CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 12

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp15A1-B	12	K12N	K6464N	nonsyn	aaG	aaT	5194	5165	0.994417	19654-19656
ORF1ab/nsp15A1-B	12	K12N	K6464N	nonsyn	aaG	aaC	5194	29	0.00558337	19654-19656
ORF1ab/nsp15A1-B	12	K12R	K6464R	nonsyn	aAg	aGg	2110	2109	0.999526	19654-19656
ORF1ab/nsp15A1-B	12	K12R	K6464R	nonsyn	AAg	CGg	2110	1	0.000473934	19654-19656
ORF1ab/nsp15A1-B	12	K12K	K6464K	syn	aaG	aaA	801	801	1	19654-19656
ORF1ab/nsp15A1-B	12	K12E	K6464E	nonsyn	Aag	Gag	128	128	1	19654-19656
ORF1ab/nsp15A1-B	12	K12T	K6464T	nonsyn	aAg	aCg	67	67	1	19654-19656
ORF1ab/nsp15A1-B	12	K12M	K6464M	nonsyn	aAg	aTg	50	50	1	19654-19656
ORF1ab/nsp15A1-B	12	K12del	K6464del	del	AAG	---	22	22	1	19654-19656
ORF1ab/nsp15A1-B	12	K12Q	K6464Q	nonsyn	Aag	Cag	17	17	1	19654-19656
ORF1ab/nsp15A1-B	12	K12del1	K6464del1	del	aaG	aa-	7	4	0.571429	19654-19656
ORF1ab/nsp15A1-B	12	K12del1	K6464del1	del	Aag	-ag	7	3	0.428571	19654-19656
ORF1ab/nsp15A1-B	12	K12X	K6464X	nonsyn	Aag	Tag	5	3	0.6	19654-19656
ORF1ab/nsp15A1-B	12	K12X	K6464X	nonsyn	AaG	TaA	5	2	0.4	19654-19656
ORF1ab/nsp15A1-B	12	K12del2	K6464del2	del	aAG	a--	1	1	1	19654-19656
ORF1ab/nsp15A1-B	12	K12W	K6464W	nonsyn	AAg	TGg	1	1	1	19654-19656

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	5165	5194	All	0.000988
ORF1ab/nsp15A1-B	12	K12N	aaG	aaC	29	5194	All	0.000006
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	2109	2110	All	0.000403
ORF1ab/nsp15A1-B	12	K12R	AAg	CGg	1	2110	All	0
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1606	1606	B.1.177	0.021147
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1043	1049	AY.4	0.001623
ORF1ab/nsp15A1-B	12	K12N	aaG	aaC	6	1049	AY.4	0.000009
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	801	801	All	0.000153
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	414	414	AY.3	0.004118
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	390	395	B.1.1.7	0.000349
ORF1ab/nsp15A1-B	12	K12N	aaG	aaC	5	395	B.1.1.7	0.000004
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	273	273	B.1.617.2	0.001028
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	269	271	AY.43	0.001192
ORF1ab/nsp15A1-B	12	K12N	aaG	aaC	2	271	AY.43	0.000009
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	266	266	B.1.1.7	0.000238
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	241	241	AY.25	0.00145
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	207	207	B.1.2	0.001823
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	128	128	All	0.000024
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	124	124	B.1.1.7	0.000111
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	114	114	AY.44	0.000694
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	107	108	B.1.427	0.005403
ORF1ab/nsp15A1-B	12	K12N	aaG	aaC	1	108	B.1.427	0.00005
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	100	100	AY.5	0.002065
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	93	93	B.1.1.214	0.005157
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	84	84	AY.46.5	0.016667
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	84	84	B.1.637	0.006138
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	83	83	AY.103	0.000515
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	78	78	B.1.1	0.001415
ORF1ab/nsp15A1-B	12	K12T	aAg	aCg	67	67	All	0.000013
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	65	65	B.1.516	0.127202
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	62	62	B.1.258	0.004126
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	59	59	AY.59	0.03125
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	59	59	AY.7.1	0.006649
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	56	59	B.1.526	0.001316
ORF1ab/nsp15A1-B	12	K12N	aaG	aaC	3	59	B.1.526	0.000071
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	58	58	B.1.526	0.001363
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	53	55	P.1	0.000835
ORF1ab/nsp15A1-B	12	K12N	aaG	aaC	2	55	P.1	0.000032
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	52	53	B.1	0.000476
ORF1ab/nsp15A1-B	12	K12N	aaG	aaC	1	53	B.1	0.000009
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	52	52	AY.3.1	0.004433
ORF1ab/nsp15A1-B	12	K12M	aAg	aTg	50	50	All	0.00001
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	48	48	B.1.429	0.001129
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	45	45	B.1.1.229	0.258621
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	41	41	N.9	0.244048
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	38	38	B.1.351	0.00113
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	36	36	AY.102	0.000955
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	36	36	B.1.1.347	0.654545
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	35	35	B.1.1.507	0.304348
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	34	34	AY.20	0.001321
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	34	34	B.1.177	0.000448
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	34	34	P.1.17	0.0055
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	33	33	B.1.177	0.000435
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	32	32	B.1.126	0.040816
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	31	31	C.36.3	0.017584
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	30	30	AY.13	0.004829
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	30	30	AY.47	0.000933
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	30	30	B.1.36	0.004377
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	29	29	AY.4	0.000045
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	29	29	B.1.2	0.000255
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	28	28	AY.52	0.022801
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	25	25	B.1.637	0.001827
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	24	24	AY.39	0.000593
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	23	23	AY.14	0.002024
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	23	23	AY.39	0.000568
ORF1ab/nsp15A1-B	12	K12del	AAG	---	22	22	All	0.000004
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	22	22	B.1	0.000202
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	22	22	B.1.1.28	0.006847
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	22	22	B.1.177.81	0.004165
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	22	22	B.1.596.1	0.205607
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	21	21	B.1.1.422	0.954545
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	20	20	AY.39.1	0.000792
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	20	20	B.1.617.2	0.000075
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	20	20	C.37	0.002321
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	19	19	AY.23	0.001325
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	19	19	AY.61	0.001991
ORF1ab/nsp15A1-B	12	K12T	aAg	aCg	19	19	B.1.617.2	0.000072
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	19	19	Q.3	0.002756
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	18	18	AY.46.5	0.003571
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	18	18	B.1.160	0.000561
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	18	18	B.1.221	0.001279
ORF1ab/nsp15A1-B	12	K12Q	Aag	Cag	17	17	All	0.000003
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	17	17	B.1.177.86	0.003119
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	17	17	B.1.36.36	0.010235
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	16	16	AY.33	0.001068
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	16	16	B.1.617.1	0.002063
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	16	16	B.1.617.2	0.00006
ORF1ab/nsp15A1-B	12	K12M	aAg	aTg	16	16	B.1.617.2	0.00006
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	14	15	AY.26	0.000396
ORF1ab/nsp15A1-B	12	K12N	aaG	aaC	1	15	AY.26	0.000028
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	15	15	AY.5	0.00031
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	15	15	B.1	0.000137
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	15	15	B.1.206	0.012235
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	15	15	P.2	0.0028
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	14	14	AY.29	0.000221
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	14	14	B.1.422	0.011373
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	13	13	AY.100	0.000598
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	13	13	AY.4	0.00002
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	13	13	AY.90	0.008898
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	13	13	B.1.1.225	0.093525
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	12	13	B.1.1.519	0.000477
ORF1ab/nsp15A1-B	12	K12N	aaG	aaC	1	13	B.1.1.519	0.00004
ORF1ab/nsp15A1-B	12	K12T	aAg	aCg	13	13	B.1.1.7	0.000012
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	12	12	AY.3.1	0.001023
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	12	12	AY.42	0.000483
ORF1ab/nsp15A1-B	12	K12M	aAg	aTg	12	12	B.1.1.222	0.002448
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	12	12	B.1.2	0.000106
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	11	11	B.1.1.10	0.012263
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	11	11	B.1.429	0.000259
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	11	11	B.1.637	0.000804
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	10	10	AY.119	0.000353
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	10	10	AY.3	0.000099
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	10	10	AY.4.2	0.000217
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	10	10	B.1.177.87	0.007278
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	9	9	AY.118	0.000564
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	9	9	AY.29	0.000142
ORF1ab/nsp15A1-B	12	K12T	aAg	aCg	9	9	AY.43	0.00004
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	9	9	AY.44	0.000055
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	9	9	AY.53	0.002588
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	9	9	B.1.1.519	0.000357
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	9	9	B.1.1.70	0.00307
ORF1ab/nsp15A1-B	12	K12T	aAg	aCg	9	9	B.1.525	0.001018
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	8	8	AY.46.3	0.00747
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	8	8	AY.54	0.000763
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	8	8	AY.75	0.000448
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	8	8	AY.93	0.002185
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	8	8	B.1.1.244	0.123077
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	8	8	B.1.177.50	0.037559
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	7	8	P.1	0.00011
ORF1ab/nsp15A1-B	12	K12R	AAg	CGg	1	8	P.1	0.000016
ORF1ab/nsp15A1-B	12	K12del1	aaG	aa-	4	7	All	0.000001
ORF1ab/nsp15A1-B	12	K12del1	Aag	-ag	3	7	All	0.000001
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	7	7	AY.16	0.002658
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	6	7	AY.39.1	0.000238
ORF1ab/nsp15A1-B	12	K12N	aaG	aaC	1	7	AY.39.1	0.00004
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	7	7	B.1.1.393	0.777778
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	7	7	B.1.466.2	0.002739
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	7	7	B.1.617.1	0.000903
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	6	6	AY.120	0.000223
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	6	6	AY.25	0.000036
ORF1ab/nsp15A1-B	12	K12M	aAg	aTg	6	6	AY.43	0.000027
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	6	6	AY.44	0.000037
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	6	6	AY.6	0.000247
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	6	6	AY.75.1	0.001082
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	6	6	AY.98.1	0.000291
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	6	6	B.1.1.311	0.002149
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	6	6	B.1.1.37	0.001157
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	6	6	B.1.1.406	0.038961
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	6	6	B.1.1.434	0.002091
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	6	6	B.1.628	0.002114
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	6	6	P.1.7	0.001916
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	5	5	AD.2	0.001095
ORF1ab/nsp15A1-B	12	K12X	Aag	Tag	3	5	All	0.000001
ORF1ab/nsp15A1-B	12	K12X	AaG	TaA	2	5	All	0
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	5	5	AY.100	0.00023
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	5	5	AY.106	0.001674
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	5	5	AY.46	0.00052
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	5	5	AY.78	0.007704
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	5	5	B.1.1.239	0.16129
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	5	5	B.1.1.306	0.002192
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	5	5	B.1.369	0.001426
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	5	5	B.1.429	0.000118
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	5	5	B.1.596	0.000436
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	5	5	P.1.14	0.000239
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	4	4	AY.110	0.000451
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	4	4	AY.116.1	0.001246
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	4	4	AY.117	0.000338
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	4	4	AY.22	0.008368
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	4	4	AY.36	0.000593
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	4	4	AY.43	0.000018
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	4	4	AY.43	0.000018
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	4	4	AY.46.6	0.000289
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	4	4	AY.57	0.002625
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	4	4	AY.7.2	0.002237
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	4	4	AY.98	0.000316
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	4	4	B.1.1	0.000073
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	4	4	B.1.1.214	0.000222
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	4	4	B.1.1.318	0.001207
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	4	4	B.1.1.354	0.017544
ORF1ab/nsp15A1-B	12	K12del	AAG	---	4	4	B.1.1.7	0.000004
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	4	4	B.1.1.7	0.000004
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	4	4	B.1.2	0.000035
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	4	4	B.1.221	0.000284
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	4	4	B.1.234	0.000528
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	4	4	B.1.258.17	0.000416
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	4	4	B.1.265	0.005083
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	4	4	B.1.36.31	0.007005
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	4	4	B.1.526	0.000094
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	4	4	B.1.628	0.001409
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	4	4	C.37	0.000464
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	4	4	Q.8	0.00066
ORF1ab/nsp15A1-B	12	K12T	aAg	aCg	4	4	R.1	0.00036
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	3	3	A.2.5	0.001497
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	3	3	AY.116	0.00086
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	3	3	AY.12	0.000948
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	3	3	AY.25	0.000018
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	3	3	AY.30	0.001187
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	3	3	AY.35	0.000699
ORF1ab/nsp15A1-B	12	K12T	aAg	aCg	3	3	AY.39	0.000074
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	3	3	AY.42	0.000121
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	3	3	AY.43	0.000013
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	3	3	AY.46.6	0.000217
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	3	3	AY.70	0.000626
ORF1ab/nsp15A1-B	12	K12T	aAg	aCg	3	3	AY.9.2	0.00011
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	3	3	B	0.000383
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	3	3	B.1.1.198	0.004405
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	3	3	B.1.1.284	0.000322
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	3	3	B.1.1.33	0.001263
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	3	3	B.1.1.83	0.00813
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	3	3	B.1.177.56	0.002003
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	3	3	B.1.218	0.015464
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	3	3	B.1.235	0.007557
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	3	3	B.1.243	0.000209
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	3	3	B.1.243.2	0.043478
ORF1ab/nsp15A1-B	12	K12N	aaG	aaC	2	3	B.1.311	0.000549
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	3	B.1.311	0.000275
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	3	3	B.1.39	0.011719
ORF1ab/nsp15A1-B	12	K12Q	Aag	Cag	3	3	B.1.526	0.000071
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	3	3	B.1.617.2	0.000011
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	3	3	B.1.621	0.000266
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	3	3	C.37	0.000348
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	3	3	P.1	0.000047
ORF1ab/nsp15A1-B	12	K12del	AAG	---	3	3	P.1.15	0.000697
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	3	3	R.1	0.00027
ORF1ab/nsp15A1-B	12	K12del	AAG	---	2	2		0.111111
ORF1ab/nsp15A1-B	12	K12X	Aag	Tag	1	2		0.055556
ORF1ab/nsp15A1-B	12	K12X	AaG	TaA	1	2		0.055556
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	A.1	0.000564
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	A.23.1	0.001408
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	AY.107	0.000932
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	AY.109	0.001479
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	2	2	AY.113	0.000285
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	AY.121	0.000271
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	AY.19	0.002281
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	2	2	AY.23	0.000139
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	AY.34	0.000194
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	2	2	AY.4.2.1	0.000298
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	2	2	AY.4.5	0.000215
ORF1ab/nsp15A1-B	12	K12T	aAg	aCg	2	2	AY.44	0.000012
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	2	2	AY.46.6	0.000144
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	AY.51	0.001818
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	AY.7	0.000392
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	AY.72	0.002721
ORF1ab/nsp15A1-B	12	K12Q	Aag	Cag	2	2	AY.75	0.000112
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	AY.77	0.002255
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	AY.79	0.002421
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	AY.9.2	0.000073
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	2	2	AY.9.2	0.000073
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	AY.92	0.000575
ORF1ab/nsp15A1-B	12	K12M	aAg	aTg	2	2	AY.99	0.002099
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	AY.99.2	0.000184
ORF1ab/nsp15A1-B	12	K12Q	Aag	Cag	2	2	B	0.000256
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	2	2	B.1	0.000018
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	B.1.1.216	0.001781
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	2	2	B.1.1.291	0.001485
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	2	2	B.1.1.306	0.000877
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	B.1.1.316	0.00185
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	B.1.1.317	0.000823
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	2	2	B.1.1.326	0.003521
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	B.1.1.333	0.002153
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	2	2	B.1.1.519	0.000079
ORF1ab/nsp15A1-B	12	K12Q	Aag	Cag	2	2	B.1.1.7	0.000002
ORF1ab/nsp15A1-B	12	K12M	aAg	aTg	2	2	B.1.1.7	0.000002
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	2	2	B.1.1.71	0.012121
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	2	2	B.1.160	0.000062
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	2	2	B.1.177.50	0.00939
ORF1ab/nsp15A1-B	12	K12N	aaG	aaC	2	2	B.1.177.65	0.001331
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	2	2	B.1.177.82	0.000955
ORF1ab/nsp15A1-B	12	K12M	aAg	aTg	2	2	B.1.2	0.000018
ORF1ab/nsp15A1-B	12	K12Q	Aag	Cag	2	2	B.1.2	0.000018
ORF1ab/nsp15A1-B	12	K12del	AAG	---	2	2	B.1.2	0.000018
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	B.1.214.2	0.001199
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	B.1.240	0.000431
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	B.1.298	0.004228
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	B.1.336	0.004878
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	2	2	B.1.351	0.000059
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	2	2	B.1.36	0.000292
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	B.1.36.29	0.001035
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	B.1.400	0.000858
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	B.1.517	0.000854
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	2	2	B.1.621	0.000177
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	2	2	B.1.621.1	0.001012
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	2	2	B.1.623	0.001073
ORF1ab/nsp15A1-B	12	K12del1	Aag	-ag	2	2	B.1.627	0.00404
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	C.2	0.032258
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	P.1.14	0.000096
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	2	2	Q.8	0.00033
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	2	2	W.4	0.002703
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1		0.055556
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	A	0.000387
ORF1ab/nsp15A1-B	12	K12del	AAG	---	1	1	A	0.000387
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	A.18	0.05
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	A.2.4	0.003367
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	A.2.5	0.000499
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	A.2.5.1	0.004808
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	A.28	0.002646
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	A.29	0.005319
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	AD.2	0.000219
ORF1ab/nsp15A1-B	12	K12del2	aAG	a--	1	1	All	0
ORF1ab/nsp15A1-B	12	K12W	AAg	TGg	1	1	All	0
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	AT.1	0.005128
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	1	1	AY.102	0.000027
ORF1ab/nsp15A1-B	12	K12M	aAg	aTg	1	1	AY.102	0.000027
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	AY.103	0.000006
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	1	1	AY.113	0.000142
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	AY.113	0.000142
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	AY.114	0.000231
ORF1ab/nsp15A1-B	12	K12del	AAG	---	1	1	AY.116	0.000287
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	AY.117	0.000085
ORF1ab/nsp15A1-B	12	K12del	AAG	---	1	1	AY.118	0.000063
ORF1ab/nsp15A1-B	12	K12Q	Aag	Cag	1	1	AY.119	0.000035
ORF1ab/nsp15A1-B	12	K12del	AAG	---	1	1	AY.120	0.000037
ORF1ab/nsp15A1-B	12	K12del1	aaG	aa-	1	1	AY.16	0.00038
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	AY.16.1	0.00047
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	AY.2	0.000356
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	AY.20	0.000039
ORF1ab/nsp15A1-B	12	K12M	aAg	aTg	1	1	AY.23	0.00007
ORF1ab/nsp15A1-B	12	K12Q	Aag	Cag	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	AY.26	0.000028
ORF1ab/nsp15A1-B	12	K12del1	aaG	aa-	1	1	AY.26	0.000028
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	AY.26	0.000028
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	1	1	AY.29	0.000016
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	AY.3	0.00001
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	AY.32	0.000532
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	AY.34.1	0.00051
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	AY.34.1	0.00051
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	AY.35	0.000233
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	1	1	AY.36	0.000148
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	AY.36	0.000148
ORF1ab/nsp15A1-B	12	K12N	aaG	aaC	1	1	AY.38	0.000499
ORF1ab/nsp15A1-B	12	K12M	aAg	aTg	1	1	AY.39.1	0.00004
ORF1ab/nsp15A1-B	12	K12del1	aaG	aa-	1	1	AY.4	0.000002
ORF1ab/nsp15A1-B	12	K12M	aAg	aTg	1	1	AY.4.2	0.000022
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	AY.4.2	0.000022
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	1	1	AY.4.2	0.000022
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	AY.4.2.1	0.000149
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	AY.4.3	0.000842
ORF1ab/nsp15A1-B	12	K12del	AAG	---	1	1	AY.4.5	0.000107
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	AY.42	0.00004
ORF1ab/nsp15A1-B	12	K12X	Aag	Tag	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	12	K12X	AaG	TaA	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	12	K12del	AAG	---	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	12	K12del2	aAG	a--	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	AY.45	0.000122
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	1	1	AY.45	0.000122
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	12	K12M	aAg	aTg	1	1	AY.5	0.000021
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	AY.5.3	0.000337
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	AY.55	0.000917
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	AY.56	0.001605
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	AY.6	0.000041
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	AY.60	0.000938
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	AY.61	0.000105
ORF1ab/nsp15A1-B	12	K12del	AAG	---	1	1	AY.62	0.000436
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	AY.65	0.000533
ORF1ab/nsp15A1-B	12	K12T	aAg	aCg	1	1	AY.67	0.000464
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	AY.68	0.000274
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	AY.68	0.000274
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	AY.71	0.000475
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	AY.74	0.000116
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	AY.79	0.001211
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	AY.84	0.000437
ORF1ab/nsp15A1-B	12	K12M	aAg	aTg	1	1	AY.86	0.00083
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	AY.88	0.000884
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	AY.9	0.000068
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	AY.9.1	0.000084
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	AY.93	0.000273
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	1	1	AY.98	0.000079
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	AY.99.1	0.001553
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	1	1	AY.99.2	0.000092
ORF1ab/nsp15A1-B	12	K12Q	Aag	Cag	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	12	K12T	aAg	aCg	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	12	K12del1	Aag	-ag	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	12	K12del	AAG	---	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.1.138	0.006061
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.1.171	0.003676
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.1.220	0.001859
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	B.1.1.222	0.000204
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.1.222	0.000204
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	1	1	B.1.1.232	0.001815
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.1.25	0.000569
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.1.265	0.003155
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	1	1	B.1.1.28	0.000311
ORF1ab/nsp15A1-B	12	K12del	AAG	---	1	1	B.1.1.301	0.001179
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.1.312	0.001912
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.1.318	0.000302
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.1.337	0.003597
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.1.348	0.000796
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.1.372	0.000689
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	B.1.1.372	0.000689
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.1.388	0.045455
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.1.39	0.00051
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.1.398	0.003226
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.1.413	0.006897
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.1.416	0.000905
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.1.434	0.000349
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.1.448	0.002033
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.1.48	0.002874
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.1.487	0.005587
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.1.50	0.000679
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	B.1.1.50	0.000679
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.1.513	0.012346
ORF1ab/nsp15A1-B	12	K12X	Aag	Tag	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.1.8	0.003584
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.149	0.003425
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	B.1.160	0.000031
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.160.14	0.002119
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.160.16	0.000929
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.170	0.00431
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	B.1.177.10	0.000878
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	B.1.177.21	0.000076
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	B.1.177.4	0.000211
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	B.1.177.50	0.004695
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.177.53	0.002392
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.177.6	0.000977
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.177.65	0.000665
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.177.7	0.000165
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.177.7	0.000165
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.177.81	0.000189
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.177.81	0.000189
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	1	1	B.1.177.82	0.000477
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.177.82	0.000477
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.189	0.004292
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.221.3	0.000833
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	1	1	B.1.234	0.000132
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.235	0.002519
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	B.1.243	0.00007
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	1	1	B.1.252	0.006623
ORF1ab/nsp15A1-B	12	K12M	aAg	aTg	1	1	B.1.258.17	0.000104
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.268	0.010417
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	1	1	B.1.305	0.002151
ORF1ab/nsp15A1-B	12	K12T	aAg	aCg	1	1	B.1.311	0.000275
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.320	0.001245
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.343	0.020833
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.349	0.000715
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.351.3	0.000876
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.351.5	0.0006
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	B.1.36	0.000146
ORF1ab/nsp15A1-B	12	K12M	aAg	aTg	1	1	B.1.36.1	0.00114
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	1	1	B.1.36.18	0.00042
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.36.19	0.009259
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	B.1.36.29	0.000517
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.36.8	0.001
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	B.1.36.9	0.003215
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.366	0.004878
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.371	0.001122
ORF1ab/nsp15A1-B	12	K12M	aAg	aTg	1	1	B.1.371	0.001122
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.389	0.001002
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.391	0.001127
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.391	0.001127
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.396	0.000706
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.397	0.004854
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	B.1.416.1	0.001563
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.427	0.00005
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.428	0.00102
ORF1ab/nsp15A1-B	12	K12M	aAg	aTg	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.453	0.003236
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.466.1	0.007194
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.468	0.005714
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.495	0.009091
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	B.1.517	0.000427
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.525	0.000113
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.525	0.000113
ORF1ab/nsp15A1-B	12	K12Q	Aag	Cag	1	1	B.1.525	0.000113
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.528	0.047619
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.538	0.008065
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.540	0.009709
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.552	0.015152
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.561	0.000397
ORF1ab/nsp15A1-B	12	K12Q	Aag	Cag	1	1	B.1.567	0.003333
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.575.1	0.002439
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.576	0.000907
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.577	0.000687
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	B.1.580	0.004065
ORF1ab/nsp15A1-B	12	K12del1	aaG	aa-	1	1	B.1.582	0.000491
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.595	0.000261
ORF1ab/nsp15A1-B	12	K12T	aAg	aCg	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	12	K12W	AAg	TGg	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.619	0.000871
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	B.1.621	0.000089
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.622	0.012987
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	B.1.623	0.000536
ORF1ab/nsp15A1-B	12	K12N	aaG	aaC	1	1	B.1.623	0.000536
ORF1ab/nsp15A1-B	12	K12T	aAg	aCg	1	1	B.1.636	0.006711
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.1.78	0.008547
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	B.12	0.00641
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	B.6.6	0.000889
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	C.36.3	0.000567
ORF1ab/nsp15A1-B	12	K12K	aaG	aaA	1	1	C.37.1	0.002618
ORF1ab/nsp15A1-B	12	K12E	Aag	Gag	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	D.5	0.004975
ORF1ab/nsp15A1-B	12	K12del	AAG	---	1	1	P.1	0.000016
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	P.1.10	0.000269
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	P.1.12	0.000484
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	P.1.15	0.000232
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	P.1.16	0.000374
ORF1ab/nsp15A1-B	12	K12N	aaG	aaT	1	1	P.6	0.003145
ORF1ab/nsp15A1-B	12	K12del	AAG	---	1	1	Q.1	0.000126
ORF1ab/nsp15A1-B	12	K12R	aAg	aGg	1	1	Q.3	0.000145
ORF1ab/nsp15A1-B	12	K12Q	Aag	Cag	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.