CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp15A1-B : CodonNum = 112

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp15A1-B	112	T112I	T6564I	nonsyn	aCt	aTt	7808	7807	0.999872	19954-19956
ORF1ab/nsp15A1-B	112	T112I	T6564I	nonsyn	aCT	aTA	7808	1	0.000128074	19954-19956
ORF1ab/nsp15A1-B	112	T112T	T6564T	syn	acT	acC	554	329	0.593863	19954-19956
ORF1ab/nsp15A1-B	112	T112T	T6564T	syn	acT	acA	554	213	0.384477	19954-19956
ORF1ab/nsp15A1-B	112	T112T	T6564T	syn	acT	acG	554	12	0.0216607	19954-19956
ORF1ab/nsp15A1-B	112	T112del	T6564del	del	ACT	---	178	178	1	19954-19956
ORF1ab/nsp15A1-B	112	T112N	T6564N	nonsyn	aCt	aAt	158	155	0.981013	19954-19956
ORF1ab/nsp15A1-B	112	T112N	T6564N	nonsyn	aCT	aAC	158	3	0.0189873	19954-19956
ORF1ab/nsp15A1-B	112	T112A	T6564A	nonsyn	Act	Gct	33	31	0.939394	19954-19956
ORF1ab/nsp15A1-B	112	T112A	T6564A	nonsyn	AcT	GcA	33	1	0.030303	19954-19956
ORF1ab/nsp15A1-B	112	T112A	T6564A	nonsyn	AcT	GcC	33	1	0.030303	19954-19956
ORF1ab/nsp15A1-B	112	T112S	T6564S	nonsyn	Act	Tct	16	9	0.5625	19954-19956
ORF1ab/nsp15A1-B	112	T112S	T6564S	nonsyn	aCt	aGt	16	6	0.375	19954-19956
ORF1ab/nsp15A1-B	112	T112S	T6564S	nonsyn	AcT	TcC	16	1	0.0625	19954-19956
ORF1ab/nsp15A1-B	112	T112del1	T6564del1	del	aCT	aT-	7	4	0.571429	19954-19956
ORF1ab/nsp15A1-B	112	T112del1	T6564del1	del	Act	-ct	7	1	0.142857	19954-19956
ORF1ab/nsp15A1-B	112	T112del1	T6564del1	del	ACT	-NN	7	1	0.142857	19954-19956
ORF1ab/nsp15A1-B	112	T112del1	T6564del1	del	aCt	a-t	7	1	0.142857	19954-19956
ORF1ab/nsp15A1-B	112	T112P	T6564P	nonsyn	AcT	CcC	6	3	0.5	19954-19956
ORF1ab/nsp15A1-B	112	T112P	T6564P	nonsyn	Act	Cct	6	3	0.5	19954-19956
ORF1ab/nsp15A1-B	112	T112del2	T6564del2	del	ACt	--t	3	2	0.666667	19954-19956
ORF1ab/nsp15A1-B	112	T112del2	T6564del2	del	aCT	a--	3	1	0.333333	19954-19956
ORF1ab/nsp15A1-B	112	T112H	T6564H	nonsyn	ACT	CAC	2	2	1	19954-19956
ORF1ab/nsp15A1-B	112	T112C	T6564C	nonsyn	ACt	TGt	2	2	1	19954-19956
ORF1ab/nsp15A1-B	112	T112D	T6564D	nonsyn	ACt	GAt	2	2	1	19954-19956
ORF1ab/nsp15A1-B	112	T112L	T6564L	nonsyn	ACt	CTt	2	1	0.5	19954-19956
ORF1ab/nsp15A1-B	112	T112L	T6564L	nonsyn	ACT	CTG	2	1	0.5	19954-19956
ORF1ab/nsp15A1-B	112	T112R	T6564R	nonsyn	ACT	CGA	1	1	1	19954-19956
ORF1ab/nsp15A1-B	112	T112F	T6564F	nonsyn	ACt	TTt	1	1	1	19954-19956
ORF1ab/nsp15A1-B	112	T112K	T6564K	nonsyn	aCT	aAA	1	1	1	19954-19956
ORF1ab/nsp15A1-B	112	T112V	T6564V	nonsyn	ACt	GTt	1	1	1	19954-19956

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	7807	7808	All	0.001493
ORF1ab/nsp15A1-B	112	T112I	aCT	aTA	1	7808	All	0
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1642	1643	B.1.1.7	0.00147
ORF1ab/nsp15A1-B	112	T112I	aCT	aTA	1	1643	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1503	1503	AY.4	0.002339
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	876	876	AY.43	0.003881
ORF1ab/nsp15A1-B	112	T112T	acT	acC	329	554	All	0.000063
ORF1ab/nsp15A1-B	112	T112T	acT	acA	213	554	All	0.000041
ORF1ab/nsp15A1-B	112	T112T	acT	acG	12	554	All	0.000002
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	401	401	B.1.177.7	0.066106
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	327	327	AW.1	0.996951
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	312	312	B.1.2	0.002747
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	275	275	B.1.617.2	0.001035
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	183	183	AY.103	0.001136
ORF1ab/nsp15A1-B	112	T112del	ACT	---	178	178	All	0.000034
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	171	171	B.1.177.12	0.025941
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	155	158	All	0.00003
ORF1ab/nsp15A1-B	112	T112N	aCT	aAC	3	158	All	0.000001
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	155	155	AY.3.1	0.013215
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	100	100	AY.25	0.000601
ORF1ab/nsp15A1-B	112	T112T	acT	acA	66	95	AY.99.2	0.006082
ORF1ab/nsp15A1-B	112	T112T	acT	acC	29	95	AY.99.2	0.002673
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	90	90	AY.74	0.010408
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	84	84	AY.27	0.005437
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	77	77	P.1	0.001213
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	75	75	B.1.369	0.021392
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	73	73	P.1.1	0.023189
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	69	69	AY.44	0.00042
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	59	59	B.1.526	0.001387
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	57	57	B.1	0.000522
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	55	55	B.1.438	0.359477
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	53	53	B.1.177	0.000698
ORF1ab/nsp15A1-B	112	T112T	acT	acC	26	52	B.1.617.2	0.000098
ORF1ab/nsp15A1-B	112	T112T	acT	acA	25	52	B.1.617.2	0.000094
ORF1ab/nsp15A1-B	112	T112T	acT	acG	1	52	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	49	49	AY.102	0.001299
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	48	48	AY.33	0.003205
ORF1ab/nsp15A1-B	112	T112del	ACT	---	47	47	B.1.1.7	0.000042
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	47	47	B.1.429	0.001106
ORF1ab/nsp15A1-B	112	T112del	ACT	---	46	46	B.1.2	0.000405
ORF1ab/nsp15A1-B	112	T112T	acT	acA	25	42	B.1.1.7	0.000022
ORF1ab/nsp15A1-B	112	T112T	acT	acC	17	42	B.1.1.7	0.000015
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	42	42	B.1.234	0.005542
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	41	41	B.1.160	0.001279
ORF1ab/nsp15A1-B	112	T112T	acT	acC	22	36	AY.43	0.000097
ORF1ab/nsp15A1-B	112	T112T	acT	acA	14	36	AY.43	0.000062
ORF1ab/nsp15A1-B	112	T112T	acT	acC	36	36	B.1.177.62	0.042908
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	35	35	B.1.1.222	0.00714
ORF1ab/nsp15A1-B	112	T112A	Act	Gct	31	33	All	0.000006
ORF1ab/nsp15A1-B	112	T112A	AcT	GcC	1	33	All	0
ORF1ab/nsp15A1-B	112	T112A	AcT	GcA	1	33	All	0
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	33	33	B.1.1	0.000599
ORF1ab/nsp15A1-B	112	T112T	acT	acC	27	32	AY.44	0.000164
ORF1ab/nsp15A1-B	112	T112T	acT	acA	5	32	AY.44	0.00003
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	32	32	AY.98.1	0.00155
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	30	30	AY.119	0.001059
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	26	26	B.1.1.464	0.038292
ORF1ab/nsp15A1-B	112	T112T	acT	acC	25	25	AY.102	0.000663
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	25	25	AY.3	0.000249
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	25	25	AY.39	0.000618
ORF1ab/nsp15A1-B	112	T112T	acT	acC	23	23	AY.119	0.000812
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	22	22	B.1.241	0.017857
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	21	21	AY.4	0.000033
ORF1ab/nsp15A1-B	112	T112T	acT	acA	15	21	AY.4	0.000023
ORF1ab/nsp15A1-B	112	T112T	acT	acC	6	21	AY.4	0.000009
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	21	21	B.1.36	0.003064
ORF1ab/nsp15A1-B	112	T112T	acT	acA	20	20	AY.29	0.000315
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	20	20	B.1.221	0.001421
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	19	19	B.1.243	0.001322
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	17	17	AY.26	0.000481
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	17	17	AY.29	0.000268
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	17	17	AY.4.2	0.000369
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	17	17	AY.5	0.000351
ORF1ab/nsp15A1-B	112	T112S	Act	Tct	9	16	All	0.000002
ORF1ab/nsp15A1-B	112	T112S	aCt	aGt	6	16	All	0.000001
ORF1ab/nsp15A1-B	112	T112S	AcT	TcC	1	16	All	0
ORF1ab/nsp15A1-B	112	T112T	acT	acA	11	16	AY.103	0.000068
ORF1ab/nsp15A1-B	112	T112T	acT	acC	5	16	AY.103	0.000031
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	16	16	AY.9.1	0.00134
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	14	14	AY.100	0.000644
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	14	14	B.1.177.44	0.007265
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	14	14	B.1.177.82	0.006683
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	14	14	B.1.2	0.000123
ORF1ab/nsp15A1-B	112	T112T	acT	acC	14	14	B.6.6	0.012444
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	13	13	A	0.005031
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	13	13	AY.120	0.000483
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	13	13	AY.120.1	0.004173
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	13	13	B.1.351	0.000386
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	13	13	B.1.427	0.000656
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	12	12	AY.29	0.000189
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	12	12	B.1.1.298	0.010345
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	12	12	B.1.177.18	0.013921
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	11	11	AY.121	0.001488
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	11	11	AY.23	0.000767
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	11	11	AY.45	0.001339
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	11	11	B.1.621	0.000974
ORF1ab/nsp15A1-B	112	T112T	acT	acC	10	10	AU.1	0.012658
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	9	9	AY.42	0.000362
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	9	9	AY.9.2	0.000331
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	9	9	B.1.1.214	0.000499
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	9	9	B.1.293	0.1125
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	8	8	AY.20	0.000311
ORF1ab/nsp15A1-B	112	T112T	acT	acC	7	8	AY.25	0.000042
ORF1ab/nsp15A1-B	112	T112T	acT	acG	1	8	AY.25	0.000006
ORF1ab/nsp15A1-B	112	T112A	Act	Gct	8	8	AY.4	0.000012
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	8	8	AY.92	0.002298
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	8	8	B.1.1.318	0.002414
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	8	8	B.1.177.60	0.001747
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	8	8	B.1.177.75	0.008325
ORF1ab/nsp15A1-B	112	T112T	acT	acC	7	8	B.1.258	0.000466
ORF1ab/nsp15A1-B	112	T112T	acT	acA	1	8	B.1.258	0.000067
ORF1ab/nsp15A1-B	112	T112del	ACT	---	8	8	B.1.351	0.000238
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	8	8	D.2	0.0006
ORF1ab/nsp15A1-B	112	T112del1	aCT	aT-	4	7	All	0.000001
ORF1ab/nsp15A1-B	112	T112del1	ACT	-NN	1	7	All	0
ORF1ab/nsp15A1-B	112	T112del1	Act	-ct	1	7	All	0
ORF1ab/nsp15A1-B	112	T112del1	aCt	a-t	1	7	All	0
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	7	7	AY.34	0.000679
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	7	7	AY.46	0.000729
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	7	7	AY.47	0.000218
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	7	7	AY.99.2	0.000645
ORF1ab/nsp15A1-B	112	T112T	acT	acC	7	7	B.1.1.17	0.116667
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	7	7	B.1.1.519	0.000278
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	7	7	B.1.128	0.004447
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	7	7	B.1.466.2	0.002739
ORF1ab/nsp15A1-B	112	T112del	ACT	---	7	7	B.1.526	0.000165
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	7	7	B.1.561	0.002779
ORF1ab/nsp15A1-B	112	T112P	Act	Cct	3	6	All	0.000001
ORF1ab/nsp15A1-B	112	T112P	AcT	CcC	3	6	All	0.000001
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	6	6	AY.30	0.002374
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	6	6	AY.36	0.000889
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	6	6	AY.43	0.000027
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	6	6	AY.98	0.000474
ORF1ab/nsp15A1-B	112	T112del	ACT	---	6	6	B.1	0.000055
ORF1ab/nsp15A1-B	112	T112T	acT	acC	4	6	B.1	0.000037
ORF1ab/nsp15A1-B	112	T112T	acT	acA	2	6	B.1	0.000018
ORF1ab/nsp15A1-B	112	T112T	acT	acC	6	6	P.1	0.000095
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	6	6	P.1.10	0.001617
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	5	5	AY.113	0.000712
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	5	5	AY.117	0.000423
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	5	5	AY.118	0.000313
ORF1ab/nsp15A1-B	112	T112T	acT	acA	5	5	AY.39	0.000124
ORF1ab/nsp15A1-B	112	T112T	acT	acG	4	5	AY.5	0.000083
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	5	AY.5	0.000021
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	5	5	AY.75	0.00028
ORF1ab/nsp15A1-B	112	T112T	acT	acC	5	5	B.1.1.189	0.007564
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	5	5	B.1.177.43	0.007386
ORF1ab/nsp15A1-B	112	T112T	acT	acG	2	5	B.1.2	0.000018
ORF1ab/nsp15A1-B	112	T112T	acT	acA	2	5	B.1.2	0.000018
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	5	B.1.2	0.000009
ORF1ab/nsp15A1-B	112	T112T	acT	acC	5	5	B.1.427	0.000252
ORF1ab/nsp15A1-B	112	T112del	ACT	---	5	5	B.1.429	0.000118
ORF1ab/nsp15A1-B	112	T112del	ACT	---	5	5	B.1.596	0.000436
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	5	5	B.1.637	0.000365
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	5	5	P.1.7	0.001596
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	4	4	A.2.5	0.001996
ORF1ab/nsp15A1-B	112	T112T	acT	acC	4	4	AY.100	0.000184
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	4	4	AY.14	0.000352
ORF1ab/nsp15A1-B	112	T112del	ACT	---	4	4	AY.3	0.00004
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	3	4	B.1	0.000027
ORF1ab/nsp15A1-B	112	T112N	aCT	aAC	1	4	B.1	0.000009
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	4	4	B.1.1.33	0.001684
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	4	4	B.1.1.354	0.017544
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	4	4	B.1.1.372	0.002755
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	4	4	B.1.1.63	0.001543
ORF1ab/nsp15A1-B	112	T112A	Act	Gct	4	4	B.1.1.7	0.000004
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	4	4	B.1.408	0.01476
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	4	4	B.1.438.1	0.000429
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	4	4	B.1.564	0.001704
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	4	4	B.1.596	0.000349
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	4	4	B.1.617.2	0.000015
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	4	4	C.37	0.000464
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	4	4	P.1.15	0.000929
ORF1ab/nsp15A1-B	112	T112del2	ACt	--t	2	3	All	0
ORF1ab/nsp15A1-B	112	T112del2	aCT	a--	1	3	All	0
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	3	3	AY.109	0.002219
ORF1ab/nsp15A1-B	112	T112S	Act	Tct	3	3	AY.3	0.00003
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	3	3	AY.33	0.0002
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	3	3	AY.4.2	0.000065
ORF1ab/nsp15A1-B	112	T112del	ACT	---	3	3	AY.43	0.000013
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	3	3	AY.44	0.000018
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	3	3	AY.65	0.001599
ORF1ab/nsp15A1-B	112	T112S	aCt	aGt	3	3	B.1	0.000027
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	3	3	B.1.1	0.000054
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	3	3	B.1.1.157	0.00274
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	3	3	B.1.1.216	0.002671
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	3	3	B.1.1.220	0.005576
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	3	3	B.1.160.8	0.003866
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	3	3	B.1.177.10	0.002634
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	3	3	B.1.281	0.065217
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	3	3	B.1.404	0.003906
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	3	3	B.1.453	0.009709
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	3	3	B.1.470	0.004213
ORF1ab/nsp15A1-B	112	T112del	ACT	---	3	3	B.1.517	0.001281
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	3	3	B.1.582	0.001472
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	3	3	B.1.609	0.001438
ORF1ab/nsp15A1-B	112	T112del	ACT	---	3	3	B.1.617.2	0.000011
ORF1ab/nsp15A1-B	112	T112A	Act	Gct	2	3	B.1.617.2	0.000008
ORF1ab/nsp15A1-B	112	T112A	AcT	GcC	1	3	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	3	3	Q.2	0.00184
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	3	3	Q.3	0.000435
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	3	3	Q.8	0.000495
ORF1ab/nsp15A1-B	112	T112D	ACt	GAt	2	2		0.111111
ORF1ab/nsp15A1-B	112	T112N	aCT	aAC	2	2		0.111111
ORF1ab/nsp15A1-B	112	T112A	Act	Gct	2	2		0.111111
ORF1ab/nsp15A1-B	112	T112D	ACt	GAt	2	2	All	0
ORF1ab/nsp15A1-B	112	T112H	ACT	CAC	2	2	All	0
ORF1ab/nsp15A1-B	112	T112C	ACt	TGt	2	2	All	0
ORF1ab/nsp15A1-B	112	T112L	ACT	CTG	1	2	All	0
ORF1ab/nsp15A1-B	112	T112L	ACt	CTt	1	2	All	0
ORF1ab/nsp15A1-B	112	T112T	acT	acC	2	2	AU.2	0.004843
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	AY.1	0.000791
ORF1ab/nsp15A1-B	112	T112T	acT	acC	2	2	AY.105	0.001286
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	AY.114	0.000462
ORF1ab/nsp15A1-B	112	T112del	ACT	---	2	2	AY.120	0.000074
ORF1ab/nsp15A1-B	112	T112T	acT	acA	1	2	AY.120	0.000037
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	2	AY.120	0.000037
ORF1ab/nsp15A1-B	112	T112del	ACT	---	2	2	AY.121	0.000271
ORF1ab/nsp15A1-B	112	T112T	acT	acC	2	2	AY.2	0.000712
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	2	2	AY.20	0.000078
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	2	2	AY.23	0.000139
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	2	2	AY.3	0.00002
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	2	AY.34	0.000097
ORF1ab/nsp15A1-B	112	T112T	acT	acG	1	2	AY.34	0.000097
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	AY.34.1	0.00102
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	AY.39.1	0.000079
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	AY.4.2.1	0.000298
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	2	2	AY.4.5	0.000215
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	AY.41	0.000588
ORF1ab/nsp15A1-B	112	T112S	Act	Tct	1	2	AY.43	0.000004
ORF1ab/nsp15A1-B	112	T112S	AcT	TcC	1	2	AY.43	0.000004
ORF1ab/nsp15A1-B	112	T112del	ACT	---	2	2	AY.44	0.000012
ORF1ab/nsp15A1-B	112	T112P	AcT	CcC	1	2	AY.46.6	0.000072
ORF1ab/nsp15A1-B	112	T112P	Act	Cct	1	2	AY.46.6	0.000072
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	AY.5.3	0.000675
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	AY.6	0.000082
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	AY.61	0.00021
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	AY.62	0.000871
ORF1ab/nsp15A1-B	112	T112T	acT	acA	2	2	AY.7	0.000392
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	AY.71	0.00095
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	AY.88	0.001768
ORF1ab/nsp15A1-B	112	T112T	acT	acA	2	2	AY.98.1	0.000097
ORF1ab/nsp15A1-B	112	T112A	Act	Gct	2	2	B.1	0.000018
ORF1ab/nsp15A1-B	112	T112del	ACT	---	2	2	B.1.1	0.000036
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.1.168	0.052632
ORF1ab/nsp15A1-B	112	T112del	ACT	---	2	2	B.1.1.174	0.006757
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.1.180	0.021505
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.1.207	0.002364
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.1.25	0.001137
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.1.284	0.000215
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.1.306	0.000877
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.1.316	0.00185
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.1.317	0.000823
ORF1ab/nsp15A1-B	112	T112A	AcT	GcA	1	2	B.1.1.326	0.001761
ORF1ab/nsp15A1-B	112	T112A	Act	Gct	1	2	B.1.1.326	0.001761
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.1.351	0.005587
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.1.411	0.029412
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.1.434	0.000697
ORF1ab/nsp15A1-B	112	T112T	acT	acA	1	2	B.1.1.519	0.00004
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	2	B.1.1.519	0.00004
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	2	2	B.1.1.7	0.000002
ORF1ab/nsp15A1-B	112	T112C	ACt	TGt	2	2	B.1.1.7	0.000002
ORF1ab/nsp15A1-B	112	T112del2	aCT	a--	1	2	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	112	T112del2	ACt	--t	1	2	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	112	T112del1	ACT	-NN	1	2	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	112	T112del1	aCT	aT-	1	2	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.1.8	0.007168
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	2	2	B.1.160	0.000062
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.177.35	0.001382
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.177.73	0.001133
ORF1ab/nsp15A1-B	112	T112T	acT	acC	2	2	B.1.177.75	0.002081
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.177.86	0.000367
ORF1ab/nsp15A1-B	112	T112A	Act	Gct	2	2	B.1.177.9	0.002663
ORF1ab/nsp15A1-B	112	T112T	acT	acA	2	2	B.1.189	0.008584
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.189	0.008584
ORF1ab/nsp15A1-B	112	T112A	Act	Gct	2	2	B.1.2	0.000018
ORF1ab/nsp15A1-B	112	T112S	Act	Tct	1	2	B.1.2	0.000009
ORF1ab/nsp15A1-B	112	T112S	aCt	aGt	1	2	B.1.2	0.000009
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.214	0.007326
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.221.4	0.008333
ORF1ab/nsp15A1-B	112	T112T	acT	acA	2	2	B.1.234	0.000264
ORF1ab/nsp15A1-B	112	T112del	ACT	---	2	2	B.1.258	0.000133
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.36.29	0.001035
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.36.38	0.003284
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.420	0.020833
ORF1ab/nsp15A1-B	112	T112T	acT	acC	2	2	B.1.429	0.000047
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.456	0.006536
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.525	0.000226
ORF1ab/nsp15A1-B	112	T112T	acT	acC	2	2	B.1.526	0.000047
ORF1ab/nsp15A1-B	112	T112A	Act	Gct	2	2	B.1.526	0.000047
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.564.1	0.003155
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.568	0.002222
ORF1ab/nsp15A1-B	112	T112T	acT	acC	2	2	B.1.582	0.000981
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.617.1	0.000258
ORF1ab/nsp15A1-B	112	T112del1	aCT	aT-	2	2	B.1.617.2	0.000008
ORF1ab/nsp15A1-B	112	T112S	aCt	aGt	1	2	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	112	T112S	Act	Tct	1	2	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.1.621.1	0.001012
ORF1ab/nsp15A1-B	112	T112T	acT	acC	2	2	B.1.637	0.000146
ORF1ab/nsp15A1-B	112	T112T	acT	acA	2	2	B.1.93	0.001867
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	B.40	0.000729
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	C.36.3	0.001134
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	N.5	0.003534
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	P.1.2	0.002312
ORF1ab/nsp15A1-B	112	T112T	acT	acC	2	2	P.2	0.000373
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	2	2	P.3	0.00319
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	A.2.5.2	0.001572
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	1	AD.2	0.000219
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AL.1	0.012987
ORF1ab/nsp15A1-B	112	T112V	ACt	GTt	1	1	All	0
ORF1ab/nsp15A1-B	112	T112K	aCT	aAA	1	1	All	0
ORF1ab/nsp15A1-B	112	T112F	ACt	TTt	1	1	All	0
ORF1ab/nsp15A1-B	112	T112R	ACT	CGA	1	1	All	0
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.10	0.00053
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	AY.100	0.000046
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.101	0.00049
ORF1ab/nsp15A1-B	112	T112del1	aCT	aT-	1	1	AY.102	0.000027
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	1	AY.107	0.000466
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	AY.107	0.000466
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.110	0.000113
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.111	0.000183
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	AY.113	0.000142
ORF1ab/nsp15A1-B	112	T112T	acT	acA	1	1	AY.117	0.000085
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	1	1	AY.117	0.000085
ORF1ab/nsp15A1-B	112	T112P	Act	Cct	1	1	AY.119	0.000035
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.12	0.000316
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.2	0.000356
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.23.1	0.000417
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.24	0.000431
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	AY.25	0.000006
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	1	1	AY.26	0.000028
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	1	AY.26	0.000028
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	1	AY.3	0.00001
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	1	AY.3.1	0.000085
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.32	0.000532
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	1	AY.38	0.000499
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.4.5	0.000107
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.40	0.000964
ORF1ab/nsp15A1-B	112	T112A	Act	Gct	1	1	AY.42	0.00004
ORF1ab/nsp15A1-B	112	T112P	AcT	CcC	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	112	T112del1	Act	-ct	1	1	AY.43	0.000004
ORF1ab/nsp15A1-B	112	T112A	Act	Gct	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	112	T112F	ACt	TTt	1	1	AY.44	0.000006
ORF1ab/nsp15A1-B	112	T112T	acT	acA	1	1	AY.45	0.000122
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.46.4	0.000165
ORF1ab/nsp15A1-B	112	T112H	ACT	CAC	1	1	AY.46.6	0.000072
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.46.6	0.000072
ORF1ab/nsp15A1-B	112	T112T	acT	acA	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	AY.47	0.000031
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.5.4	0.000277
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	1	1	AY.54	0.000095
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.54	0.000095
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	AY.55	0.000917
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	1	1	AY.55	0.000917
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.57	0.000656
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.67	0.000464
ORF1ab/nsp15A1-B	112	T112R	ACT	CGA	1	1	AY.67	0.000464
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	1	AY.68	0.000274
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.7.1	0.000113
ORF1ab/nsp15A1-B	112	T112T	acT	acA	1	1	AY.74	0.000116
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.75.1	0.00018
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.79	0.001211
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.84	0.000437
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	AY.84	0.000437
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	1	AY.84	0.000437
ORF1ab/nsp15A1-B	112	T112T	acT	acA	1	1	AY.85	0.000427
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.9	0.000068
ORF1ab/nsp15A1-B	112	T112A	Act	Gct	1	1	AY.9.2	0.000037
ORF1ab/nsp15A1-B	112	T112T	acT	acA	1	1	AY.9.2	0.000037
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.91	0.00073
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.97	0.001701
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	AY.99	0.001049
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	AY.99	0.001049
ORF1ab/nsp15A1-B	112	T112T	acT	acG	1	1	AY.99	0.001049
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	AZ.2	0.000821
ORF1ab/nsp15A1-B	112	T112S	Act	Tct	1	1	AZ.2	0.000821
ORF1ab/nsp15A1-B	112	T112del1	aCt	a-t	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	112	T112H	ACT	CAC	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	112	T112P	AcT	CcC	1	1	B.1	0.000009
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	1	B.1.1	0.000018
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.1.10	0.001115
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	B.1.1.192	0.002309
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	1	B.1.1.204	0.00304
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	B.1.1.207	0.001182
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	1	1	B.1.1.214	0.000055
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.1.28	0.000311
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.1.289	0.002083
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	B.1.1.306	0.000438
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.1.312	0.001912
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	1	1	B.1.1.317	0.000412
ORF1ab/nsp15A1-B	112	T112T	acT	acA	1	1	B.1.1.326	0.001761
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.1.333	0.001076
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.1.343	0.020833
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.1.368	0.003086
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.1.37	0.000193
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.1.409	0.002833
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.1.50	0.000679
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	1	1	B.1.1.500	0.02
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.1.521	0.005348
ORF1ab/nsp15A1-B	112	T112S	Act	Tct	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	112	T112K	aCT	aAA	1	1	B.1.1.7	0.000001
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.110.3	0.000718
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.112	0.005181
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	1	1	B.1.13	0.002375
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	1	B.1.160.26	0.002421
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.160.32	0.004292
ORF1ab/nsp15A1-B	112	T112T	acT	acA	1	1	B.1.177	0.000013
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.177.16	0.000664
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.177.21	0.000076
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	1	B.1.177.33	0.001645
ORF1ab/nsp15A1-B	112	T112A	Act	Gct	1	1	B.1.177.40	0.005155
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	1	B.1.177.44	0.000519
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.177.50	0.004695
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	1	B.1.177.8	0.000752
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	B.1.179	0.003759
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.199	0.004132
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	1	1	B.1.221	0.000071
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	B.1.234	0.000132
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	1	B.1.243	0.00007
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	B.1.243	0.00007
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.258	0.000067
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.258.3	0.001675
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.258.9	0.005
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.280	0.007143
ORF1ab/nsp15A1-B	112	T112T	acT	acA	1	1	B.1.3	0.002618
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.311	0.000275
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.329	0.000608
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.340	0.004292
ORF1ab/nsp15A1-B	112	T112del2	ACt	--t	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	112	T112A	Act	Gct	1	1	B.1.351	0.00003
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.351.2	0.000303
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	B.1.36.1	0.00114
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.36.17	0.000494
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.389	0.001002
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.398	0.002976
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.409	0.000781
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	B.1.409	0.000781
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	1	B.1.409	0.000781
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	B.1.416.1	0.001563
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	B.1.427	0.00005
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	1	1	B.1.429	0.000024
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.450	0.011364
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.497	0.000315
ORF1ab/nsp15A1-B	112	T112T	acT	acG	1	1	B.1.497	0.000315
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	B.1.523	0.002451
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	1	1	B.1.524	0.001406
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	B.1.524	0.001406
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.540	0.009709
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	1	B.1.560	0.00463
ORF1ab/nsp15A1-B	112	T112S	aCt	aGt	1	1	B.1.568	0.001111
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	1	B.1.575	0.000303
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	B.1.577	0.000687
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.595	0.000261
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	1	B.1.609	0.000479
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.610	0.003546
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	B.1.617.1	0.000129
ORF1ab/nsp15A1-B	112	T112L	ACT	CTG	1	1	B.1.617.1	0.000129
ORF1ab/nsp15A1-B	112	T112V	ACt	GTt	1	1	B.1.617.2	0.000004
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	B.1.620	0.000946
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	B.1.630	0.005236
ORF1ab/nsp15A1-B	112	T112N	aCt	aAt	1	1	B.1.631	0.003367
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.1.96	0.018868
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	B.3	0.000831
ORF1ab/nsp15A1-B	112	T112T	acT	acA	1	1	C.37	0.000116
ORF1ab/nsp15A1-B	112	T112S	Act	Tct	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	112	T112P	Act	Cct	1	1	D.2	0.000075
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	N.4	0.004255
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	P.1	0.000016
ORF1ab/nsp15A1-B	112	T112A	Act	Gct	1	1	P.1	0.000016
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	P.1.10.1	0.00813
ORF1ab/nsp15A1-B	112	T112T	acT	acC	1	1	P.1.15	0.000232
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	P.1.15	0.000232
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	P.1.16	0.000374
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	P.2	0.000187
ORF1ab/nsp15A1-B	112	T112L	ACt	CTt	1	1	P.3	0.001595
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	P.4	0.003802
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	Q.1	0.000126
ORF1ab/nsp15A1-B	112	T112del	ACT	---	1	1	Q.1	0.000126
ORF1ab/nsp15A1-B	112	T112T	acT	acG	1	1	Q.3	0.000145
ORF1ab/nsp15A1-B	112	T112I	aCt	aTt	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.