CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 121

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp15A1-B	121	V121V	V6573V	syn	gtC	gtT	22311	22208	0.995383	19981-19983
ORF1ab/nsp15A1-B	121	V121V	V6573V	syn	gtC	gtA	22311	98	0.00439245	19981-19983
ORF1ab/nsp15A1-B	121	V121V	V6573V	syn	gtC	gtG	22311	5	0.000224105	19981-19983
ORF1ab/nsp15A1-B	121	V121I	V6573I	nonsyn	Gtc	Atc	866	864	0.997691	19981-19983
ORF1ab/nsp15A1-B	121	V121I	V6573I	nonsyn	GtC	AtT	866	1	0.00115473	19981-19983
ORF1ab/nsp15A1-B	121	V121I	V6573I	nonsyn	GtC	AtA	866	1	0.00115473	19981-19983
ORF1ab/nsp15A1-B	121	V121del	V6573del	del	GTC	---	176	176	1	19981-19983
ORF1ab/nsp15A1-B	121	V121A	V6573A	nonsyn	gTc	gCc	33	26	0.787879	19981-19983
ORF1ab/nsp15A1-B	121	V121A	V6573A	nonsyn	gTC	gCT	33	4	0.121212	19981-19983
ORF1ab/nsp15A1-B	121	V121A	V6573A	nonsyn	gTC	gCA	33	2	0.0606061	19981-19983
ORF1ab/nsp15A1-B	121	V121A	V6573A	nonsyn	gTC	gCG	33	1	0.030303	19981-19983
ORF1ab/nsp15A1-B	121	V121del1	V6573del1	del	gtC	gt-	30	28	0.933333	19981-19983
ORF1ab/nsp15A1-B	121	V121del1	V6573del1	del	GTC	-NN	30	1	0.0333333	19981-19983
ORF1ab/nsp15A1-B	121	V121del1	V6573del1	del	GtC	-tN	30	1	0.0333333	19981-19983
ORF1ab/nsp15A1-B	121	V121F	V6573F	nonsyn	Gtc	Ttc	24	16	0.666667	19981-19983
ORF1ab/nsp15A1-B	121	V121F	V6573F	nonsyn	GtC	TtT	24	8	0.333333	19981-19983
ORF1ab/nsp15A1-B	121	V121L	V6573L	nonsyn	Gtc	Ctc	13	9	0.692308	19981-19983
ORF1ab/nsp15A1-B	121	V121L	V6573L	nonsyn	GtC	CtT	13	3	0.230769	19981-19983
ORF1ab/nsp15A1-B	121	V121L	V6573L	nonsyn	GtC	CtG	13	1	0.0769231	19981-19983
ORF1ab/nsp15A1-B	121	V121D	V6573D	nonsyn	gTc	gAc	7	7	1	19981-19983
ORF1ab/nsp15A1-B	121	V121N	V6573N	nonsyn	GTc	AAc	3	3	1	19981-19983
ORF1ab/nsp15A1-B	121	V121P	V6573P	nonsyn	GTc	CCc	3	2	0.666667	19981-19983
ORF1ab/nsp15A1-B	121	V121G	V6573G	nonsyn	gTC	gGT	3	2	0.666667	19981-19983
ORF1ab/nsp15A1-B	121	V121del2	V6573del2	del	GTc	--c	3	1	0.333333	19981-19983
ORF1ab/nsp15A1-B	121	V121P	V6573P	nonsyn	GTC	CCG	3	1	0.333333	19981-19983
ORF1ab/nsp15A1-B	121	V121G	V6573G	nonsyn	gTc	gGc	3	1	0.333333	19981-19983
ORF1ab/nsp15A1-B	121	V121del2	V6573del2	del	gTC	g--	3	1	0.333333	19981-19983
ORF1ab/nsp15A1-B	121	V121del2	V6573del2	del	GTC	--N	3	1	0.333333	19981-19983
ORF1ab/nsp15A1-B	121	V121H	V6573H	nonsyn	GTc	CAc	2	1	0.5	19981-19983
ORF1ab/nsp15A1-B	121	V121H	V6573H	nonsyn	GTC	CAT	2	1	0.5	19981-19983
ORF1ab/nsp15A1-B	121	V121S	V6573S	nonsyn	GTc	AGc	2	1	0.5	19981-19983
ORF1ab/nsp15A1-B	121	V121S	V6573S	nonsyn	GTC	TCT	2	1	0.5	19981-19983
ORF1ab/nsp15A1-B	121	V121T	V6573T	nonsyn	GTc	ACc	1	1	1	19981-19983
ORF1ab/nsp15A1-B	121	V121C	V6573C	nonsyn	GTC	TGT	1	1	1	19981-19983
ORF1ab/nsp15A1-B	121	V121Q	V6573Q	nonsyn	GTC	CAA	1	1	1	19981-19983
ORF1ab/nsp15A1-B	121	V121R	V6573R	nonsyn	GTC	CGT	1	1	1	19981-19983

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	22208	22311	All	0.004248
ORF1ab/nsp15A1-B	121	V121V	gtC	gtA	98	22311	All	0.000019
ORF1ab/nsp15A1-B	121	V121V	gtC	gtG	5	22311	All	0.000001
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3383	3395	B.1.1.7	0.003029
ORF1ab/nsp15A1-B	121	V121V	gtC	gtA	12	3395	B.1.1.7	0.000011
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3149	3159	AY.4	0.004901
ORF1ab/nsp15A1-B	121	V121V	gtC	gtA	10	3159	AY.4	0.000016
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2874	2874	AY.12	0.908344
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1653	1655	B.1.617.2	0.006224
ORF1ab/nsp15A1-B	121	V121V	gtC	gtA	2	1655	B.1.617.2	0.000008
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1021	1021	AY.44	0.006215
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	864	866	All	0.000165
ORF1ab/nsp15A1-B	121	V121I	GtC	AtA	1	866	All	0
ORF1ab/nsp15A1-B	121	V121I	GtC	AtT	1	866	All	0
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	795	796	AY.43	0.003522
ORF1ab/nsp15A1-B	121	V121V	gtC	gtA	1	796	AY.43	0.000004
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	777	777	AY.4.2	0.016852
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	640	672	B.1.2	0.005635
ORF1ab/nsp15A1-B	121	V121V	gtC	gtA	31	672	B.1.2	0.000273
ORF1ab/nsp15A1-B	121	V121V	gtC	gtG	1	672	B.1.2	0.000009
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	649	649	AY.3	0.006455
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	481	481	B.1.438.1	0.051593
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	449	452	AY.103	0.002788
ORF1ab/nsp15A1-B	121	V121V	gtC	gtA	3	452	AY.103	0.000019
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	427	427	AY.25	0.002568
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	399	399	AY.46.6	0.028811
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	396	396	AY.29	0.006246
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	363	363	B.1.258.22	0.968
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	348	348	B.1.427	0.017573
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	265	265	AY.39	0.006549
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	206	206	B.1.243	0.014334
ORF1ab/nsp15A1-B	121	V121del	GTC	---	176	176	All	0.000034
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	148	148	B.1	0.001356
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	147	147	B.1.1	0.002667
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	144	145	B.1.177	0.001896
ORF1ab/nsp15A1-B	121	V121V	gtC	gtA	1	145	B.1.177	0.000013
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	140	140	AY.47	0.004355
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	130	130	AY.99.2	0.01198
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	125	125	P.1	0.001969
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	119	119	AY.102	0.003155
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	104	104	AY.6	0.004277
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	100	100	AY.61	0.010478
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	97	97	B.1.526	0.00228
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	92	92	B.1.429	0.002165
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	91	91	AY.100	0.004187
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	88	88	B.1.36.36	0.05298
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	79	79	AY.99	0.082896
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	75	75	AY.5	0.001549
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	71	71	B.1	0.00065
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	66	66	AY.121	0.008931
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	56	56	C.35	0.043344
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	54	54	AY.9.2	0.001983
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	52	52	AY.26	0.001472
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	50	50	AY.90	0.034223
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	50	50	B.1.36.37	0.138889
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	36	49	R.1	0.00324
ORF1ab/nsp15A1-B	121	V121V	gtC	gtA	13	49	R.1	0.00117
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	48	48	AY.117	0.004057
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	48	48	AY.33	0.003205
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	45	45	B.1.243	0.003131
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	44	44	AY.20	0.00171
ORF1ab/nsp15A1-B	121	V121del	GTC	---	44	44	B.1.1.7	0.000039
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	44	44	B.1.258	0.002928
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	43	44	B.1.351	0.001278
ORF1ab/nsp15A1-B	121	V121V	gtC	gtA	1	44	B.1.351	0.00003
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	43	43	AY.119	0.001518
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	43	43	B.1.1.28	0.013383
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	41	41	B.1.160	0.001279
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	41	41	D.2	0.003077
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	39	39	AY.120	0.00145
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	39	39	AY.84	0.01706
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	38	38	B.1.221	0.002699
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	37	37	AY.42	0.001489
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	37	37	B.1.1.7	0.000033
ORF1ab/nsp15A1-B	121	V121del	GTC	---	37	37	B.1.2	0.000326
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	35	37	B.1.617.1	0.004514
ORF1ab/nsp15A1-B	121	V121V	gtC	gtA	2	37	B.1.617.1	0.000258
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	30	36	AY.39.1	0.001188
ORF1ab/nsp15A1-B	121	V121V	gtC	gtA	6	36	AY.39.1	0.000238
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	36	36	AY.98	0.002844
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	35	35	AY.116	0.010037
ORF1ab/nsp15A1-B	121	V121A	gTc	gCc	26	33	All	0.000005
ORF1ab/nsp15A1-B	121	V121A	gTC	gCT	4	33	All	0.000001
ORF1ab/nsp15A1-B	121	V121A	gTC	gCA	2	33	All	0
ORF1ab/nsp15A1-B	121	V121A	gTC	gCG	1	33	All	0
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	33	33	AY.111	0.006044
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	33	33	AY.46	0.003435
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	33	33	C.9	1
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	32	32	B.1.2	0.000282
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	31	31	AY.118	0.001942
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	31	31	B.1.621	0.002744
ORF1ab/nsp15A1-B	121	V121del1	gtC	gt-	28	30	All	0.000005
ORF1ab/nsp15A1-B	121	V121del1	GtC	-tN	1	30	All	0
ORF1ab/nsp15A1-B	121	V121del1	GTC	-NN	1	30	All	0
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	28	29	AY.23	0.001953
ORF1ab/nsp15A1-B	121	V121V	gtC	gtA	1	29	AY.23	0.00007
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	28	29	AY.36	0.00415
ORF1ab/nsp15A1-B	121	V121V	gtC	gtA	1	29	AY.36	0.000148
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	29	29	B.1.258.17	0.003015
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	28	28	AY.3.1	0.002387
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	27	27	B.1.1.214	0.001497
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	26	26	AY.13	0.004185
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	25	25	AY.54	0.002384
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	25	25	B.1.1.519	0.000993
ORF1ab/nsp15A1-B	121	V121F	Gtc	Ttc	16	24	All	0.000003
ORF1ab/nsp15A1-B	121	V121F	GtC	TtT	8	24	All	0.000002
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	24	24	AY.64	0.014286
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	24	24	AY.98.1	0.001162
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	23	23	AY.11	0.03079
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	22	22	AY.116.1	0.006851
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	22	22	AY.45	0.002677
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	21	21	AY.75.1	0.003787
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	16	21	AY.85	0.006835
ORF1ab/nsp15A1-B	121	V121V	gtC	gtA	5	21	AY.85	0.002136
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	20	20	AY.75	0.00112
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	20	20	AY.9.1	0.001674
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	20	20	AY.94	0.008853
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	19	19	A.5	0.036538
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	19	19	AY.9	0.001284
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	18	18	AY.92	0.005171
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	18	18	B.1.1.33	0.007576
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	18	18	B.1.160.29	0.075949
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	18	18	B.1.177.12	0.002731
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	18	18	B.1.177.81	0.003408
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	18	18	B.1.234	0.002375
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	18	18	C.37	0.002089
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	17	17	B.1.243.2	0.246377
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	17	17	B.1.596	0.001481
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	16	16	AY.41	0.004703
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	16	16	AY.42	0.000644
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	16	16	AY.74	0.00185
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	16	16	B.1.1.244	0.246154
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	15	15	AY.4.5	0.001612
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	15	15	AY.69	0.0028
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	15	15	B.1.110.3	0.010776
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	14	14	AY.27	0.000906
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	12	14	AY.46.4	0.001974
ORF1ab/nsp15A1-B	121	V121V	gtC	gtG	2	14	AY.46.4	0.000329
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	14	14	P.1.15	0.003253
ORF1ab/nsp15A1-B	121	V121L	Gtc	Ctc	9	13	All	0.000002
ORF1ab/nsp15A1-B	121	V121L	GtC	CtT	3	13	All	0.000001
ORF1ab/nsp15A1-B	121	V121L	GtC	CtG	1	13	All	0
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	13	13	P.1.10	0.003503
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	12	12	AY.16.1	0.005639
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	12	12	B.1.351.5	0.007194
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	12	12	B.1.409	0.009375
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	9	11	AY.113	0.001282
ORF1ab/nsp15A1-B	121	V121V	gtC	gtA	1	11	AY.113	0.000142
ORF1ab/nsp15A1-B	121	V121V	gtC	gtG	1	11	AY.113	0.000142
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	11	11	AY.34.1	0.005609
ORF1ab/nsp15A1-B	121	V121del1	gtC	gt-	11	11	AY.46.6	0.000794
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	11	11	B.1.637	0.000804
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	10	10	AY.34	0.00097
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	10	10	AY.93	0.002731
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	10	10	B.1.617.2	0.000038
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	10	10	P.1.14	0.000478
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	9	9	A	0.003483
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	9	9	A.2.5	0.004491
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	9	9	AY.14	0.000792
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	9	9	AY.5.3	0.003036
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	9	9	AY.55	0.008257
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	9	9	AY.7.1	0.001014
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	9	9	B.1.1.153	0.009858
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	9	9	B.1.1.50	0.00611
ORF1ab/nsp15A1-B	121	V121del1	gtC	gt-	7	9	B.1.1.7	0.000006
ORF1ab/nsp15A1-B	121	V121del1	GTC	-NN	1	9	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	121	V121del1	GtC	-tN	1	9	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	9	9	B.1.214.3	0.064286
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	9	9	B.1.543	0.09
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	9	9	B.1.582	0.004416
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	9	9	B.40	0.003279
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	8	8	AY.106	0.002679
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	8	8	AY.4.2.1	0.001192
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	8	8	AY.65	0.004264
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	8	8	B.1.1.132	0.119403
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	8	8	B.1.1.285	0.052288
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	8	8	B.1.1.374	0.019002
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	8	8	B.1.36	0.001167
ORF1ab/nsp15A1-B	121	V121del	GTC	---	8	8	B.1.617.2	0.00003
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	7	7	AD.2	0.001533
ORF1ab/nsp15A1-B	121	V121D	gTc	gAc	7	7	All	0.000001
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	7	7	AY.114	0.001618
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	7	7	AY.29.1	0.001544
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	6	7	AY.3	0.00006
ORF1ab/nsp15A1-B	121	V121I	GtC	AtT	1	7	AY.3	0.00001
ORF1ab/nsp15A1-B	121	V121F	Gtc	Ttc	6	7	AY.4	0.000009
ORF1ab/nsp15A1-B	121	V121F	GtC	TtT	1	7	AY.4	0.000002
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	7	7	AY.4.4	0.002864
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	7	7	AY.44	0.000043
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	7	7	AY.7.2	0.003915
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	7	7	B.1.1.25	0.00398
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	7	7	B.1.336	0.017073
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	6	7	B.1.351.2	0.001815
ORF1ab/nsp15A1-B	121	V121V	gtC	gtA	1	7	B.1.351.2	0.000303
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	7	7	B.1.596	0.00061
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	7	7	C.36.3	0.003971
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	7	7	P.1.7	0.002235
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	7	7	Q.4	0.003183
ORF1ab/nsp15A1-B	121	V121A	gTc	gCc	6	6	AY.25	0.000036
ORF1ab/nsp15A1-B	121	V121A	gTc	gCc	6	6	AY.4	0.000009
ORF1ab/nsp15A1-B	121	V121del	GTC	---	6	6	B.1	0.000055
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	5	6	B.1.1.1	0.001633
ORF1ab/nsp15A1-B	121	V121V	gtC	gtA	1	6	B.1.1.1	0.000327
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	6	6	B.1.1.298	0.005172
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	6	6	B.1.210	0.012793
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	6	6	B.1.466.2	0.002347
ORF1ab/nsp15A1-B	121	V121del	GTC	---	6	6	B.1.526	0.000141
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	6	6	P.1.4	0.005859
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	5	5	AY.105	0.003215
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	5	5	AY.110	0.000563
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	5	5	AY.46.4	0.000823
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	5	5	AY.62	0.002179
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	5	5	AY.67	0.002321
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	5	5	AY.87	0.004163
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	5	5	AY.95	0.003805
ORF1ab/nsp15A1-B	121	V121F	Gtc	Ttc	4	5	B.1	0.000037
ORF1ab/nsp15A1-B	121	V121F	GtC	TtT	1	5	B.1	0.000009
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	5	5	B.1.1.280	0.015432
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	5	5	B.1.177.77	0.003631
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	5	5	B.1.177.86	0.000917
ORF1ab/nsp15A1-B	121	V121del	GTC	---	5	5	B.1.351	0.000149
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	5	5	B.1.411	0.018519
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	5	5	B.1.499	0.005252
ORF1ab/nsp15A1-B	121	V121V	gtC	gtA	3	5	B.1.575	0.00091
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	5	B.1.575	0.000607
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	5	5	B.1.595	0.001305
ORF1ab/nsp15A1-B	121	V121del	GTC	---	5	5	B.1.596	0.000436
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	5	5	B.1.623	0.002682
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	5	5	P.2	0.000933
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	4	4	A.21	0.01108
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	4	4	A.23.1	0.002817
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	4	4	AY.109	0.002959
ORF1ab/nsp15A1-B	121	V121del	GTC	---	4	4	AY.25	0.000024
ORF1ab/nsp15A1-B	121	V121del	GTC	---	4	4	AY.3	0.00004
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	4	4	AY.32	0.00213
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	4	4	AY.37	0.001264
ORF1ab/nsp15A1-B	121	V121del1	gtC	gt-	4	4	AY.39	0.000099
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	4	4	AY.4	0.000006
ORF1ab/nsp15A1-B	121	V121del	GTC	---	4	4	AY.43	0.000018
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	4	4	AY.46.2	0.002541
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	4	4	AY.5.4	0.001107
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	4	4	AY.59	0.002119
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	4	4	B	0.000511
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	4	4	B.1.1	0.000073
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	4	4	B.1.1.284	0.00043
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	4	4	B.1.1.306	0.001754
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	4	4	B.1.177.15	0.002524
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	4	4	B.1.177.21	0.000306
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	4	4	B.1.265	0.005083
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	4	4	B.1.311	0.001098
ORF1ab/nsp15A1-B	121	V121del	GTC	---	4	4	B.1.429	0.000094
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	4	4	B.1.459	0.016327
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	4	4	B.1.619.1	0.002566
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	4	4	Q.8	0.00066
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	A.2.3	0.014218
ORF1ab/nsp15A1-B	121	V121N	GTc	AAc	3	3	All	0.000001
ORF1ab/nsp15A1-B	121	V121G	gTC	gGT	2	3	All	0
ORF1ab/nsp15A1-B	121	V121P	GTc	CCc	2	3	All	0
ORF1ab/nsp15A1-B	121	V121del2	GTc	--c	1	3	All	0
ORF1ab/nsp15A1-B	121	V121del2	gTC	g--	1	3	All	0
ORF1ab/nsp15A1-B	121	V121G	gTc	gGc	1	3	All	0
ORF1ab/nsp15A1-B	121	V121P	GTC	CCG	1	3	All	0
ORF1ab/nsp15A1-B	121	V121del2	GTC	--N	1	3	All	0
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	3	3	AY.103	0.000019
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	AY.120.2	0.003856
ORF1ab/nsp15A1-B	121	V121del	GTC	---	3	3	AY.121	0.000406
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	AY.21	0.005693
ORF1ab/nsp15A1-B	121	V121F	GtC	TtT	3	3	AY.3	0.00003
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	AY.30	0.001187
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	AY.38	0.001498
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	AY.39.1.1	0.002174
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	AY.40	0.002893
ORF1ab/nsp15A1-B	121	V121del	GTC	---	3	3	AY.44	0.000018
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	AY.46.3	0.002801
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	AY.46.5	0.000595
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	3	3	AY.54	0.000286
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	AY.7	0.000588
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	AY.70	0.000626
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	AY.71	0.001425
ORF1ab/nsp15A1-B	121	V121del	GTC	---	3	3	B.1.1	0.000054
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	B.1.1.141	0.006036
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	B.1.1.216	0.002671
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	B.1.1.222	0.000612
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	B.1.1.311	0.001074
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	B.1.1.334	0.04918
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	B.1.1.337	0.010791
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	B.1.1.348	0.002389
ORF1ab/nsp15A1-B	121	V121A	gTC	gCA	2	3	B.1.1.7	0.000002
ORF1ab/nsp15A1-B	121	V121A	gTc	gCc	1	3	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	B.1.160.23	0.014493
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	B.1.177.57	0.000843
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	B.1.177.75	0.003122
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	3	3	B.1.234	0.000396
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	B.1.36.38	0.004926
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	B.1.416	0.003807
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	B.1.509	0.002597
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	B.1.517	0.001281
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	B.1.561	0.001191
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	B.1.580	0.012195
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	B.1.588	0.00273
ORF1ab/nsp15A1-B	121	V121F	GtC	TtT	2	3	B.1.617.2	0.000008
ORF1ab/nsp15A1-B	121	V121F	Gtc	Ttc	1	3	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	B.1.627	0.006061
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	B.1.628	0.001057
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	3	3	P.1	0.000047
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	P.1.12	0.001452
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	3	3	Q.1	0.000379
ORF1ab/nsp15A1-B	121	V121del	GTC	---	2	2		0.111111
ORF1ab/nsp15A1-B	121	V121A	gTC	gCT	2	2		0.111111
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	A.27	0.003311
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	AE.8	0.000978
ORF1ab/nsp15A1-B	121	V121S	GTc	AGc	1	2	All	0
ORF1ab/nsp15A1-B	121	V121H	GTC	CAT	1	2	All	0
ORF1ab/nsp15A1-B	121	V121H	GTc	CAc	1	2	All	0
ORF1ab/nsp15A1-B	121	V121S	GTC	TCT	1	2	All	0
ORF1ab/nsp15A1-B	121	V121P	GTc	CCc	1	2	AY.113	0.000142
ORF1ab/nsp15A1-B	121	V121P	GTC	CCG	1	2	AY.113	0.000142
ORF1ab/nsp15A1-B	121	V121A	gTc	gCc	1	2	AY.113	0.000142
ORF1ab/nsp15A1-B	121	V121L	Gtc	Ctc	1	2	AY.113	0.000142
ORF1ab/nsp15A1-B	121	V121L	GtC	CtG	1	2	AY.113	0.000142
ORF1ab/nsp15A1-B	121	V121A	gTC	gCG	1	2	AY.113	0.000142
ORF1ab/nsp15A1-B	121	V121del	GTC	---	2	2	AY.120	0.000074
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	AY.120.2.1	0.000997
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	AY.19	0.002281
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	AY.2	0.000712
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	AY.23.1	0.000835
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	AY.28	0.003781
ORF1ab/nsp15A1-B	121	V121A	gTc	gCc	2	2	AY.3	0.00002
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	AY.35	0.000466
ORF1ab/nsp15A1-B	121	V121del	GTC	---	2	2	AY.4	0.000003
ORF1ab/nsp15A1-B	121	V121L	Gtc	Ctc	1	2	AY.4	0.000002
ORF1ab/nsp15A1-B	121	V121L	GtC	CtT	1	2	AY.4	0.000002
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	2	2	AY.4.2	0.000043
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	2	AY.43	0.000004
ORF1ab/nsp15A1-B	121	V121I	GtC	AtA	1	2	AY.43	0.000004
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	AY.48	0.00093
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	AY.50	0.001599
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	AY.56	0.00321
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	AY.57	0.001312
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	AY.58	0.001815
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	AY.72	0.002721
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	AY.76	0.009662
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	AY.79	0.002421
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	2	2	AY.85	0.000854
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	AY.91	0.001461
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	AZ.2	0.001642
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.1.121	0.004854
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.1.155	0.142857
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.1.170	0.002494
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.1.186	0.006873
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.1.189	0.003026
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.1.291	0.001485
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.1.326	0.003521
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.1.37	0.000386
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.1.413	0.013793
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.1.46	0.008734
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.1.63	0.000772
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.1.70	0.000682
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.1.8	0.007168
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.1.89	0.012121
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.1.93	0.051282
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.128	0.001271
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.139	0.001466
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.177.43	0.002954
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.177.54	0.001213
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.177.60	0.000437
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.177.65	0.001331
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.177.67	0.015267
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.177.79	0.004684
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.177.80	0.003824
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.177.82	0.000955
ORF1ab/nsp15A1-B	121	V121L	Gtc	Ctc	2	2	B.1.2	0.000018
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.206	0.001631
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.214.2	0.001199
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.240	0.000431
ORF1ab/nsp15A1-B	121	V121A	gTc	gCc	1	2	B.1.240	0.000216
ORF1ab/nsp15A1-B	121	V121A	gTC	gCT	1	2	B.1.240	0.000216
ORF1ab/nsp15A1-B	121	V121del	GTC	---	2	2	B.1.258	0.000133
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.320	0.002491
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	2	B.1.329	0.000608
ORF1ab/nsp15A1-B	121	V121V	gtC	gtA	1	2	B.1.329	0.000608
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	2	B.1.351.3	0.000876
ORF1ab/nsp15A1-B	121	V121V	gtC	gtA	1	2	B.1.351.3	0.000876
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.36.17	0.000988
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.36.29	0.001035
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.400	0.000858
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	2	2	B.1.429	0.000047
ORF1ab/nsp15A1-B	121	V121del	GTC	---	2	2	B.1.517	0.000854
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.525	0.000226
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.532	0.012422
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.1.618	0.008065
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	B.41	0.016
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	2	C.36	0.000911
ORF1ab/nsp15A1-B	121	V121V	gtC	gtG	1	2	C.36	0.000911
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	P.1.1	0.000635
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	P.1.17	0.000324
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	P.3	0.00319
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	2	2	Q.3	0.00029
ORF1ab/nsp15A1-B	121	V121A	gTc	gCc	1	1	A	0.000387
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	A.2.2	0.001689
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	A.2.4	0.003367
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	A.2.5.1	0.004808
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	AA.1	0.007246
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	AE.5	0.018519
ORF1ab/nsp15A1-B	121	V121T	GTc	ACc	1	1	All	0
ORF1ab/nsp15A1-B	121	V121C	GTC	TGT	1	1	All	0
ORF1ab/nsp15A1-B	121	V121R	GTC	CGT	1	1	All	0
ORF1ab/nsp15A1-B	121	V121Q	GTC	CAA	1	1	All	0
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	AM.4	0.003571
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	AP.1	0.001502
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	AU.3	0.00211
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	AY.1	0.000396
ORF1ab/nsp15A1-B	121	V121A	gTc	gCc	1	1	AY.100	0.000046
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	AY.100	0.000046
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	AY.101	0.00049
ORF1ab/nsp15A1-B	121	V121A	gTc	gCc	1	1	AY.103	0.000006
ORF1ab/nsp15A1-B	121	V121del1	gtC	gt-	1	1	AY.103	0.000006
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	AY.107	0.000466
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	AY.108	0.001103
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	AY.115	0.005208
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	AY.117	0.000085
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	AY.119	0.000035
ORF1ab/nsp15A1-B	121	V121F	GtC	TtT	1	1	AY.12	0.000316
ORF1ab/nsp15A1-B	121	V121del1	gtC	gt-	1	1	AY.12	0.000316
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	AY.120	0.000037
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	AY.120.1	0.000321
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	AY.120.1	0.000321
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	AY.15	0.002222
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	AY.16	0.00038
ORF1ab/nsp15A1-B	121	V121D	gTc	gAc	1	1	AY.20	0.000039
ORF1ab/nsp15A1-B	121	V121L	Gtc	Ctc	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	AY.28	0.00189
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	AY.29	0.000016
ORF1ab/nsp15A1-B	121	V121Q	GTC	CAA	1	1	AY.29	0.000016
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	AY.29	0.000016
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	AY.39.2	0.001541
ORF1ab/nsp15A1-B	121	V121F	Gtc	Ttc	1	1	AY.4.2	0.000022
ORF1ab/nsp15A1-B	121	V121F	Gtc	Ttc	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	121	V121H	GTC	CAT	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	121	V121del1	gtC	gt-	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	121	V121F	Gtc	Ttc	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	121	V121R	GTC	CGT	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	AY.46.3	0.000934
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	AY.5.3	0.000337
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	AY.52	0.000814
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	AY.53	0.000288
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	AY.55	0.000917
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	AY.73	0.000665
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	AY.73	0.000665
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	AY.77	0.001127
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	AY.78	0.001541
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	AY.78	0.001541
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	AY.8	0.000606
ORF1ab/nsp15A1-B	121	V121F	Gtc	Ttc	1	1	AY.84	0.000437
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	AY.88	0.000884
ORF1ab/nsp15A1-B	121	V121A	gTC	gCT	1	1	AY.9.2	0.000037
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	AY.9.2.1	0.001976
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	AY.99	0.001049
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	AY.99.1	0.001553
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	AZ.2	0.000821
ORF1ab/nsp15A1-B	121	V121L	Gtc	Ctc	1	1	B	0.000128
ORF1ab/nsp15A1-B	121	V121P	GTc	CCc	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	121	V121H	GTc	CAc	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	121	V121T	GTc	ACc	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	121	V121N	GTc	AAc	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	121	V121G	gTC	gGT	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	121	V121L	Gtc	Ctc	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	121	V121A	gTc	gCc	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	121	V121C	GTC	TGT	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	121	V121D	gTc	gAc	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	121	V121N	GTc	AAc	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	121	V121A	gTc	gCc	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	121	V121D	gTc	gAc	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	121	V121L	GtC	CtT	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.134	0.011364
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.157	0.000913
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	B.1.1.174	0.003378
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.174	0.003378
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	B.1.1.192	0.002309
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.196	0.005714
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	B.1.1.207	0.001182
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.207	0.001182
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.220	0.001859
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.231	0.003096
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.232	0.001815
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.234	0.012048
ORF1ab/nsp15A1-B	121	V121A	gTc	gCc	1	1	B.1.1.240	0.004695
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.253	0.002506
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.263	0.001558
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.265	0.003155
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.269	0.001353
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.279	0.001121
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.289	0.002083
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.294	0.001266
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.301	0.001179
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.302	0.002075
ORF1ab/nsp15A1-B	121	V121G	gTC	gGT	1	1	B.1.1.306	0.000438
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.317	0.000412
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	B.1.1.318	0.000302
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.318	0.000302
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.322	0.008772
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.328	0.016949
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.336	0.016667
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.351	0.002793
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.369	0.000446
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.372	0.000689
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.39	0.00051
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.396	0.045455
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.416	0.000905
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.434	0.000349
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.448	0.002033
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.486	0.001577
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.523	0.001563
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.56	0.017857
ORF1ab/nsp15A1-B	121	V121del2	gTC	g--	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	121	V121S	GTc	AGc	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	121	V121N	GTc	AAc	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	121	V121L	Gtc	Ctc	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.1.71	0.006061
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.105	0.009615
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.140	0.018868
ORF1ab/nsp15A1-B	121	V121D	gTc	gAc	1	1	B.1.160	0.000031
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	B.1.160	0.000031
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.160.25	0.011111
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.177.35	0.000691
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.177.4	0.000211
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.177.5	0.001242
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.177.50	0.004695
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.177.58	0.001332
ORF1ab/nsp15A1-B	121	V121A	gTc	gCc	1	1	B.1.177.73	0.000566
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.177.85	0.005435
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.177.87	0.000728
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	B.1.179	0.003759
ORF1ab/nsp15A1-B	121	V121S	GTC	TCT	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	121	V121del2	GTc	--c	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	121	V121G	gTc	gGc	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	121	V121A	gTc	gCc	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	121	V121del1	gtC	gt-	1	1	B.1.214.2	0.0006
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.22	0.001318
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	B.1.221	0.000071
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	B.1.223	0.002778
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.232	0.000537
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	B.1.234	0.000132
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.237	0.004975
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	B.1.240	0.000216
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.241	0.000812
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	B.1.243	0.00007
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.243.1	0.022222
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	B.1.258	0.000067
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.264.1	0.047619
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.273	0.012987
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.279	0.000514
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.313	0.006579
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.36.18	0.00042
ORF1ab/nsp15A1-B	121	V121del1	gtC	gt-	1	1	B.1.36.2	0.010753
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.36.31	0.001751
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.36.35	0.002604
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.36.37	0.002778
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.36.39	0.002217
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.36.8	0.001
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.369	0.000285
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	B.1.370	0.008
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	B.1.396	0.000706
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.396	0.000706
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.399	0.001934
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	B.1.400	0.000429
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.406	0.006061
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	B.1.409	0.000781
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	B.1.416.1	0.001563
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.422	0.000812
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.425	0.002994
ORF1ab/nsp15A1-B	121	V121L	Gtc	Ctc	1	1	B.1.427	0.00005
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	B.1.427	0.00005
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.443	0.004673
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.453	0.003236
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.456	0.003268
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.465	0.003802
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.468	0.005714
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.469	0.00361
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.490	0.1
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.497	0.000315
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.501	0.007353
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.503	0.002488
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	B.1.524	0.001406
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.524	0.001406
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	B.1.525	0.000113
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.564	0.000426
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.575.1	0.002439
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	B.1.577	0.000687
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	B.1.577	0.000687
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.577	0.000687
ORF1ab/nsp15A1-B	121	V121del2	GTC	--N	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.600	0.005848
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	B.1.602	0.006536
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.602	0.006536
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.609	0.000479
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	B.1.617.1	0.000129
ORF1ab/nsp15A1-B	121	V121del1	gtC	gt-	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	121	V121L	GtC	CtT	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	121	V121A	gTc	gCc	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	121	V121D	gTc	gAc	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	B.1.620	0.000946
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	B.1.621	0.000089
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.625	0.002353
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	B.1.630	0.005236
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.634	0.003425
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.88.1	0.004808
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.1.9.5	0.005682
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.39	0.002331
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.52	0.010101
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	B.55	0.00295
ORF1ab/nsp15A1-B	121	V121D	gTc	gAc	1	1	B.6	0.00091
ORF1ab/nsp15A1-B	121	V121V	gtC	gtA	1	1	C.14	0.004329
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	C.17	0.055556
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	C.37	0.000116
ORF1ab/nsp15A1-B	121	V121D	gTc	gAc	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	121	V121F	Gtc	Ttc	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	N.10	0.029412
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	N.6	0.007092
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	N.9	0.005952
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	P.1	0.000016
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	P.1.11	0.010204
ORF1ab/nsp15A1-B	121	V121I	Gtc	Atc	1	1	P.1.14	0.000048
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	P.1.15	0.000232
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	P.7	0.004367
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	Q.1	0.000126
ORF1ab/nsp15A1-B	121	V121V	gtC	gtT	1	1	Q.2	0.000613
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	Q.2	0.000613
ORF1ab/nsp15A1-B	121	V121del	GTC	---	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.