CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 374 | S374F | S6299F | nonsyn | tCt | tTt | 28202 | 28202 | 1 | 19159-19161 |
Details of the mutation S374F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 28202 | 28202 | All | 0.005394 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 11225 | 11225 | AY.14 | 0.987942 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 9975 | 9975 | AY.54 | 0.951087 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3180 | 3180 | AY.116.1 | 0.990346 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1506 | 1506 | B.1.617.2 | 0.005671 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 449 | 449 | AY.15 | 0.997778 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 182 | 182 | AY.116 | 0.052194 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 142 | 142 | B.1.526 | 0.003338 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 115 | 115 | AY.13 | 0.018513 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 104 | 104 | AY.3 | 0.001034 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 92 | 92 | B.1.1.7 | 0.000082 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 85 | 85 | AY.19 | 0.096921 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 83 | 83 | AY.44 | 0.000505 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 72 | 72 | AY.38 | 0.035946 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 64 | 64 | B.1 | 0.000586 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 46 | 46 | AY.103 | 0.000286 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 46 | 46 | AY.98 | 0.003634 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 45 | 45 | B.1.2 | 0.000396 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 40 | 40 | AY.64 | 0.02381 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 32 | 32 | B.1.177 | 0.000421 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 25 | 25 | AY.4 | 0.000039 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 24 | 24 | AY.65 | 0.012793 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 23 | 23 | B.1.177.86 | 0.004219 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 23 | 23 | P.1 | 0.000362 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 22 | 22 | AY.43 | 0.000097 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 19 | 19 | AY.75 | 0.001064 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 18 | 18 | AY.39 | 0.000445 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 18 | 18 | AY.75.1 | 0.003246 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 16 | 16 | AY.114 | 0.003698 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 16 | 16 | AY.62 | 0.006972 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 15 | 15 | AY.105 | 0.009646 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 15 | 15 | AY.25 | 0.00009 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 15 | 15 | AY.48 | 0.006977 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 14 | 14 | AY.51 | 0.012727 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 13 | 13 | AY.52 | 0.010586 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 13 | 13 | AY.78 | 0.020031 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 12 | 12 | AY.117 | 0.001014 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 12 | 12 | AY.16 | 0.004556 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 12 | 12 | AY.46 | 0.001249 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 11 | 11 | AY.47 | 0.000342 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 10 | 10 | AY.5 | 0.000206 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 10 | 10 | AY.7.1 | 0.001127 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 10 | 10 | B.1.1 | 0.000181 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 9 | 9 | AY.16.1 | 0.004229 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 9 | 9 | B.1.351 | 0.000268 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 9 | 9 | B.1.575 | 0.002731 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 8 | 8 | AY.61 | 0.000838 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 8 | 8 | AY.92 | 0.002298 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 8 | 8 | B.1.408 | 0.02952 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 7 | 7 | AE.8 | 0.003423 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 7 | 7 | AY.33 | 0.000467 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 7 | 7 | AY.49 | 0.022364 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 7 | 7 | AY.84 | 0.003062 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 7 | 7 | B.1.177.7 | 0.001154 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 7 | 7 | B.1.351.3 | 0.006135 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 6 | 6 | AY.5.4 | 0.00166 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 6 | 6 | AY.59 | 0.003178 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 6 | 6 | AY.68 | 0.001642 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 6 | 6 | AY.77 | 0.006764 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 6 | 6 | B | 0.000767 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 5 | 5 | AY.10 | 0.00265 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 5 | 5 | AY.110 | 0.000563 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 5 | 5 | AY.81 | 0.00996 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 5 | 5 | B.1.1.318 | 0.001509 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 4 | 4 | AY.50 | 0.003197 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 4 | 4 | AY.55 | 0.00367 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | AY.66 | 0.003209 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | AY.86 | 0.00249 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | AY.87 | 0.002498 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | B.1.126 | 0.003827 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | B.1.160.24 | 0.013274 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | 0.111111 | |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.56 | 0.00321 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | B.1.1.117 | 0.019417 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 2 | 2 | B.1.596.1 | 0.018692 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.1.336 | 0.016667 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.1.414 | 0.142857 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.1.67 | 0.004566 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.190 | 0.01 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.205 | 0.02381 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.328 | 0.03125 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp14A2-B | 374 | S374F | tCt | tTt | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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