CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 12

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp15A1-B12K12NK6464NnonsynaaGaaT519451650.99441719654-19656
ORF1ab/nsp15A1-B12K12NK6464NnonsynaaGaaC5194290.0055833719654-19656
ORF1ab/nsp15A1-B12K12RK6464RnonsynaAgaGg211021090.99952619654-19656
ORF1ab/nsp15A1-B12K12RK6464RnonsynAAgCGg211010.00047393419654-19656
ORF1ab/nsp15A1-B12K12KK6464KsynaaGaaA801801119654-19656
ORF1ab/nsp15A1-B12K12EK6464EnonsynAagGag128128119654-19656
ORF1ab/nsp15A1-B12K12TK6464TnonsynaAgaCg6767119654-19656
ORF1ab/nsp15A1-B12K12MK6464MnonsynaAgaTg5050119654-19656
ORF1ab/nsp15A1-B12K12delK6464deldelAAG---2222119654-19656
ORF1ab/nsp15A1-B12K12QK6464QnonsynAagCag1717119654-19656
ORF1ab/nsp15A1-B12K12del1K6464del1delaaGaa-740.57142919654-19656
ORF1ab/nsp15A1-B12K12del1K6464del1delAag-ag730.42857119654-19656
ORF1ab/nsp15A1-B12K12XK6464XnonsynAagTag530.619654-19656
ORF1ab/nsp15A1-B12K12XK6464XnonsynAaGTaA520.419654-19656
ORF1ab/nsp15A1-B12K12del2K6464del2delaAGa--11119654-19656
ORF1ab/nsp15A1-B12K12WK6464WnonsynAAgTGg11119654-19656

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp15A1-B12K12NaaGaaT51655194All0.000988
ORF1ab/nsp15A1-B12K12NaaGaaC295194All0.000006
ORF1ab/nsp15A1-B12K12RaAgaGg21092110All0.000403
ORF1ab/nsp15A1-B12K12RAAgCGg12110All0
ORF1ab/nsp15A1-B12K12RaAgaGg16061606B.1.1770.021147
ORF1ab/nsp15A1-B12K12NaaGaaT10431049AY.40.001623
ORF1ab/nsp15A1-B12K12NaaGaaC61049AY.40.000009
ORF1ab/nsp15A1-B12K12KaaGaaA801801All0.000153
ORF1ab/nsp15A1-B12K12NaaGaaT414414AY.30.004118
ORF1ab/nsp15A1-B12K12NaaGaaT390395B.1.1.70.000349
ORF1ab/nsp15A1-B12K12NaaGaaC5395B.1.1.70.000004
ORF1ab/nsp15A1-B12K12NaaGaaT273273B.1.617.20.001028
ORF1ab/nsp15A1-B12K12NaaGaaT269271AY.430.001192
ORF1ab/nsp15A1-B12K12NaaGaaC2271AY.430.000009
ORF1ab/nsp15A1-B12K12KaaGaaA266266B.1.1.70.000238
ORF1ab/nsp15A1-B12K12NaaGaaT241241AY.250.00145
ORF1ab/nsp15A1-B12K12NaaGaaT207207B.1.20.001823
ORF1ab/nsp15A1-B12K12EAagGag128128All0.000024
ORF1ab/nsp15A1-B12K12RaAgaGg124124B.1.1.70.000111
ORF1ab/nsp15A1-B12K12NaaGaaT114114AY.440.000694
ORF1ab/nsp15A1-B12K12NaaGaaT107108B.1.4270.005403
ORF1ab/nsp15A1-B12K12NaaGaaC1108B.1.4270.00005
ORF1ab/nsp15A1-B12K12NaaGaaT100100AY.50.002065
ORF1ab/nsp15A1-B12K12KaaGaaA9393B.1.1.2140.005157
ORF1ab/nsp15A1-B12K12NaaGaaT8484AY.46.50.016667
ORF1ab/nsp15A1-B12K12RaAgaGg8484B.1.6370.006138
ORF1ab/nsp15A1-B12K12NaaGaaT8383AY.1030.000515
ORF1ab/nsp15A1-B12K12NaaGaaT7878B.1.10.001415
ORF1ab/nsp15A1-B12K12TaAgaCg6767All0.000013
ORF1ab/nsp15A1-B12K12NaaGaaT6565B.1.5160.127202
ORF1ab/nsp15A1-B12K12NaaGaaT6262B.1.2580.004126
ORF1ab/nsp15A1-B12K12NaaGaaT5959AY.590.03125
ORF1ab/nsp15A1-B12K12NaaGaaT5959AY.7.10.006649
ORF1ab/nsp15A1-B12K12NaaGaaT5659B.1.5260.001316
ORF1ab/nsp15A1-B12K12NaaGaaC359B.1.5260.000071
ORF1ab/nsp15A1-B12K12RaAgaGg5858B.1.5260.001363
ORF1ab/nsp15A1-B12K12NaaGaaT5355P.10.000835
ORF1ab/nsp15A1-B12K12NaaGaaC255P.10.000032
ORF1ab/nsp15A1-B12K12NaaGaaT5253B.10.000476
ORF1ab/nsp15A1-B12K12NaaGaaC153B.10.000009
ORF1ab/nsp15A1-B12K12EAagGag5252AY.3.10.004433
ORF1ab/nsp15A1-B12K12MaAgaTg5050All0.00001
ORF1ab/nsp15A1-B12K12NaaGaaT4848B.1.4290.001129
ORF1ab/nsp15A1-B12K12NaaGaaT4545B.1.1.2290.258621
ORF1ab/nsp15A1-B12K12NaaGaaT4141N.90.244048
ORF1ab/nsp15A1-B12K12NaaGaaT3838B.1.3510.00113
ORF1ab/nsp15A1-B12K12NaaGaaT3636AY.1020.000955
ORF1ab/nsp15A1-B12K12NaaGaaT3636B.1.1.3470.654545
ORF1ab/nsp15A1-B12K12KaaGaaA3535B.1.1.5070.304348
ORF1ab/nsp15A1-B12K12NaaGaaT3434AY.200.001321
ORF1ab/nsp15A1-B12K12KaaGaaA3434B.1.1770.000448
ORF1ab/nsp15A1-B12K12NaaGaaT3434P.1.170.0055
ORF1ab/nsp15A1-B12K12NaaGaaT3333B.1.1770.000435
ORF1ab/nsp15A1-B12K12NaaGaaT3232B.1.1260.040816
ORF1ab/nsp15A1-B12K12NaaGaaT3131C.36.30.017584
ORF1ab/nsp15A1-B12K12NaaGaaT3030AY.130.004829
ORF1ab/nsp15A1-B12K12NaaGaaT3030AY.470.000933
ORF1ab/nsp15A1-B12K12NaaGaaT3030B.1.360.004377
ORF1ab/nsp15A1-B12K12KaaGaaA2929AY.40.000045
ORF1ab/nsp15A1-B12K12KaaGaaA2929B.1.20.000255
ORF1ab/nsp15A1-B12K12NaaGaaT2828AY.520.022801
ORF1ab/nsp15A1-B12K12NaaGaaT2525B.1.6370.001827
ORF1ab/nsp15A1-B12K12RaAgaGg2424AY.390.000593
ORF1ab/nsp15A1-B12K12NaaGaaT2323AY.140.002024
ORF1ab/nsp15A1-B12K12NaaGaaT2323AY.390.000568
ORF1ab/nsp15A1-B12K12delAAG---2222All0.000004
ORF1ab/nsp15A1-B12K12KaaGaaA2222B.10.000202
ORF1ab/nsp15A1-B12K12NaaGaaT2222B.1.1.280.006847
ORF1ab/nsp15A1-B12K12KaaGaaA2222B.1.177.810.004165
ORF1ab/nsp15A1-B12K12NaaGaaT2222B.1.596.10.205607
ORF1ab/nsp15A1-B12K12RaAgaGg2121B.1.1.4220.954545
ORF1ab/nsp15A1-B12K12KaaGaaA2020AY.39.10.000792
ORF1ab/nsp15A1-B12K12KaaGaaA2020B.1.617.20.000075
ORF1ab/nsp15A1-B12K12KaaGaaA2020C.370.002321
ORF1ab/nsp15A1-B12K12NaaGaaT1919AY.230.001325
ORF1ab/nsp15A1-B12K12NaaGaaT1919AY.610.001991
ORF1ab/nsp15A1-B12K12TaAgaCg1919B.1.617.20.000072
ORF1ab/nsp15A1-B12K12EAagGag1919Q.30.002756
ORF1ab/nsp15A1-B12K12KaaGaaA1818AY.46.50.003571
ORF1ab/nsp15A1-B12K12NaaGaaT1818B.1.1600.000561
ORF1ab/nsp15A1-B12K12NaaGaaT1818B.1.2210.001279
ORF1ab/nsp15A1-B12K12QAagCag1717All0.000003
ORF1ab/nsp15A1-B12K12NaaGaaT1717B.1.177.860.003119
ORF1ab/nsp15A1-B12K12NaaGaaT1717B.1.36.360.010235
ORF1ab/nsp15A1-B12K12NaaGaaT1616AY.330.001068
ORF1ab/nsp15A1-B12K12NaaGaaT1616B.1.617.10.002063
ORF1ab/nsp15A1-B12K12RaAgaGg1616B.1.617.20.00006
ORF1ab/nsp15A1-B12K12MaAgaTg1616B.1.617.20.00006
ORF1ab/nsp15A1-B12K12NaaGaaT1415AY.260.000396
ORF1ab/nsp15A1-B12K12NaaGaaC115AY.260.000028
ORF1ab/nsp15A1-B12K12KaaGaaA1515AY.50.00031
ORF1ab/nsp15A1-B12K12RaAgaGg1515B.10.000137
ORF1ab/nsp15A1-B12K12KaaGaaA1515B.1.2060.012235
ORF1ab/nsp15A1-B12K12NaaGaaT1515P.20.0028
ORF1ab/nsp15A1-B12K12NaaGaaT1414AY.290.000221
ORF1ab/nsp15A1-B12K12NaaGaaT1414B.1.4220.011373
ORF1ab/nsp15A1-B12K12NaaGaaT1313AY.1000.000598
ORF1ab/nsp15A1-B12K12RaAgaGg1313AY.40.00002
ORF1ab/nsp15A1-B12K12RaAgaGg1313AY.900.008898
ORF1ab/nsp15A1-B12K12KaaGaaA1313B.1.1.2250.093525
ORF1ab/nsp15A1-B12K12NaaGaaT1213B.1.1.5190.000477
ORF1ab/nsp15A1-B12K12NaaGaaC113B.1.1.5190.00004
ORF1ab/nsp15A1-B12K12TaAgaCg1313B.1.1.70.000012
ORF1ab/nsp15A1-B12K12NaaGaaT1212AY.3.10.001023
ORF1ab/nsp15A1-B12K12NaaGaaT1212AY.420.000483
ORF1ab/nsp15A1-B12K12MaAgaTg1212B.1.1.2220.002448
ORF1ab/nsp15A1-B12K12RaAgaGg1212B.1.20.000106
ORF1ab/nsp15A1-B12K12NaaGaaT1111B.1.1.100.012263
ORF1ab/nsp15A1-B12K12KaaGaaA1111B.1.4290.000259
ORF1ab/nsp15A1-B12K12EAagGag1111B.1.6370.000804
ORF1ab/nsp15A1-B12K12NaaGaaT1010AY.1190.000353
ORF1ab/nsp15A1-B12K12KaaGaaA1010AY.30.000099
ORF1ab/nsp15A1-B12K12NaaGaaT1010AY.4.20.000217
ORF1ab/nsp15A1-B12K12NaaGaaT1010B.1.177.870.007278
ORF1ab/nsp15A1-B12K12NaaGaaT99AY.1180.000564
ORF1ab/nsp15A1-B12K12KaaGaaA99AY.290.000142
ORF1ab/nsp15A1-B12K12TaAgaCg99AY.430.00004
ORF1ab/nsp15A1-B12K12KaaGaaA99AY.440.000055
ORF1ab/nsp15A1-B12K12NaaGaaT99AY.530.002588
ORF1ab/nsp15A1-B12K12KaaGaaA99B.1.1.5190.000357
ORF1ab/nsp15A1-B12K12NaaGaaT99B.1.1.700.00307
ORF1ab/nsp15A1-B12K12TaAgaCg99B.1.5250.001018
ORF1ab/nsp15A1-B12K12NaaGaaT88AY.46.30.00747
ORF1ab/nsp15A1-B12K12NaaGaaT88AY.540.000763
ORF1ab/nsp15A1-B12K12NaaGaaT88AY.750.000448
ORF1ab/nsp15A1-B12K12NaaGaaT88AY.930.002185
ORF1ab/nsp15A1-B12K12KaaGaaA88B.1.1.2440.123077
ORF1ab/nsp15A1-B12K12NaaGaaT88B.1.177.500.037559
ORF1ab/nsp15A1-B12K12RaAgaGg78P.10.00011
ORF1ab/nsp15A1-B12K12RAAgCGg18P.10.000016
ORF1ab/nsp15A1-B12K12del1aaGaa-47All0.000001
ORF1ab/nsp15A1-B12K12del1Aag-ag37All0.000001
ORF1ab/nsp15A1-B12K12NaaGaaT77AY.160.002658
ORF1ab/nsp15A1-B12K12NaaGaaT67AY.39.10.000238
ORF1ab/nsp15A1-B12K12NaaGaaC17AY.39.10.00004
ORF1ab/nsp15A1-B12K12NaaGaaT77B.1.1.3930.777778
ORF1ab/nsp15A1-B12K12RaAgaGg77B.1.466.20.002739
ORF1ab/nsp15A1-B12K12KaaGaaA77B.1.617.10.000903
ORF1ab/nsp15A1-B12K12NaaGaaT66AY.1200.000223
ORF1ab/nsp15A1-B12K12RaAgaGg66AY.250.000036
ORF1ab/nsp15A1-B12K12MaAgaTg66AY.430.000027
ORF1ab/nsp15A1-B12K12RaAgaGg66AY.440.000037
ORF1ab/nsp15A1-B12K12NaaGaaT66AY.60.000247
ORF1ab/nsp15A1-B12K12NaaGaaT66AY.75.10.001082
ORF1ab/nsp15A1-B12K12NaaGaaT66AY.98.10.000291
ORF1ab/nsp15A1-B12K12NaaGaaT66B.1.1.3110.002149
ORF1ab/nsp15A1-B12K12NaaGaaT66B.1.1.370.001157
ORF1ab/nsp15A1-B12K12NaaGaaT66B.1.1.4060.038961
ORF1ab/nsp15A1-B12K12EAagGag66B.1.1.4340.002091
ORF1ab/nsp15A1-B12K12NaaGaaT66B.1.6280.002114
ORF1ab/nsp15A1-B12K12NaaGaaT66P.1.70.001916
ORF1ab/nsp15A1-B12K12NaaGaaT55AD.20.001095
ORF1ab/nsp15A1-B12K12XAagTag35All0.000001
ORF1ab/nsp15A1-B12K12XAaGTaA25All0
ORF1ab/nsp15A1-B12K12KaaGaaA55AY.1000.00023
ORF1ab/nsp15A1-B12K12NaaGaaT55AY.1060.001674
ORF1ab/nsp15A1-B12K12NaaGaaT55AY.460.00052
ORF1ab/nsp15A1-B12K12NaaGaaT55AY.780.007704
ORF1ab/nsp15A1-B12K12NaaGaaT55B.1.1.2390.16129
ORF1ab/nsp15A1-B12K12NaaGaaT55B.1.1.3060.002192
ORF1ab/nsp15A1-B12K12NaaGaaT55B.1.3690.001426
ORF1ab/nsp15A1-B12K12RaAgaGg55B.1.4290.000118
ORF1ab/nsp15A1-B12K12NaaGaaT55B.1.5960.000436
ORF1ab/nsp15A1-B12K12KaaGaaA55P.1.140.000239
ORF1ab/nsp15A1-B12K12NaaGaaT44AY.1100.000451
ORF1ab/nsp15A1-B12K12NaaGaaT44AY.116.10.001246
ORF1ab/nsp15A1-B12K12NaaGaaT44AY.1170.000338
ORF1ab/nsp15A1-B12K12NaaGaaT44AY.220.008368
ORF1ab/nsp15A1-B12K12NaaGaaT44AY.360.000593
ORF1ab/nsp15A1-B12K12RaAgaGg44AY.430.000018
ORF1ab/nsp15A1-B12K12KaaGaaA44AY.430.000018
ORF1ab/nsp15A1-B12K12NaaGaaT44AY.46.60.000289
ORF1ab/nsp15A1-B12K12NaaGaaT44AY.570.002625
ORF1ab/nsp15A1-B12K12NaaGaaT44AY.7.20.002237
ORF1ab/nsp15A1-B12K12NaaGaaT44AY.980.000316
ORF1ab/nsp15A1-B12K12KaaGaaA44B.1.10.000073
ORF1ab/nsp15A1-B12K12RaAgaGg44B.1.1.2140.000222
ORF1ab/nsp15A1-B12K12RaAgaGg44B.1.1.3180.001207
ORF1ab/nsp15A1-B12K12NaaGaaT44B.1.1.3540.017544
ORF1ab/nsp15A1-B12K12delAAG---44B.1.1.70.000004
ORF1ab/nsp15A1-B12K12EAagGag44B.1.1.70.000004
ORF1ab/nsp15A1-B12K12EAagGag44B.1.20.000035
ORF1ab/nsp15A1-B12K12RaAgaGg44B.1.2210.000284
ORF1ab/nsp15A1-B12K12NaaGaaT44B.1.2340.000528
ORF1ab/nsp15A1-B12K12NaaGaaT44B.1.258.170.000416
ORF1ab/nsp15A1-B12K12KaaGaaA44B.1.2650.005083
ORF1ab/nsp15A1-B12K12NaaGaaT44B.1.36.310.007005
ORF1ab/nsp15A1-B12K12KaaGaaA44B.1.5260.000094
ORF1ab/nsp15A1-B12K12KaaGaaA44B.1.6280.001409
ORF1ab/nsp15A1-B12K12RaAgaGg44C.370.000464
ORF1ab/nsp15A1-B12K12RaAgaGg44Q.80.00066
ORF1ab/nsp15A1-B12K12TaAgaCg44R.10.00036
ORF1ab/nsp15A1-B12K12RaAgaGg33A.2.50.001497
ORF1ab/nsp15A1-B12K12NaaGaaT33AY.1160.00086
ORF1ab/nsp15A1-B12K12KaaGaaA33AY.120.000948
ORF1ab/nsp15A1-B12K12KaaGaaA33AY.250.000018
ORF1ab/nsp15A1-B12K12NaaGaaT33AY.300.001187
ORF1ab/nsp15A1-B12K12KaaGaaA33AY.350.000699
ORF1ab/nsp15A1-B12K12TaAgaCg33AY.390.000074
ORF1ab/nsp15A1-B12K12KaaGaaA33AY.420.000121
ORF1ab/nsp15A1-B12K12EAagGag33AY.430.000013
ORF1ab/nsp15A1-B12K12KaaGaaA33AY.46.60.000217
ORF1ab/nsp15A1-B12K12NaaGaaT33AY.700.000626
ORF1ab/nsp15A1-B12K12TaAgaCg33AY.9.20.00011
ORF1ab/nsp15A1-B12K12NaaGaaT33B0.000383
ORF1ab/nsp15A1-B12K12NaaGaaT33B.1.1.1980.004405
ORF1ab/nsp15A1-B12K12NaaGaaT33B.1.1.2840.000322
ORF1ab/nsp15A1-B12K12NaaGaaT33B.1.1.330.001263
ORF1ab/nsp15A1-B12K12NaaGaaT33B.1.1.830.00813
ORF1ab/nsp15A1-B12K12NaaGaaT33B.1.177.560.002003
ORF1ab/nsp15A1-B12K12NaaGaaT33B.1.2180.015464
ORF1ab/nsp15A1-B12K12NaaGaaT33B.1.2350.007557
ORF1ab/nsp15A1-B12K12NaaGaaT33B.1.2430.000209
ORF1ab/nsp15A1-B12K12NaaGaaT33B.1.243.20.043478
ORF1ab/nsp15A1-B12K12NaaGaaC23B.1.3110.000549
ORF1ab/nsp15A1-B12K12NaaGaaT13B.1.3110.000275
ORF1ab/nsp15A1-B12K12NaaGaaT33B.1.390.011719
ORF1ab/nsp15A1-B12K12QAagCag33B.1.5260.000071
ORF1ab/nsp15A1-B12K12EAagGag33B.1.617.20.000011
ORF1ab/nsp15A1-B12K12NaaGaaT33B.1.6210.000266
ORF1ab/nsp15A1-B12K12NaaGaaT33C.370.000348
ORF1ab/nsp15A1-B12K12KaaGaaA33P.10.000047
ORF1ab/nsp15A1-B12K12delAAG---33P.1.150.000697
ORF1ab/nsp15A1-B12K12NaaGaaT33R.10.00027
ORF1ab/nsp15A1-B12K12delAAG---220.111111
ORF1ab/nsp15A1-B12K12XAagTag120.055556
ORF1ab/nsp15A1-B12K12XAaGTaA120.055556
ORF1ab/nsp15A1-B12K12NaaGaaT22A.10.000564
ORF1ab/nsp15A1-B12K12NaaGaaT22A.23.10.001408
ORF1ab/nsp15A1-B12K12NaaGaaT22AY.1070.000932
ORF1ab/nsp15A1-B12K12NaaGaaT22AY.1090.001479
ORF1ab/nsp15A1-B12K12RaAgaGg22AY.1130.000285
ORF1ab/nsp15A1-B12K12NaaGaaT22AY.1210.000271
ORF1ab/nsp15A1-B12K12NaaGaaT22AY.190.002281
ORF1ab/nsp15A1-B12K12RaAgaGg22AY.230.000139
ORF1ab/nsp15A1-B12K12NaaGaaT22AY.340.000194
ORF1ab/nsp15A1-B12K12EAagGag22AY.4.2.10.000298
ORF1ab/nsp15A1-B12K12RaAgaGg22AY.4.50.000215
ORF1ab/nsp15A1-B12K12TaAgaCg22AY.440.000012
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ORF1ab/nsp15A1-B12K12WAAgTGg11All0
ORF1ab/nsp15A1-B12K12NaaGaaT11AT.10.005128
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ORF1ab/nsp15A1-B12K12TaAgaCg11AY.670.000464
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ORF1ab/nsp15A1-B12K12delAAG---11B.1.1.3010.001179
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ORF1ab/nsp15A1-B12K12NaaGaaT11B.1.1.3180.000302
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ORF1ab/nsp15A1-B12K12delAAG---11P.10.000016
ORF1ab/nsp15A1-B12K12NaaGaaT11P.1.100.000269
ORF1ab/nsp15A1-B12K12NaaGaaT11P.1.120.000484
ORF1ab/nsp15A1-B12K12NaaGaaT11P.1.150.000232
ORF1ab/nsp15A1-B12K12NaaGaaT11P.1.160.000374
ORF1ab/nsp15A1-B12K12NaaGaaT11P.60.003145
ORF1ab/nsp15A1-B12K12delAAG---11Q.10.000126
ORF1ab/nsp15A1-B12K12RaAgaGg11Q.30.000145
ORF1ab/nsp15A1-B12K12QAagCag11R.10.00009