CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 491 | Y491Y | Y6416Y | syn | taC | taT | 4409 | 4409 | 1 | 19510-19512 |
Details of the mutation Y491Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 4409 | 4409 | All | 0.000843 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1655 | 1655 | B.1.36.36 | 0.996388 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 983 | 983 | B.1.2 | 0.008656 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 460 | 460 | AY.4 | 0.000716 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 378 | 378 | B.1.1.7 | 0.000338 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 115 | 115 | AY.25 | 0.000692 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 85 | 85 | B.1.617.2 | 0.00032 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 71 | 71 | AY.43 | 0.000315 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 48 | 48 | C.37 | 0.005571 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 44 | 44 | B.1.612 | 0.116711 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 40 | 40 | AY.103 | 0.000248 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 30 | 30 | B.1 | 0.000275 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 29 | 29 | AY.44 | 0.000177 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 27 | 27 | B.1.160 | 0.000842 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 26 | 26 | AY.3 | 0.000259 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 25 | 25 | AY.39 | 0.000618 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 25 | 25 | B.1.177 | 0.000329 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 24 | 24 | B.1.1 | 0.000435 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 20 | 20 | B.1.279 | 0.010272 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 18 | 18 | B.1.36 | 0.002626 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 15 | 15 | B.1.526 | 0.000353 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 14 | 14 | P.1 | 0.000221 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 11 | 11 | AY.29 | 0.000174 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 11 | 11 | Q.8 | 0.001814 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 9 | 9 | AY.102 | 0.000239 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 8 | 8 | B.1.1.28 | 0.00249 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 7 | 7 | AY.38 | 0.003495 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 7 | 7 | P.1.14 | 0.000335 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 6 | 6 | AY.24 | 0.002586 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 6 | 6 | AY.46.5 | 0.00119 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 6 | 6 | B.1.1.33 | 0.002525 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 6 | 6 | B.1.170 | 0.025862 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 6 | 6 | B.1.258.4 | 0.02069 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 5 | 5 | B.1.628 | 0.001762 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 3 | 3 | A.28 | 0.007937 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 3 | 3 | B.1.177.21 | 0.000229 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | B.1.1.266 | 0.02439 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | B.1.1.464 | 0.002946 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | B.1.39 | 0.007812 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | B.1.397 | 0.009709 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | B.1.453 | 0.006472 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | 0.055556 | |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.1.144 | 0.028571 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp14A2-B | 491 | Y491Y | taC | taT | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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