CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp15A1-B | 119 | L119L | L6571L | syn | ctC | ctA | 810 | 473 | 0.583951 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119L | L6571L | syn | ctC | ctT | 810 | 334 | 0.412346 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119L | L6571L | syn | ctC | ctG | 810 | 3 | 0.0037037 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119I | L6571I | nonsyn | Ctc | Atc | 800 | 797 | 0.99625 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119I | L6571I | nonsyn | CtC | AtT | 800 | 3 | 0.00375 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119del | L6571del | del | CTC | --- | 186 | 186 | 1 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119F | L6571F | nonsyn | Ctc | Ttc | 105 | 102 | 0.971429 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119F | L6571F | nonsyn | CtC | TtT | 105 | 3 | 0.0285714 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119P | L6571P | nonsyn | cTc | cCc | 21 | 16 | 0.761905 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119P | L6571P | nonsyn | cTC | cCT | 21 | 2 | 0.0952381 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119P | L6571P | nonsyn | cTC | cCA | 21 | 2 | 0.0952381 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119P | L6571P | nonsyn | cTC | cCG | 21 | 1 | 0.047619 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119del1 | L6571del1 | del | cTc | c-c | 6 | 4 | 0.666667 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119del1 | L6571del1 | del | CTC | -NN | 6 | 1 | 0.166667 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119del1 | L6571del1 | del | ctC | ct- | 6 | 1 | 0.166667 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119H | L6571H | nonsyn | cTc | cAc | 4 | 4 | 1 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119T | L6571T | nonsyn | CTc | ACc | 4 | 3 | 0.75 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119del2 | L6571del2 | del | CTc | --c | 4 | 3 | 0.75 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119del2 | L6571del2 | del | cTC | c-- | 4 | 1 | 0.25 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119T | L6571T | nonsyn | CTC | ACT | 4 | 1 | 0.25 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119S | L6571S | nonsyn | CTc | TCc | 3 | 2 | 0.666667 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119S | L6571S | nonsyn | CTC | TCA | 3 | 1 | 0.333333 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119Y | L6571Y | nonsyn | CTc | TAc | 1 | 1 | 1 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119C | L6571C | nonsyn | CTc | TGc | 1 | 1 | 1 | 19975-19977 |
ORF1ab/nsp15A1-B | 119 | L119R | L6571R | nonsyn | cTc | cGc | 1 | 1 | 1 | 19975-19977 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 473 | 810 | All | 0.00009 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 334 | 810 | All | 0.000064 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctG | 3 | 810 | All | 0.000001 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 797 | 800 | All | 0.000152 |
ORF1ab/nsp15A1-B | 119 | L119I | CtC | AtT | 3 | 800 | All | 0.000001 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 653 | 653 | B.1.214.2 | 0.391487 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 186 | 186 | All | 0.000036 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 160 | 170 | AY.4 | 0.000249 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 10 | 170 | AY.4 | 0.000016 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 103 | 122 | B.1.1.7 | 0.000092 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 18 | 122 | B.1.1.7 | 0.000016 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctG | 1 | 122 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 119 | L119F | Ctc | Ttc | 102 | 105 | All | 0.00002 |
ORF1ab/nsp15A1-B | 119 | L119F | CtC | TtT | 3 | 105 | All | 0.000001 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 105 | 105 | AY.34 | 0.010181 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 97 | 97 | B.1.1.138 | 0.587879 |
ORF1ab/nsp15A1-B | 119 | L119F | Ctc | Ttc | 73 | 73 | P.1 | 0.00115 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 41 | 54 | B.1.617.2 | 0.000154 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 13 | 54 | B.1.617.2 | 0.000049 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 48 | 48 | B.1.1.7 | 0.000043 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 41 | 41 | B.1.2 | 0.000361 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 36 | 37 | AY.26 | 0.001019 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 37 | AY.26 | 0.000028 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 19 | 28 | AY.3 | 0.000189 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 9 | 28 | AY.3 | 0.00009 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 13 | 22 | AY.44 | 0.000079 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 9 | 22 | AY.44 | 0.000055 |
ORF1ab/nsp15A1-B | 119 | L119P | cTc | cCc | 16 | 21 | All | 0.000003 |
ORF1ab/nsp15A1-B | 119 | L119P | cTC | cCA | 2 | 21 | All | 0 |
ORF1ab/nsp15A1-B | 119 | L119P | cTC | cCT | 2 | 21 | All | 0 |
ORF1ab/nsp15A1-B | 119 | L119P | cTC | cCG | 1 | 21 | All | 0 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 20 | 20 | AY.4 | 0.000031 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 19 | 20 | B.1 | 0.000174 |
ORF1ab/nsp15A1-B | 119 | L119I | CtC | AtT | 1 | 20 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 8 | 11 | AY.43 | 0.000035 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 3 | 11 | AY.43 | 0.000013 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 6 | 11 | B.1.1 | 0.000109 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 5 | 11 | B.1.1 | 0.000091 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 11 | 11 | B.1.210 | 0.023454 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 6 | 10 | AY.103 | 0.000037 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 4 | 10 | AY.103 | 0.000025 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 5 | 10 | B.1 | 0.000046 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 5 | 10 | B.1 | 0.000046 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 8 | 10 | B.1.1.519 | 0.000318 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 2 | 10 | B.1.1.519 | 0.000079 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 8 | 9 | AY.100 | 0.000368 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 9 | AY.100 | 0.000046 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 9 | 9 | B.1.214 | 0.032967 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 7 | 7 | AY.120 | 0.00026 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 4 | 7 | AY.25 | 0.000024 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 3 | 7 | AY.25 | 0.000018 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 7 | 7 | AY.4.4 | 0.002864 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp15A1-B | 119 | L119del1 | cTc | c-c | 4 | 6 | All | 0.000001 |
ORF1ab/nsp15A1-B | 119 | L119del1 | ctC | ct- | 1 | 6 | All | 0 |
ORF1ab/nsp15A1-B | 119 | L119del1 | CTC | -NN | 1 | 6 | All | 0 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 6 | 6 | AY.98.1 | 0.000291 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp15A1-B | 119 | L119F | Ctc | Ttc | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 4 | 5 | B.1.2 | 0.000035 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 5 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 4 | 4 | A.2.5 | 0.001996 |
ORF1ab/nsp15A1-B | 119 | L119H | cTc | cAc | 4 | 4 | All | 0.000001 |
ORF1ab/nsp15A1-B | 119 | L119del2 | CTc | --c | 3 | 4 | All | 0.000001 |
ORF1ab/nsp15A1-B | 119 | L119T | CTc | ACc | 3 | 4 | All | 0.000001 |
ORF1ab/nsp15A1-B | 119 | L119del2 | cTC | c-- | 1 | 4 | All | 0 |
ORF1ab/nsp15A1-B | 119 | L119T | CTC | ACT | 1 | 4 | All | 0 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 3 | 4 | AY.102 | 0.00008 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 1 | 4 | AY.102 | 0.000027 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp15A1-B | 119 | L119F | Ctc | Ttc | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 2 | 4 | AY.42 | 0.00008 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 2 | 4 | AY.42 | 0.00008 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 2 | 4 | AY.5 | 0.000041 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 2 | 4 | AY.5 | 0.000041 |
ORF1ab/nsp15A1-B | 119 | L119P | cTc | cCc | 3 | 4 | B.1 | 0.000027 |
ORF1ab/nsp15A1-B | 119 | L119P | cTC | cCT | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 4 | 4 | B.1.1.207 | 0.004728 |
ORF1ab/nsp15A1-B | 119 | L119P | cTc | cCc | 3 | 4 | B.1.1.7 | 0.000003 |
ORF1ab/nsp15A1-B | 119 | L119P | cTC | cCT | 1 | 4 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 4 | 4 | B.1.177.77 | 0.002905 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 4 | 4 | B.1.214.1 | 0.08 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 4 | 4 | B.1.438.1 | 0.000429 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp15A1-B | 119 | L119S | CTc | TCc | 2 | 3 | All | 0 |
ORF1ab/nsp15A1-B | 119 | L119S | CTC | TCA | 1 | 3 | All | 0 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 2 | 3 | AY.44 | 0.000012 |
ORF1ab/nsp15A1-B | 119 | L119I | CtC | AtT | 1 | 3 | AY.44 | 0.000006 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 2 | 3 | B.1.177 | 0.000026 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 1 | 3 | B.1.177 | 0.000013 |
ORF1ab/nsp15A1-B | 119 | L119F | CtC | TtT | 2 | 2 | 0.111111 | |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp15A1-B | 119 | L119del2 | CTc | --c | 2 | 2 | 0.111111 | |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 1 | 2 | AY.111 | 0.000183 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 2 | AY.111 | 0.000183 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp15A1-B | 119 | L119del1 | cTc | c-c | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp15A1-B | 119 | L119P | cTc | cCc | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp15A1-B | 119 | L119F | Ctc | Ttc | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 2 | AY.74 | 0.000116 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 1 | 2 | AY.74 | 0.000116 |
ORF1ab/nsp15A1-B | 119 | L119P | cTc | cCc | 2 | 2 | B | 0.000256 |
ORF1ab/nsp15A1-B | 119 | L119T | CTC | ACT | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 119 | L119T | CTc | ACc | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 119 | L119F | CtC | TtT | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 119 | L119F | Ctc | Ttc | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp15A1-B | 119 | L119F | Ctc | Ttc | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp15A1-B | 119 | L119T | CTc | ACc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp15A1-B | 119 | L119del1 | ctC | ct- | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 119 | L119del1 | cTc | c-c | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp15A1-B | 119 | L119F | Ctc | Ttc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp15A1-B | 119 | L119F | Ctc | Ttc | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp15A1-B | 119 | L119P | cTc | cCc | 1 | 1 | AA.2 | 0.007692 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 1 | 1 | AD.1 | 0.004115 |
ORF1ab/nsp15A1-B | 119 | L119Y | CTc | TAc | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 119 | L119C | CTc | TGc | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 119 | L119R | cTc | cGc | 1 | 1 | All | 0 |
ORF1ab/nsp15A1-B | 119 | L119F | Ctc | Ttc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp15A1-B | 119 | L119P | cTc | cCc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp15A1-B | 119 | L119P | cTc | cCc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctG | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp15A1-B | 119 | L119F | Ctc | Ttc | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp15A1-B | 119 | L119F | Ctc | Ttc | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp15A1-B | 119 | L119P | cTC | cCA | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp15A1-B | 119 | L119del2 | cTC | c-- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 119 | L119H | cTc | cAc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp15A1-B | 119 | L119S | CTc | TCc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 119 | L119P | cTC | cCG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp15A1-B | 119 | L119F | Ctc | Ttc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp15A1-B | 119 | L119I | CtC | AtT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp15A1-B | 119 | L119P | cTc | cCc | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp15A1-B | 119 | L119F | Ctc | Ttc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 119 | L119C | CTc | TGc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp15A1-B | 119 | L119F | Ctc | Ttc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 119 | L119Y | CTc | TAc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp15A1-B | 119 | L119F | Ctc | Ttc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp15A1-B | 119 | L119del2 | CTc | --c | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp15A1-B | 119 | L119del1 | CTC | -NN | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 119 | L119H | cTc | cAc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 119 | L119S | CTC | TCA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 119 | L119F | Ctc | Ttc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 1 | B.1.113 | 0.015625 |
ORF1ab/nsp15A1-B | 119 | L119F | Ctc | Ttc | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp15A1-B | 119 | L119P | cTC | cCA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 119 | L119F | Ctc | Ttc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 119 | L119S | CTc | TCc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp15A1-B | 119 | L119H | cTc | cAc | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctG | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp15A1-B | 119 | L119F | Ctc | Ttc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp15A1-B | 119 | L119del1 | cTc | c-c | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp15A1-B | 119 | L119P | cTc | cCc | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp15A1-B | 119 | L119P | cTc | cCc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp15A1-B | 119 | L119I | Ctc | Atc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp15A1-B | 119 | L119H | cTc | cAc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp15A1-B | 119 | L119F | Ctc | Ttc | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp15A1-B | 119 | L119R | cTc | cGc | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp15A1-B | 119 | L119del | CTC | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp15A1-B | 119 | L119L | ctC | ctA | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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