC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp15A1-B | 122 | F122L | ttT | ttG | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp15A1-B | 122 | F122I | Ttt | Att | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp15A1-B | 122 | F122del2 | TTt | --t | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp15A1-B | 122 | F122del1 | Ttt | -tt | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp15A1-B | 122 | F122L | Ttt | Ctt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp15A1-B | 122 | F122del | TTT | --- | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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