CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 114

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp15A1-B	114	T114T	T6566T	syn	acG	acT	8500	4292	0.504941	19960-19962
ORF1ab/nsp15A1-B	114	T114T	T6566T	syn	acG	acA	8500	3922	0.461412	19960-19962
ORF1ab/nsp15A1-B	114	T114T	T6566T	syn	acG	acC	8500	286	0.0336471	19960-19962
ORF1ab/nsp15A1-B	114	T114A	T6566A	nonsyn	Acg	Gcg	6188	6160	0.995475	19960-19962
ORF1ab/nsp15A1-B	114	T114A	T6566A	nonsyn	AcG	GcA	6188	21	0.00339367	19960-19962
ORF1ab/nsp15A1-B	114	T114A	T6566A	nonsyn	AcG	GcT	6188	7	0.00113122	19960-19962
ORF1ab/nsp15A1-B	114	T114M	T6566M	nonsyn	aCg	aTg	4203	4203	1	19960-19962
ORF1ab/nsp15A1-B	114	T114K	T6566K	nonsyn	aCg	aAg	327	327	1	19960-19962
ORF1ab/nsp15A1-B	114	T114del	T6566del	del	ACG	---	182	182	1	19960-19962
ORF1ab/nsp15A1-B	114	T114P	T6566P	nonsyn	Acg	Ccg	20	19	0.95	19960-19962
ORF1ab/nsp15A1-B	114	T114P	T6566P	nonsyn	AcG	CcA	20	1	0.05	19960-19962
ORF1ab/nsp15A1-B	114	T114V	T6566V	nonsyn	ACg	GTg	9	6	0.666667	19960-19962
ORF1ab/nsp15A1-B	114	T114V	T6566V	nonsyn	ACG	GTA	9	2	0.222222	19960-19962
ORF1ab/nsp15A1-B	114	T114V	T6566V	nonsyn	ACG	GTT	9	1	0.111111	19960-19962
ORF1ab/nsp15A1-B	114	T114S	T6566S	nonsyn	Acg	Tcg	5	5	1	19960-19962
ORF1ab/nsp15A1-B	114	T114I	T6566I	nonsyn	aCG	aTT	5	3	0.6	19960-19962
ORF1ab/nsp15A1-B	114	T114I	T6566I	nonsyn	aCG	aTC	5	1	0.2	19960-19962
ORF1ab/nsp15A1-B	114	T114I	T6566I	nonsyn	aCG	aTA	5	1	0.2	19960-19962
ORF1ab/nsp15A1-B	114	T114R	T6566R	nonsyn	aCg	aGg	4	4	1	19960-19962
ORF1ab/nsp15A1-B	114	T114G	T6566G	nonsyn	ACG	GGA	3	2	0.666667	19960-19962
ORF1ab/nsp15A1-B	114	T114G	T6566G	nonsyn	ACg	GGg	3	1	0.333333	19960-19962
ORF1ab/nsp15A1-B	114	T114L	T6566L	nonsyn	ACg	TTg	2	2	1	19960-19962
ORF1ab/nsp15A1-B	114	T114del1	T6566del1	del	aCg	a-g	2	1	0.5	19960-19962
ORF1ab/nsp15A1-B	114	T114del1	T6566del1	del	acG	ac-	2	1	0.5	19960-19962
ORF1ab/nsp15A1-B	114	T114Q	T6566Q	nonsyn	ACG	CAA	1	1	1	19960-19962
ORF1ab/nsp15A1-B	114	T114E	T6566E	nonsyn	ACg	GAg	1	1	1	19960-19962
ORF1ab/nsp15A1-B	114	T114N	T6566N	nonsyn	aCG	aAC	1	1	1	19960-19962
ORF1ab/nsp15A1-B	114	T114D	T6566D	nonsyn	ACG	GAT	1	1	1	19960-19962

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp15A1-B	114	T114T	acG	acT	4292	8500	All	0.000821
ORF1ab/nsp15A1-B	114	T114T	acG	acA	3922	8500	All	0.00075
ORF1ab/nsp15A1-B	114	T114T	acG	acC	286	8500	All	0.000055
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	6160	6188	All	0.001178
ORF1ab/nsp15A1-B	114	T114A	AcG	GcA	21	6188	All	0.000004
ORF1ab/nsp15A1-B	114	T114A	AcG	GcT	7	6188	All	0.000001
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	4203	4203	All	0.000804
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	3874	3880	AY.4	0.00603
ORF1ab/nsp15A1-B	114	T114A	AcG	GcT	6	3880	AY.4	0.000009
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1592	1593	B.1.1.37	0.30704
ORF1ab/nsp15A1-B	114	T114A	AcG	GcT	1	1593	B.1.1.37	0.000193
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1545	1545	B.1.619.1	0.99102
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1021	1219	B.1.1.7	0.000914
ORF1ab/nsp15A1-B	114	T114T	acG	acA	181	1219	B.1.1.7	0.000162
ORF1ab/nsp15A1-B	114	T114T	acG	acC	17	1219	B.1.1.7	0.000015
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1171	1171	B.1.1.7	0.001048
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1101	1101	B.1.619	0.959059
ORF1ab/nsp15A1-B	114	T114T	acG	acT	431	611	B.1.617.2	0.001623
ORF1ab/nsp15A1-B	114	T114T	acG	acA	175	611	B.1.617.2	0.000659
ORF1ab/nsp15A1-B	114	T114T	acG	acC	5	611	B.1.617.2	0.000019
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	480	480	B.1.617.2	0.001807
ORF1ab/nsp15A1-B	114	T114T	acG	acA	215	342	AY.43	0.000953
ORF1ab/nsp15A1-B	114	T114T	acG	acT	125	342	AY.43	0.000554
ORF1ab/nsp15A1-B	114	T114T	acG	acC	2	342	AY.43	0.000009
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	327	327	All	0.000063
ORF1ab/nsp15A1-B	114	T114T	acG	acT	215	282	B.1	0.001969
ORF1ab/nsp15A1-B	114	T114T	acG	acA	57	282	B.1	0.000522
ORF1ab/nsp15A1-B	114	T114T	acG	acC	10	282	B.1	0.000092
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	276	276	AY.4	0.00043
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	257	257	AY.43	0.001139
ORF1ab/nsp15A1-B	114	T114T	acG	acT	234	251	AY.3	0.002327
ORF1ab/nsp15A1-B	114	T114T	acG	acA	17	251	AY.3	0.000169
ORF1ab/nsp15A1-B	114	T114T	acG	acT	230	249	AY.4	0.000358
ORF1ab/nsp15A1-B	114	T114T	acG	acA	16	249	AY.4	0.000025
ORF1ab/nsp15A1-B	114	T114T	acG	acC	3	249	AY.4	0.000005
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	214	214	AY.46.4	0.035203
ORF1ab/nsp15A1-B	114	T114T	acG	acC	183	183	B.1.480	0.455224
ORF1ab/nsp15A1-B	114	T114del	ACG	---	182	182	All	0.000035
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	166	166	AY.43	0.000735
ORF1ab/nsp15A1-B	114	T114T	acG	acA	110	152	P.1	0.001733
ORF1ab/nsp15A1-B	114	T114T	acG	acT	42	152	P.1	0.000662
ORF1ab/nsp15A1-B	114	T114T	acG	acT	87	146	AY.44	0.00053
ORF1ab/nsp15A1-B	114	T114T	acG	acA	58	146	AY.44	0.000353
ORF1ab/nsp15A1-B	114	T114T	acG	acC	1	146	AY.44	0.000006
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	135	135	B.1.466.1	0.971223
ORF1ab/nsp15A1-B	114	T114T	acG	acT	128	132	B.1.2	0.001127
ORF1ab/nsp15A1-B	114	T114T	acG	acA	2	132	B.1.2	0.000018
ORF1ab/nsp15A1-B	114	T114T	acG	acC	2	132	B.1.2	0.000018
ORF1ab/nsp15A1-B	114	T114T	acG	acT	112	130	AY.103	0.000695
ORF1ab/nsp15A1-B	114	T114T	acG	acA	16	130	AY.103	0.000099
ORF1ab/nsp15A1-B	114	T114T	acG	acC	2	130	AY.103	0.000012
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	125	125	B.1.243	0.008698
ORF1ab/nsp15A1-B	114	T114T	acG	acT	115	121	AY.102	0.003049
ORF1ab/nsp15A1-B	114	T114T	acG	acA	4	121	AY.102	0.000106
ORF1ab/nsp15A1-B	114	T114T	acG	acC	2	121	AY.102	0.000053
ORF1ab/nsp15A1-B	114	T114T	acG	acT	105	115	AY.25	0.000632
ORF1ab/nsp15A1-B	114	T114T	acG	acA	9	115	AY.25	0.000054
ORF1ab/nsp15A1-B	114	T114T	acG	acC	1	115	AY.25	0.000006
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	113	113	AY.9.1	0.009461
ORF1ab/nsp15A1-B	114	T114T	acG	acA	108	109	B.1.221	0.007672
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	109	B.1.221	0.000071
ORF1ab/nsp15A1-B	114	T114T	acG	acT	90	94	AY.33	0.00601
ORF1ab/nsp15A1-B	114	T114T	acG	acC	4	94	AY.33	0.000267
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	88	88	B.1.177.86	0.016144
ORF1ab/nsp15A1-B	114	T114T	acG	acT	81	83	AY.100	0.003727
ORF1ab/nsp15A1-B	114	T114T	acG	acA	2	83	AY.100	0.000092
ORF1ab/nsp15A1-B	114	T114T	acG	acT	80	80	B.1.1.348	0.063694
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	79	79	B.1.617.2	0.000297
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	73	73	AY.44	0.000444
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	67	67	AY.42	0.002695
ORF1ab/nsp15A1-B	114	T114T	acG	acT	67	67	B.1.282	1
ORF1ab/nsp15A1-B	114	T114T	acG	acT	58	66	B.1.177	0.000764
ORF1ab/nsp15A1-B	114	T114T	acG	acA	8	66	B.1.177	0.000105
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	65	65	B.1.561	0.025804
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	64	64	B.1.160	0.001996
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	64	64	B.1.628	0.022551
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	61	61	B.1.2	0.000537
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	59	59	B.1.177	0.000777
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	49	49	AD.2	0.010729
ORF1ab/nsp15A1-B	114	T114del	ACG	---	49	49	B.1.1.7	0.000044
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	47	47	B.1.177	0.000619
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	45	45	AY.103	0.000279
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	45	45	AY.3	0.000448
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	45	45	B.1	0.000412
ORF1ab/nsp15A1-B	114	T114del	ACG	---	45	45	B.1.2	0.000396
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	43	43	AY.33	0.002871
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	41	41	AY.25	0.000247
ORF1ab/nsp15A1-B	114	T114T	acG	acT	40	40	B.1.177.21	0.003059
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	40	40	B.1.429	0.000941
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	40	40	P.2	0.007465
ORF1ab/nsp15A1-B	114	T114T	acG	acT	37	39	B.1.258	0.002462
ORF1ab/nsp15A1-B	114	T114T	acG	acA	2	39	B.1.258	0.000133
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	37	37	AY.20	0.001438
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	37	37	B.1.1.7	0.000033
ORF1ab/nsp15A1-B	114	T114T	acG	acT	24	35	AY.39	0.000593
ORF1ab/nsp15A1-B	114	T114T	acG	acA	10	35	AY.39	0.000247
ORF1ab/nsp15A1-B	114	T114T	acG	acC	1	35	AY.39	0.000025
ORF1ab/nsp15A1-B	114	T114T	acG	acT	35	35	B.1.243.1	0.777778
ORF1ab/nsp15A1-B	114	T114T	acG	acT	33	34	AY.34	0.0032
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	34	AY.34	0.000097
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	34	34	AY.4.2	0.000737
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	34	34	B.1.637	0.002484
ORF1ab/nsp15A1-B	114	T114T	acG	acT	26	32	AY.5	0.000537
ORF1ab/nsp15A1-B	114	T114T	acG	acA	6	32	AY.5	0.000124
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	30	30	B.1.1.372	0.020661
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	30	30	P.1	0.000473
ORF1ab/nsp15A1-B	114	T114T	acG	acT	29	29	AP.1	0.043544
ORF1ab/nsp15A1-B	114	T114T	acG	acT	29	29	B.1.597	0.134259
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	28	28	AY.61	0.002934
ORF1ab/nsp15A1-B	114	T114T	acG	acT	28	28	AY.84	0.012248
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	28	28	B.1.1	0.000508
ORF1ab/nsp15A1-B	114	T114T	acG	acT	27	27	AY.9.2	0.000992
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	27	27	B.1.1.214	0.001497
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	27	27	B.1.36.18	0.011345
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	26	26	AY.119	0.000918
ORF1ab/nsp15A1-B	114	T114T	acG	acA	24	25	B.1.1.50	0.016293
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	25	B.1.1.50	0.000679
ORF1ab/nsp15A1-B	114	T114T	acG	acC	24	25	B.1.621	0.002124
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	25	B.1.621	0.000089
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	24	24	AY.39	0.000593
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	24	24	B.1.1.7	0.000021
ORF1ab/nsp15A1-B	114	T114T	acG	acA	23	24	B.1.565	0.018639
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	24	B.1.565	0.00081
ORF1ab/nsp15A1-B	114	T114T	acG	acT	18	23	B.1.1	0.000327
ORF1ab/nsp15A1-B	114	T114T	acG	acA	3	23	B.1.1	0.000054
ORF1ab/nsp15A1-B	114	T114T	acG	acC	2	23	B.1.1	0.000036
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	22	22	B.1.526	0.000517
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	21	21	AY.29	0.000331
ORF1ab/nsp15A1-B	114	T114T	acG	acT	19	21	AY.29	0.0003
ORF1ab/nsp15A1-B	114	T114T	acG	acA	2	21	AY.29	0.000032
ORF1ab/nsp15A1-B	114	T114T	acG	acT	16	21	AY.61	0.001676
ORF1ab/nsp15A1-B	114	T114T	acG	acA	5	21	AY.61	0.000524
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	21	21	B.1.221	0.001492
ORF1ab/nsp15A1-B	114	T114T	acG	acT	19	21	B.1.429	0.000447
ORF1ab/nsp15A1-B	114	T114T	acG	acA	2	21	B.1.429	0.000047
ORF1ab/nsp15A1-B	114	T114P	Acg	Ccg	19	20	All	0.000004
ORF1ab/nsp15A1-B	114	T114P	AcG	CcA	1	20	All	0
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	20	20	B.1.427	0.00101
ORF1ab/nsp15A1-B	114	T114T	acG	acT	19	19	AY.20	0.000738
ORF1ab/nsp15A1-B	114	T114T	acG	acT	19	19	AY.26	0.000538
ORF1ab/nsp15A1-B	114	T114T	acG	acA	19	19	AY.36	0.002816
ORF1ab/nsp15A1-B	114	T114T	acG	acT	19	19	B.1.1.420	0.019115
ORF1ab/nsp15A1-B	114	T114T	acG	acT	19	19	C.36.3	0.010777
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	18	18	B.1.1.145	0.666667
ORF1ab/nsp15A1-B	114	T114T	acG	acA	12	18	B.1.351	0.000357
ORF1ab/nsp15A1-B	114	T114T	acG	acT	6	18	B.1.351	0.000178
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	17	17	AY.26	0.000481
ORF1ab/nsp15A1-B	114	T114T	acG	acT	17	17	AY.46.6	0.001228
ORF1ab/nsp15A1-B	114	T114A	AcG	GcA	16	17	B.1.2	0.000141
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	17	B.1.2	0.000009
ORF1ab/nsp15A1-B	114	T114T	acG	acT	17	17	Q.3	0.002466
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	16	16	AY.39	0.000395
ORF1ab/nsp15A1-B	114	T114T	acG	acT	11	16	AY.98.1	0.000533
ORF1ab/nsp15A1-B	114	T114T	acG	acA	5	16	AY.98.1	0.000242
ORF1ab/nsp15A1-B	114	T114T	acG	acA	9	16	B.1.526	0.000212
ORF1ab/nsp15A1-B	114	T114T	acG	acT	7	16	B.1.526	0.000165
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	16	16	P.2	0.002986
ORF1ab/nsp15A1-B	114	T114T	acG	acA	8	15	B.1.1.519	0.000318
ORF1ab/nsp15A1-B	114	T114T	acG	acT	7	15	B.1.1.519	0.000278
ORF1ab/nsp15A1-B	114	T114T	acG	acT	15	15	B.1.369	0.004278
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	15	15	B.1.637	0.001096
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	15	15	Q.8	0.002474
ORF1ab/nsp15A1-B	114	T114T	acG	acA	8	14	AY.120	0.000297
ORF1ab/nsp15A1-B	114	T114T	acG	acT	6	14	AY.120	0.000223
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	14	14	B.1.258.14	0.013725
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	14	14	B.1.438.1	0.001502
ORF1ab/nsp15A1-B	114	T114T	acG	acT	8	14	P.1.14	0.000382
ORF1ab/nsp15A1-B	114	T114T	acG	acC	5	14	P.1.14	0.000239
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	14	P.1.14	0.000048
ORF1ab/nsp15A1-B	114	T114T	acG	acT	13	13	A.23.1	0.009155
ORF1ab/nsp15A1-B	114	T114T	acG	acT	13	13	AY.105	0.00836
ORF1ab/nsp15A1-B	114	T114T	acG	acT	13	13	AY.110	0.001465
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	13	13	AY.46	0.001353
ORF1ab/nsp15A1-B	114	T114T	acG	acT	11	13	B.1.160	0.000343
ORF1ab/nsp15A1-B	114	T114T	acG	acA	2	13	B.1.160	0.000062
ORF1ab/nsp15A1-B	114	T114T	acG	acT	13	13	B.1.177.81	0.002461
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	13	13	B.1.258	0.000865
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	13	13	B.1.258	0.000865
ORF1ab/nsp15A1-B	114	T114T	acG	acT	13	13	B.1.36.8	0.013
ORF1ab/nsp15A1-B	114	T114T	acG	acA	13	13	N.5	0.022968
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	13	13	P.1.7	0.004151
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	12	12	AY.118	0.000752
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	12	12	B.1.1.519	0.000477
ORF1ab/nsp15A1-B	114	T114T	acG	acA	12	12	P.1.12	0.005808
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	11	11	AY.102	0.000292
ORF1ab/nsp15A1-B	114	T114T	acG	acA	7	11	AY.121	0.000947
ORF1ab/nsp15A1-B	114	T114T	acG	acT	4	11	AY.121	0.000541
ORF1ab/nsp15A1-B	114	T114T	acG	acT	11	11	AY.4.5	0.001182
ORF1ab/nsp15A1-B	114	T114T	acG	acT	11	11	AY.92	0.00316
ORF1ab/nsp15A1-B	114	T114T	acG	acT	11	11	B.1.617.1	0.001419
ORF1ab/nsp15A1-B	114	T114T	acG	acT	10	10	AY.116	0.002868
ORF1ab/nsp15A1-B	114	T114T	acG	acT	7	10	AY.117	0.000592
ORF1ab/nsp15A1-B	114	T114T	acG	acA	3	10	AY.117	0.000254
ORF1ab/nsp15A1-B	114	T114T	acG	acC	6	10	AY.119	0.000212
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	10	AY.119	0.000071
ORF1ab/nsp15A1-B	114	T114T	acG	acA	2	10	AY.119	0.000071
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	10	10	AY.39.1	0.000396
ORF1ab/nsp15A1-B	114	T114T	acG	acT	9	10	AY.46.4	0.001481
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	10	AY.46.4	0.000165
ORF1ab/nsp15A1-B	114	T114T	acG	acT	10	10	AY.89	0.04902
ORF1ab/nsp15A1-B	114	T114T	acG	acT	10	10	B.1.160.8	0.012887
ORF1ab/nsp15A1-B	114	T114T	acG	acT	8	10	P.2	0.001493
ORF1ab/nsp15A1-B	114	T114T	acG	acA	2	10	P.2	0.000373
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	9	9	A.2.5	0.004491
ORF1ab/nsp15A1-B	114	T114V	ACg	GTg	6	9	All	0.000001
ORF1ab/nsp15A1-B	114	T114V	ACG	GTA	2	9	All	0
ORF1ab/nsp15A1-B	114	T114V	ACG	GTT	1	9	All	0
ORF1ab/nsp15A1-B	114	T114T	acG	acT	6	9	AY.23	0.000418
ORF1ab/nsp15A1-B	114	T114T	acG	acA	3	9	AY.23	0.000209
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	9	9	AY.27	0.000582
ORF1ab/nsp15A1-B	114	T114T	acG	acT	8	9	AY.45	0.000973
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	9	AY.45	0.000122
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	9	9	B.1	0.000082
ORF1ab/nsp15A1-B	114	T114T	acG	acT	8	9	B.1.1.214	0.000444
ORF1ab/nsp15A1-B	114	T114T	acG	acC	1	9	B.1.1.214	0.000055
ORF1ab/nsp15A1-B	114	T114T	acG	acT	7	9	B.1.1.28	0.002179
ORF1ab/nsp15A1-B	114	T114T	acG	acC	2	9	B.1.1.28	0.000622
ORF1ab/nsp15A1-B	114	T114T	acG	acA	9	9	B.1.1.70	0.00307
ORF1ab/nsp15A1-B	114	T114T	acG	acT	7	8	A	0.002709
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	8	A	0.000387
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	8	8	AY.100	0.000368
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	8	8	AY.120	0.000297
ORF1ab/nsp15A1-B	114	T114T	acG	acT	7	8	AY.27	0.000453
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	8	AY.27	0.000065
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	8	8	AY.45	0.000973
ORF1ab/nsp15A1-B	114	T114T	acG	acT	5	8	AY.46	0.00052
ORF1ab/nsp15A1-B	114	T114T	acG	acA	3	8	AY.46	0.000312
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	8	8	AY.46.6	0.000578
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	8	8	AY.70	0.001668
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	8	8	AY.98	0.000632
ORF1ab/nsp15A1-B	114	T114T	acG	acT	8	8	AY.98	0.000632
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	8	8	B.1.1.116	0.5
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	8	8	B.1.1.163	0.061069
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	8	8	B.1.1.284	0.000859
ORF1ab/nsp15A1-B	114	T114T	acG	acA	6	8	B.1.525	0.000679
ORF1ab/nsp15A1-B	114	T114T	acG	acC	1	8	B.1.525	0.000113
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	8	B.1.525	0.000113
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	7	7	AD.1	0.028807
ORF1ab/nsp15A1-B	114	T114T	acG	acT	7	7	AY.47	0.000218
ORF1ab/nsp15A1-B	114	T114T	acG	acT	7	7	AZ.2	0.005747
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	7	7	B.1.396	0.00494
ORF1ab/nsp15A1-B	114	T114del	ACG	---	7	7	B.1.526	0.000165
ORF1ab/nsp15A1-B	114	T114T	acG	acT	5	7	B.1.595	0.001305
ORF1ab/nsp15A1-B	114	T114T	acG	acA	2	7	B.1.595	0.000522
ORF1ab/nsp15A1-B	114	T114T	acG	acT	4	7	B.1.596	0.000349
ORF1ab/nsp15A1-B	114	T114T	acG	acA	3	7	B.1.596	0.000261
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	7	7	C.37	0.000812
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	7	7	Q.3	0.001015
ORF1ab/nsp15A1-B	114	T114T	acG	acT	6	6	AY.120.1	0.001926
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	6	6	AY.23.1	0.002504
ORF1ab/nsp15A1-B	114	T114T	acG	acT	6	6	AY.29.1	0.001323
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	6	6	AY.4	0.000009
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	6	6	AY.4.5	0.000645
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	6	6	AY.42	0.000241
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	6	6	AY.47	0.000187
ORF1ab/nsp15A1-B	114	T114T	acG	acT	6	6	AY.64	0.003571
ORF1ab/nsp15A1-B	114	T114del	ACG	---	6	6	B.1	0.000055
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	6	6	B.1.1	0.000109
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	6	6	B.1.1.244	0.092308
ORF1ab/nsp15A1-B	114	T114T	acG	acT	5	6	B.1.243	0.000348
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	6	B.1.243	0.00007
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	6	6	B.1.351	0.000178
ORF1ab/nsp15A1-B	114	T114del	ACG	---	6	6	B.1.351	0.000178
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	6	6	P.1.17	0.000971
ORF1ab/nsp15A1-B	114	T114T	acG	acT	6	6	Q.8	0.000989
ORF1ab/nsp15A1-B	114	T114S	Acg	Tcg	5	5	All	0.000001
ORF1ab/nsp15A1-B	114	T114I	aCG	aTT	3	5	All	0.000001
ORF1ab/nsp15A1-B	114	T114I	aCG	aTA	1	5	All	0
ORF1ab/nsp15A1-B	114	T114I	aCG	aTC	1	5	All	0
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	5	5	AY.103	0.000031
ORF1ab/nsp15A1-B	114	T114T	acG	acT	5	5	AY.106	0.001674
ORF1ab/nsp15A1-B	114	T114T	acG	acT	5	5	AY.108	0.005513
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	5	5	AY.117	0.000423
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	5	5	AY.16.1	0.00235
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	5	5	AY.25	0.00003
ORF1ab/nsp15A1-B	114	T114P	Acg	Ccg	5	5	AY.3	0.00005
ORF1ab/nsp15A1-B	114	T114T	acG	acT	3	5	AY.42	0.000121
ORF1ab/nsp15A1-B	114	T114T	acG	acA	2	5	AY.42	0.00008
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	5	5	AY.64	0.002976
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	5	5	AY.75	0.00028
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	5	5	AY.9	0.000338
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	5	5	AY.99.2	0.000461
ORF1ab/nsp15A1-B	114	T114P	Acg	Ccg	5	5	B.1.177	0.000066
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	5	5	B.1.177.60	0.001092
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	5	5	B.1.210	0.010661
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	5	5	B.1.391	0.005637
ORF1ab/nsp15A1-B	114	T114del	ACG	---	5	5	B.1.429	0.000118
ORF1ab/nsp15A1-B	114	T114T	acG	acT	5	5	B.1.580	0.020325
ORF1ab/nsp15A1-B	114	T114del	ACG	---	5	5	B.1.596	0.000436
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	5	5	B.1.596	0.000436
ORF1ab/nsp15A1-B	114	T114del	ACG	---	5	5	B.1.617.2	0.000019
ORF1ab/nsp15A1-B	114	T114T	acG	acT	4	5	C.37	0.000464
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	5	C.37	0.000116
ORF1ab/nsp15A1-B	114	T114T	acG	acT	4	5	D.2	0.0003
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	5	D.2	0.000075
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	5	5	P.1.14	0.000239
ORF1ab/nsp15A1-B	114	T114T	acG	acT	5	5	Q.1	0.000632
ORF1ab/nsp15A1-B	114	T114R	aCg	aGg	4	4	All	0.000001
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	4	4	AY.111	0.000733
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	4	4	AY.118	0.000251
ORF1ab/nsp15A1-B	114	T114T	acG	acT	4	4	AY.12	0.001264
ORF1ab/nsp15A1-B	114	T114del	ACG	---	4	4	AY.3	0.00004
ORF1ab/nsp15A1-B	114	T114T	acG	acT	3	4	AY.4.2	0.000065
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	4	AY.4.2	0.000022
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	4	4	AY.46	0.000416
ORF1ab/nsp15A1-B	114	T114T	acG	acA	4	4	AY.46.1	0.004107
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	4	4	AY.5	0.000083
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	4	4	AY.52	0.003257
ORF1ab/nsp15A1-B	114	T114T	acG	acT	4	4	AY.53	0.00115
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	4	4	AY.9.2	0.000147
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	4	4	B	0.000511
ORF1ab/nsp15A1-B	114	T114T	acG	acA	4	4	B.1.1.280	0.012346
ORF1ab/nsp15A1-B	114	T114T	acG	acA	3	4	B.1.1.284	0.000322
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	4	B.1.1.284	0.000107
ORF1ab/nsp15A1-B	114	T114T	acG	acA	4	4	B.1.1.39	0.002039
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	4	4	B.1.1.516	0.266667
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	4	4	B.1.236	0.008214
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	4	4	B.1.241	0.003247
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	4	4	B.1.258.17	0.000416
ORF1ab/nsp15A1-B	114	T114T	acG	acT	4	4	B.1.338	0.034483
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	4	4	B.1.36.29	0.002069
ORF1ab/nsp15A1-B	114	T114T	acG	acT	4	4	B.1.427	0.000202
ORF1ab/nsp15A1-B	114	T114T	acG	acT	4	4	B.1.564	0.001704
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	4	4	B.1.595	0.001044
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	4	4	B.1.602	0.026144
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	4	4	B.1.617.2	0.000015
ORF1ab/nsp15A1-B	114	T114T	acG	acT	4	4	L.3	0.014184
ORF1ab/nsp15A1-B	114	T114T	acG	acT	4	4	P.1.10	0.001078
ORF1ab/nsp15A1-B	114	T114V	ACg	GTg	4	4	Q.3	0.00058
ORF1ab/nsp15A1-B	114	T114T	acG	acT	4	4	R.1	0.00036
ORF1ab/nsp15A1-B	114	T114T	acG	acT	3	3	A.2.5.1	0.014423
ORF1ab/nsp15A1-B	114	T114G	ACG	GGA	2	3	All	0
ORF1ab/nsp15A1-B	114	T114G	ACg	GGg	1	3	All	0
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	3	3	AY.107	0.001398
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	3	3	AY.12	0.000948
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	3	3	AY.121	0.000406
ORF1ab/nsp15A1-B	114	T114T	acG	acT	3	3	AY.16.1	0.00141
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	3	3	AY.20	0.000117
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	3	3	AY.3.1	0.000256
ORF1ab/nsp15A1-B	114	T114T	acG	acT	3	3	AY.34.1	0.00153
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	3	3	AY.37	0.000948
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	3	AY.39.1	0.000079
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	3	AY.39.1	0.00004
ORF1ab/nsp15A1-B	114	T114P	Acg	Ccg	3	3	AY.4	0.000005
ORF1ab/nsp15A1-B	114	T114del	ACG	---	3	3	AY.43	0.000013
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	3	3	AY.44	0.000018
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	3	3	AY.46.1	0.00308
ORF1ab/nsp15A1-B	114	T114T	acG	acT	3	3	AY.46.5	0.000595
ORF1ab/nsp15A1-B	114	T114T	acG	acT	3	3	AY.5.4	0.00083
ORF1ab/nsp15A1-B	114	T114T	acG	acA	2	3	AY.54	0.000191
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	3	AY.54	0.000095
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	3	3	AY.58	0.002722
ORF1ab/nsp15A1-B	114	T114T	acG	acA	3	3	AY.69	0.00056
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	3	AY.75	0.000112
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	3	AY.75	0.000056
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	3	3	AY.75.1	0.000541
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	3	3	AY.91	0.002191
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	3	AY.93	0.000546
ORF1ab/nsp15A1-B	114	T114T	acG	acC	1	3	AY.93	0.000273
ORF1ab/nsp15A1-B	114	T114T	acG	acA	3	3	B.1.1.176	0.001318
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	3	B.1.1.222	0.000408
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	3	B.1.1.222	0.000204
ORF1ab/nsp15A1-B	114	T114T	acG	acA	2	3	B.1.1.25	0.001137
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	3	B.1.1.25	0.000569
ORF1ab/nsp15A1-B	114	T114T	acG	acT	3	3	B.1.1.265	0.009464
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	3	3	B.1.1.315	0.025424
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	3	B.1.1.372	0.001377
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	3	B.1.1.372	0.000689
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	3	B.1.1.448	0.004065
ORF1ab/nsp15A1-B	114	T114T	acG	acC	1	3	B.1.1.448	0.002033
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	3	3	B.1.1.70	0.001023
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	3	3	B.1.177.7	0.000495
ORF1ab/nsp15A1-B	114	T114T	acG	acT	3	3	B.1.258.17	0.000312
ORF1ab/nsp15A1-B	114	T114T	acG	acA	2	3	B.1.36.18	0.00084
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	3	B.1.36.18	0.00042
ORF1ab/nsp15A1-B	114	T114T	acG	acA	3	3	B.1.362	0.004622
ORF1ab/nsp15A1-B	114	T114T	acG	acT	3	3	B.1.411	0.011111
ORF1ab/nsp15A1-B	114	T114T	acG	acA	2	3	B.1.466.2	0.000782
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	3	B.1.466.2	0.000391
ORF1ab/nsp15A1-B	114	T114del	ACG	---	3	3	B.1.517	0.001281
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	3	3	B.1.564	0.001278
ORF1ab/nsp15A1-B	114	T114T	acG	acA	3	3	B.1.621.1	0.001517
ORF1ab/nsp15A1-B	114	T114T	acG	acA	2	3	B.1.628	0.000705
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	3	B.1.628	0.000352
ORF1ab/nsp15A1-B	114	T114T	acG	acT	3	3	B.1.637	0.000219
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	3	3	B.1.9.5	0.017045
ORF1ab/nsp15A1-B	114	T114T	acG	acT	3	3	C.18	0.007772
ORF1ab/nsp15A1-B	114	T114T	acG	acC	2	3	P.1.1	0.000635
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	3	P.1.1	0.000318
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	3	3	P.1.14	0.000143
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	3	3	Z.1	0.008671
ORF1ab/nsp15A1-B	114	T114G	ACG	GGA	2	2		0.111111
ORF1ab/nsp15A1-B	114	T114V	ACG	GTA	2	2		0.111111
ORF1ab/nsp15A1-B	114	T114L	ACg	TTg	2	2		0.111111
ORF1ab/nsp15A1-B	114	T114del	ACG	---	2	2		0.111111
ORF1ab/nsp15A1-B	114	T114A	AcG	GcA	2	2		0.111111
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	2	2	A.2.2	0.003378
ORF1ab/nsp15A1-B	114	T114L	ACg	TTg	2	2	All	0
ORF1ab/nsp15A1-B	114	T114del1	aCg	a-g	1	2	All	0
ORF1ab/nsp15A1-B	114	T114del1	acG	ac-	1	2	All	0
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	AY.101	0.000981
ORF1ab/nsp15A1-B	114	T114T	acG	acA	2	2	AY.101	0.000981
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	2	2	AY.102	0.000053
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	AY.104	0.003968
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	2	2	AY.105	0.001286
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	AY.106	0.00067
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	2	2	AY.111	0.000366
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	AY.113	0.000285
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	AY.113	0.000285
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	AY.118	0.000125
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	2	2	AY.119	0.000071
ORF1ab/nsp15A1-B	114	T114del	ACG	---	2	2	AY.120	0.000074
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	2	2	AY.120	0.000074
ORF1ab/nsp15A1-B	114	T114del	ACG	---	2	2	AY.121	0.000271
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	AY.13	0.000322
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	AY.16	0.000759
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	AY.22	0.004184
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	AY.36	0.000296
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	AY.39.1	0.000079
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	2	2	AY.4.2.1	0.000298
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	AY.4.4	0.000818
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	AY.41	0.000588
ORF1ab/nsp15A1-B	114	T114R	aCg	aGg	2	2	AY.43	0.000009
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	2	2	AY.43	0.000009
ORF1ab/nsp15A1-B	114	T114del	ACG	---	2	2	AY.44	0.000012
ORF1ab/nsp15A1-B	114	T114P	Acg	Ccg	2	2	AY.44	0.000012
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	AY.46.2	0.001271
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	AY.46.2	0.001271
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	2	2	AY.5	0.000041
ORF1ab/nsp15A1-B	114	T114T	acG	acA	2	2	AY.5.3	0.000675
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	AY.55	0.001835
ORF1ab/nsp15A1-B	114	T114A	AcG	GcA	1	2	AY.59	0.00053
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	2	AY.59	0.00053
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	2	AY.6	0.000041
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	2	AY.6	0.000041
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	AY.60	0.001876
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	AY.62	0.000871
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	AY.67	0.000929
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	AY.68	0.000547
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	AY.7.1	0.000225
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	AY.75.1	0.000361
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	2	AY.85	0.000427
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	2	AY.85	0.000427
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	2	AY.88	0.000884
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	2	AY.88	0.000884
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	AY.9	0.000135
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	AY.90	0.001369
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	AY.93	0.000546
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	AY.94	0.000885
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	AY.95	0.001522
ORF1ab/nsp15A1-B	114	T114T	acG	acA	2	2	B	0.000256
ORF1ab/nsp15A1-B	114	T114S	Acg	Tcg	2	2	B.1.1	0.000036
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	2	2	B.1.1	0.000036
ORF1ab/nsp15A1-B	114	T114del	ACG	---	2	2	B.1.1	0.000036
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	B.1.1.1	0.000653
ORF1ab/nsp15A1-B	114	T114del	ACG	---	2	2	B.1.1.174	0.006757
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	B.1.1.216	0.001781
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	B.1.1.28	0.000622
ORF1ab/nsp15A1-B	114	T114T	acG	acA	2	2	B.1.1.294	0.002532
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	2	2	B.1.1.33	0.000842
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	2	B.1.1.33	0.000421
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	2	B.1.1.33	0.000421
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	B.1.1.41	0.012658
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	B.1.1.413	0.013793
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	B.1.139	0.001466
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	B.1.177.12	0.000303
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	B.1.177.19	0.002861
ORF1ab/nsp15A1-B	114	T114T	acG	acA	2	2	B.1.177.4	0.000422
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	B.1.177.57	0.000562
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	B.1.177.72	0.00678
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	B.1.177.85	0.01087
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	B.1.218	0.010309
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	B.1.221.3	0.001667
ORF1ab/nsp15A1-B	114	T114T	acG	acC	2	2	B.1.222	0.003384
ORF1ab/nsp15A1-B	114	T114del	ACG	---	2	2	B.1.258	0.000133
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	2	2	B.1.258.15	0.037736
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	2	B.1.258.3	0.001675
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	2	B.1.258.3	0.001675
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	B.1.311	0.000549
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	B.1.311	0.000549
ORF1ab/nsp15A1-B	114	T114T	acG	acC	1	2	B.1.349	0.000715
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	2	B.1.349	0.000715
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	2	B.1.36	0.000146
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	2	B.1.36	0.000146
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	B.1.36.29	0.001035
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	B.1.369	0.00057
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	B.1.375	0.001639
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	B.1.404	0.002604
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	B.1.408	0.00738
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	B.1.438.1	0.000215
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	2	2	B.1.460	0.035714
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	B.1.469	0.00722
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	B.1.469	0.00722
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	B.1.523	0.004902
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	2	2	B.1.525	0.000226
ORF1ab/nsp15A1-B	114	T114I	aCG	aTT	2	2	B.1.526	0.000047
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	B.1.568	0.002222
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	B.1.577	0.001375
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	B.1.621	0.000177
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	B.1.627	0.00404
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	D.2	0.00015
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	P.1.12	0.000968
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	P.1.15	0.000465
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	P.1.15	0.000465
ORF1ab/nsp15A1-B	114	T114T	acG	acT	2	2	Q.4	0.00091
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	2	2	R.1	0.00018
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	A.1	0.000282
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	A.2.4	0.003367
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	A.2.5	0.000499
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	A.2.5.2	0.001572
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	A.21	0.00277
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	A.5	0.001923
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	AA.7	0.009174
ORF1ab/nsp15A1-B	114	T114N	aCG	aAC	1	1	All	0
ORF1ab/nsp15A1-B	114	T114E	ACg	GAg	1	1	All	0
ORF1ab/nsp15A1-B	114	T114D	ACG	GAT	1	1	All	0
ORF1ab/nsp15A1-B	114	T114Q	ACG	CAA	1	1	All	0
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	AY.100	0.000046
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	1	1	AY.102	0.000027
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	AY.103	0.000006
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	AY.104	0.001984
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	AY.107	0.000466
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	AY.110	0.000113
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	AY.111	0.000183
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	AY.113	0.000142
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	AY.116	0.000287
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	1	1	AY.117	0.000085
ORF1ab/nsp15A1-B	114	T114T	acG	acC	1	1	AY.14	0.000088
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	AY.14	0.000088
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	AY.16	0.00038
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	AY.2	0.000356
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	AY.23	0.00007
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	1	1	AY.23	0.00007
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	AY.23.1	0.000417
ORF1ab/nsp15A1-B	114	T114S	Acg	Tcg	1	1	AY.24	0.000431
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	1	1	AY.26	0.000028
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	AY.26	0.000028
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	AY.33	0.000067
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	AY.34.1	0.00051
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	AY.37	0.000316
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	AY.38	0.000499
ORF1ab/nsp15A1-B	114	T114V	ACg	GTg	1	1	AY.4	0.000002
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	1	1	AY.4.2	0.000022
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	AY.4.3	0.000842
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	AY.4.4	0.000409
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	AY.4.5	0.000107
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	AY.40	0.000964
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	AY.41	0.000294
ORF1ab/nsp15A1-B	114	T114E	ACg	GAg	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	114	T114P	Acg	Ccg	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	114	T114G	ACg	GGg	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	114	T114I	aCG	aTC	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	1	1	AY.45	0.000122
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	AY.46	0.000104
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	AY.46.3	0.000934
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	AY.48	0.000465
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	AY.49	0.003195
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	AY.54	0.000095
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	AY.55	0.000917
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	AY.55	0.000917
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	AY.57	0.000656
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	AY.59	0.00053
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	AY.59	0.00053
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	AY.60	0.000938
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	AY.60	0.000938
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	AY.62	0.000436
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	AY.63	0.000387
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	AY.65	0.000533
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	AY.65	0.000533
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	AY.67	0.000464
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	AY.68	0.000274
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	1	1	AY.7.1	0.000113
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	AY.70	0.000209
ORF1ab/nsp15A1-B	114	T114P	Acg	Ccg	1	1	AY.70	0.000209
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	AY.72	0.001361
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	AY.84	0.000437
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	AY.86	0.00083
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	AY.89	0.004902
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	AY.9	0.000068
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	AY.9.1	0.000084
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	1	1	AY.9.2	0.000037
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	AY.9.2	0.000037
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	AY.9.2.1	0.001976
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	AY.98.1	0.000048
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	AY.98.1	0.000048
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	AY.99	0.001049
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	AY.99.1	0.001553
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	AY.99.2	0.000092
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	AY.99.2	0.000092
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	AZ.2	0.000821
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	AZ.3	0.00152
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	B	0.000128
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B	0.000128
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	114	T114V	ACg	GTg	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	114	T114P	Acg	Ccg	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	114	T114N	aCG	aAC	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	114	T114del1	acG	ac-	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	B.1.1.1	0.000327
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.1.1	0.000327
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.1.10	0.001115
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.1.101	0.01
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.1.129	0.009174
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.1.159	0.004673
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.1.170	0.001247
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.1.191	0.004762
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	B.1.1.192	0.002309
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.1.200	0.007463
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	B.1.1.203	0.016949
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.1.205	0.003717
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	B.1.1.207	0.001182
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	B.1.1.236	0.006897
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.1.241	0.00207
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.1.25	0.000569
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.1.263	0.001558
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	B.1.1.273	0.006757
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.1.285	0.006536
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.1.288	0.001916
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.1.298	0.000862
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	B.1.1.306	0.000438
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.1.306	0.000438
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.1.316	0.000925
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	1	1	B.1.1.322	0.008772
ORF1ab/nsp15A1-B	114	T114S	Acg	Tcg	1	1	B.1.1.326	0.001761
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.1.348	0.000796
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.1.37	0.000193
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.1.376	0.005952
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.1.383	0.0625
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	1	1	B.1.1.388	0.045455
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.1.39	0.00051
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	B.1.1.397	0.002252
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.1.401	0.066667
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.1.409	0.002833
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	B.1.1.409	0.002833
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.1.421	0.030303
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.1.434	0.000349
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.1.44	0.00241
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.1.46	0.004367
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.1.464	0.001473
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.1.464	0.001473
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.1.50	0.000679
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	1	1	B.1.1.519	0.00004
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	B.1.1.526	0.003546
ORF1ab/nsp15A1-B	114	T114T	acG	acC	1	1	B.1.1.53	0.013699
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	B.1.1.57	0.011494
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.1.59	0.006494
ORF1ab/nsp15A1-B	114	T114P	AcG	CcA	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	114	T114D	ACG	GAT	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	114	T114V	ACG	GTT	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	114	T114I	aCG	aTT	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.111	0.001175
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.115	0.021739
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.140	0.018868
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	B.1.142	0.002899
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.145	0.052632
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.160.29	0.004219
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.177.12	0.000152
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.177.21	0.000076
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.177.42	0.000894
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.177.46	0.000918
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.177.65	0.000665
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	1	1	B.1.177.7	0.000165
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.177.73	0.000566
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.177.79	0.002342
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	1	1	B.1.177.81	0.000189
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.177.82	0.000477
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	B.1.179	0.003759
ORF1ab/nsp15A1-B	114	T114del1	aCg	a-g	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	114	T114R	aCg	aGg	1	1	B.1.2	0.000009
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.210	0.002132
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.212	0.016667
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.214.2	0.0006
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	1	1	B.1.221	0.000071
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	B.1.221	0.000071
ORF1ab/nsp15A1-B	114	T114I	aCG	aTA	1	1	B.1.221	0.000071
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.221.2	0.004016
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	B.1.234	0.000132
ORF1ab/nsp15A1-B	114	T114T	acG	acC	1	1	B.1.234	0.000132
ORF1ab/nsp15A1-B	114	T114T	acG	acC	1	1	B.1.235	0.002519
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	B.1.236	0.002053
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.240	0.000216
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.241	0.000812
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	B.1.243	0.00007
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	B.1.243	0.00007
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.258.14	0.00098
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	B.1.258.5	0.008772
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	B.1.258.6	0.019608
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.258.7	0.001912
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	B.1.260	0.003344
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.265	0.001271
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.280	0.007143
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.284	0.013158
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.309	0.047619
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.319	0.003049
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.320	0.001245
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.35	0.008475
ORF1ab/nsp15A1-B	114	T114A	AcG	GcA	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	114	T114Q	ACG	CAA	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	B.1.351.2	0.000303
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.351.3	0.000876
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.356	0.001727
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.36	0.000146
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	B.1.36.10	0.004785
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	B.1.36.18	0.00042
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	B.1.362.2	0.004717
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.371	0.001122
ORF1ab/nsp15A1-B	114	T114T	acG	acC	1	1	B.1.396	0.000706
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.399	0.001934
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	B.1.409	0.000781
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.411	0.003704
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	B.1.416.1	0.001563
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	B.1.427	0.00005
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.453	0.003236
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	B.1.456	0.003268
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	B.1.462	0.007246
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.470	0.001404
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	B.1.470	0.001404
ORF1ab/nsp15A1-B	114	T114A	AcG	GcA	1	1	B.1.497	0.000315
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.498	0.020408
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.502	0.052632
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	B.1.503	0.002488
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	B.1.523	0.002451
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	B.1.524	0.001406
ORF1ab/nsp15A1-B	114	T114S	Acg	Tcg	1	1	B.1.524	0.001406
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.537	0.02
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.561	0.000397
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	B.1.564	0.000426
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	B.1.568	0.001111
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.575	0.000303
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	B.1.575	0.000303
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	B.1.577	0.000687
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	B.1.588	0.00091
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.591	0.010638
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	B.1.596	0.000087
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.600	0.005848
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.1.609	0.000479
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.1.609	0.000479
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	B.1.617.1	0.000129
ORF1ab/nsp15A1-B	114	T114R	aCg	aGg	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	114	T114P	Acg	Ccg	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	B.1.620	0.000946
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	B.1.630	0.005236
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	B.1.636	0.006711
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.20	0.023256
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	B.3	0.000831
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.4	0.002208
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	1	1	B.40	0.000364
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.40	0.000364
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.47	0.020408
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.6	0.00091
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	B.6.6	0.000889
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.6.6	0.000889
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	B.60	0.015873
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	C.25	0.125
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	C.30	0.001727
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	C.36	0.000911
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	C.36.3	0.000567
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	C.37	0.000116
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	D.3	0.005917
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	N.4	0.004255
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	N.5	0.001767
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	N.5	0.001767
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	P.1	0.000016
ORF1ab/nsp15A1-B	114	T114A	Acg	Gcg	1	1	P.1	0.000016
ORF1ab/nsp15A1-B	114	T114K	aCg	aAg	1	1	P.1	0.000016
ORF1ab/nsp15A1-B	114	T114T	acG	acA	1	1	P.1.13	0.000898
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	P.1.15	0.000232
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	P.1.16	0.000374
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	P.1.7	0.000319
ORF1ab/nsp15A1-B	114	T114M	aCg	aTg	1	1	Q.1	0.000126
ORF1ab/nsp15A1-B	114	T114del	ACG	---	1	1	Q.1	0.000126
ORF1ab/nsp15A1-B	114	T114T	acG	acT	1	1	Q.2	0.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.