CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 46 | P46S | P5971S | nonsyn | Cct | Tct | 3126 | 3126 | 1 | 18175-18177 |
Details of the mutation P46S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 3126 | 3126 | All | 0.000598 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1788 | 1788 | B.1.1.7 | 0.001601 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 117 | 117 | AY.4 | 0.000182 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 72 | 72 | AY.3 | 0.000716 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 72 | 72 | P.1.17 | 0.011647 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 70 | 70 | B.1 | 0.000641 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 64 | 64 | P.1 | 0.001008 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 54 | 54 | B.1.617.2 | 0.000203 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 52 | 52 | A.2.5 | 0.025948 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 50 | 50 | AY.25 | 0.000301 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 45 | 45 | C.35 | 0.03483 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 42 | 42 | B.1.2 | 0.00037 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 34 | 34 | B.1.177.21 | 0.0026 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 33 | 33 | B.1.1 | 0.000599 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 32 | 32 | AY.43 | 0.000142 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 25 | 25 | AY.44 | 0.000152 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 25 | 25 | B.1.429 | 0.000588 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 24 | 24 | AY.46.6 | 0.001733 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 21 | 21 | B.1.177 | 0.000277 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 21 | 21 | B.1.526 | 0.000494 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 20 | 20 | AY.5 | 0.000413 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 19 | 19 | AY.103 | 0.000118 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 18 | 18 | B.1.319 | 0.054878 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 17 | 17 | AY.26 | 0.000481 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 17 | 17 | B.1.221 | 0.001208 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 13 | 13 | Q.1 | 0.001642 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 12 | 12 | AY.29 | 0.000189 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 11 | 11 | P.1.14 | 0.000526 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 11 | 11 | P.1.15 | 0.002556 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 10 | 10 | AY.102 | 0.000265 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 10 | 10 | AY.73 | 0.006653 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 10 | 10 | B.1.1.318 | 0.003018 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 9 | 9 | AY.45 | 0.001095 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 9 | 9 | B.1.621 | 0.000797 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 8 | 8 | B.1.111 | 0.009401 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 8 | 8 | B.1.177.81 | 0.001515 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 8 | 8 | B.1.351 | 0.000238 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 8 | 8 | B.1.361 | 0.010309 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 7 | 7 | AY.33 | 0.000467 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 7 | 7 | AY.61 | 0.000733 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 7 | 7 | AY.98 | 0.000553 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 7 | 7 | B.1.1.214 | 0.000388 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 5 | 5 | AY.110 | 0.000563 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 5 | 5 | AY.116.1 | 0.001557 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 5 | 5 | C.36 | 0.004554 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 4 | 4 | B.1.1.448 | 0.00813 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 4 | 4 | B.1.177.58 | 0.005326 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 4 | 4 | B.1.362 | 0.006163 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 4 | 4 | B.1.577 | 0.002749 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 4 | 4 | Q.3 | 0.00058 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 3 | 3 | B.1.398 | 0.008929 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 3 | 3 | P.1.4 | 0.00293 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | B | 0.000256 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | B.1.128 | 0.001271 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | B.1.131 | 0.017544 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | B.1.177.6 | 0.001953 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | B.1.422 | 0.001625 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | B.1.505 | 0.008772 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.177.3 | 0.007634 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.321 | 0.034483 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.360 | 0.012658 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | B.58 | 0.010204 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp14A2-B | 46 | P46S | Cct | Tct | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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