CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 103 | T103T | T6028T | syn | acC | acT | 15089 | 14973 | 0.992312 | 18346-18348 |
ORF1ab/nsp14A2-B | 103 | T103T | T6028T | syn | acC | acA | 15089 | 106 | 0.00702499 | 18346-18348 |
ORF1ab/nsp14A2-B | 103 | T103T | T6028T | syn | acC | acG | 15089 | 10 | 0.000662734 | 18346-18348 |
Details of the mutation T103T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 14973 | 15089 | All | 0.002864 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 106 | 15089 | All | 0.00002 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acG | 10 | 15089 | All | 0.000002 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3418 | 3418 | AY.53 | 0.982749 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2831 | 2831 | B.1.1.434 | 0.986755 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1837 | 1842 | AY.4 | 0.002859 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 4 | 1842 | AY.4 | 0.000006 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acG | 1 | 1842 | AY.4 | 0.000002 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1103 | 1120 | B.1.1.7 | 0.000987 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 16 | 1120 | B.1.1.7 | 0.000014 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acG | 1 | 1120 | B.1.1.7 | 0.000001 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 695 | 701 | AY.43 | 0.003079 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 6 | 701 | AY.43 | 0.000027 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 645 | 658 | B.1.617.2 | 0.002429 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 12 | 658 | B.1.617.2 | 0.000045 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acG | 1 | 658 | B.1.617.2 | 0.000004 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 451 | 451 | AY.3 | 0.004486 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 447 | 449 | AY.103 | 0.002775 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 2 | 449 | AY.103 | 0.000012 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 441 | 444 | B.1.2 | 0.003883 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 3 | 444 | B.1.2 | 0.000026 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 301 | 301 | AY.98.1 | 0.014578 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 188 | 188 | AY.24 | 0.081034 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 148 | 151 | AY.25 | 0.00089 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 3 | 151 | AY.25 | 0.000018 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 150 | 150 | AY.9.2 | 0.005509 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 123 | 130 | B.1 | 0.001127 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 7 | 130 | B.1 | 0.000064 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 106 | 106 | AY.100 | 0.004877 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 96 | 98 | AY.44 | 0.000584 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 2 | 98 | AY.44 | 0.000012 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 78 | 78 | P.1 | 0.001229 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 75 | 75 | B.1.525 | 0.008487 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 69 | 69 | AY.26 | 0.001953 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 68 | 68 | AE.8 | 0.033252 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 67 | 67 | Q.1 | 0.008464 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 60 | 61 | B.1.177 | 0.00079 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 1 | 61 | B.1.177 | 0.000013 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 53 | 53 | B.1.1.33 | 0.022306 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 52 | 52 | AY.121 | 0.007037 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 48 | 48 | AY.4.3 | 0.040404 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 44 | 44 | AY.99.2 | 0.004055 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 41 | 41 | B.1.351 | 0.001219 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 37 | 38 | B.1.1 | 0.000671 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 1 | 38 | B.1.1 | 0.000018 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 36 | 36 | AY.75 | 0.002017 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 35 | 35 | B.1.637 | 0.002558 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 33 | 34 | AY.20 | 0.001283 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 1 | 34 | AY.20 | 0.000039 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 33 | 34 | B.1.429 | 0.000776 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acG | 1 | 34 | B.1.429 | 0.000024 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 23 | 31 | B.1.1.519 | 0.000913 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 8 | 31 | B.1.1.519 | 0.000318 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 30 | 30 | N.10 | 0.882353 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 25 | 26 | AY.29 | 0.000394 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 1 | 26 | AY.29 | 0.000016 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 18 | 26 | AY.3.1 | 0.001535 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 8 | 26 | AY.3.1 | 0.000682 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 21 | 26 | AY.39 | 0.000519 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acG | 4 | 26 | AY.39 | 0.000099 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 1 | 26 | AY.39 | 0.000025 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 26 | 26 | B.1.234 | 0.003431 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 25 | 25 | AY.119 | 0.000883 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 25 | 25 | B.1.1.28 | 0.007781 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 23 | 23 | AY.57 | 0.015092 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 21 | 21 | B.1.243 | 0.001461 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 19 | 20 | AY.4.2 | 0.000412 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 1 | 20 | AY.4.2 | 0.000022 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 20 | 20 | AY.7.2 | 0.011186 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 20 | 20 | B.1.561 | 0.00794 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 19 | 19 | B.1.36.27 | 0.014504 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 18 | 18 | AY.42 | 0.000724 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 18 | 18 | B.1.258 | 0.001198 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 17 | 18 | B.1.526 | 0.0004 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 1 | 18 | B.1.526 | 0.000024 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 17 | 17 | AY.113 | 0.002421 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 16 | 16 | B.1.1.141 | 0.032193 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 16 | 16 | B.1.361 | 0.020619 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 16 | 16 | B.1.426 | 0.016145 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 15 | 15 | AY.117 | 0.001268 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 7 | 15 | AY.98 | 0.000553 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 7 | 15 | AY.98 | 0.000553 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acG | 1 | 15 | AY.98 | 0.000079 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 15 | 15 | B.1.160 | 0.000468 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 15 | 15 | B.1.177.60 | 0.003277 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 14 | 14 | AY.111 | 0.002564 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 13 | 14 | AY.5 | 0.000268 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acG | 1 | 14 | AY.5 | 0.000021 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 13 | 13 | AY.46.4 | 0.002139 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 13 | 13 | B.1.1.317 | 0.005352 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 10 | 12 | B.1.1.214 | 0.000555 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 2 | 12 | B.1.1.214 | 0.000111 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 12 | 12 | P.1.12 | 0.005808 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 12 | 12 | P.1.14 | 0.000574 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 10 | 11 | AY.47 | 0.000311 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 1 | 11 | AY.47 | 0.000031 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 11 | 11 | B.1.1.63 | 0.004244 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 10 | 10 | AY.54 | 0.000953 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 10 | 10 | B.1.240 | 0.002156 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 10 | 10 | C.37 | 0.001161 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 9 | 9 | A.2.5.2 | 0.014151 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 9 | 9 | AY.27 | 0.000582 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 9 | 9 | B.1.177.73 | 0.005096 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 9 | 9 | B.1.369 | 0.002567 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 8 | 8 | AY.34 | 0.000776 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 8 | 8 | B.1.311 | 0.002197 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 7 | 7 | AY.5.3 | 0.002362 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 7 | 7 | AY.6 | 0.000288 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 7 | 7 | B.1.177.21 | 0.000535 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 7 | 7 | B.1.177.33 | 0.011513 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 7 | 7 | B.1.221 | 0.000497 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 7 | 7 | B.1.588 | 0.006369 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 6 | 7 | P.2 | 0.00112 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 1 | 7 | P.2 | 0.000187 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 6 | 6 | AY.101 | 0.002943 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 4 | 6 | AY.102 | 0.000106 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 2 | 6 | AY.102 | 0.000053 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 3 | 6 | AY.109 | 0.002219 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 6 | AY.109 | 0.002219 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 6 | 6 | AY.33 | 0.000401 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 6 | 6 | AY.75.1 | 0.001082 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 6 | 6 | B.1.279 | 0.003082 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 6 | 6 | B.1.595 | 0.001566 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 6 | 6 | B.1.617.1 | 0.000774 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 6 | 6 | P.1.15 | 0.001394 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 5 | 5 | AY.10 | 0.00265 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 5 | 5 | AY.16 | 0.001898 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 5 | 5 | AY.7.1 | 0.000564 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 5 | 5 | B.1.324 | 0.008026 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 4 | 5 | B.1.36.29 | 0.002069 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 5 | B.1.36.29 | 0.000517 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 5 | 5 | B.1.575 | 0.001517 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 4 | 4 | AU.2 | 0.009685 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 4 | 4 | AY.105 | 0.002572 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 4 | 4 | AY.13 | 0.000644 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 4 | 4 | AY.77 | 0.00451 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 4 | 4 | B.1.1.216 | 0.003562 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 4 | 4 | B.1.177.35 | 0.002764 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 4 | 4 | B.1.194 | 0.16 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 4 | 4 | B.1.258.14 | 0.003922 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 4 | B.1.466.2 | 0.001174 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 1 | 4 | B.1.466.2 | 0.000391 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 4 | 4 | B.1.480 | 0.00995 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 4 | 4 | B.1.587 | 0.00759 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 4 | 4 | B.1.626 | 0.022857 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 4 | 4 | P.1.5 | 0.307692 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | A.2.5.3 | 0.030928 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | A.5 | 0.005769 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | AY.41 | 0.000882 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | AY.46.5 | 0.000595 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | AY.58 | 0.002722 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | AY.65 | 0.001599 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 3 | B | 0.000256 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 1 | 3 | B | 0.000128 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | B.1.1.282 | 0.034884 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | B.1.1.432 | 0.003797 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | B.1.177.8 | 0.002257 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | B.1.351.2 | 0.000908 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | B.1.422 | 0.002437 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | B.1.428 | 0.003061 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | B.1.439 | 0.017751 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 3 | B.1.623 | 0.001073 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 1 | 3 | B.1.623 | 0.000536 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | B.39 | 0.006993 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | P.1.2 | 0.003468 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 2 | 2 | A.21 | 0.00554 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | AY.80 | 0.002257 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | B.1.1.157 | 0.001826 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | B.1.1.265 | 0.006309 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | B.1.1.304 | 0.005618 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | B.1.177.26 | 0.013986 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | B.1.177.72 | 0.00678 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | B.1.517.1 | 0.010526 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | B.1.527 | 0.007407 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | B.1.575.1 | 0.004878 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | B.1.597 | 0.009259 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | B.1.617.3 | 0.00597 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | A.19 | 0.009434 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AE.5 | 0.018519 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.160 | 0.02381 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.165 | 0.015385 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.234 | 0.012048 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.40 | 0.034483 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.5 | 0.008333 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.254 | 0.025 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.258.12 | 0.007874 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acA | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.451 | 0.008197 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.520 | 0.021739 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.578 | 0.017857 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | C.30.1 | 0.006711 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp14A2-B | 103 | T103T | acC | acT | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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