CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : Mut = P43A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B43P43AP5968AnonsynCctGct30260.86666718166-18168
ORF1ab/nsp14A2-B43P43AP5968AnonsynCcTGcA3020.066666718166-18168
ORF1ab/nsp14A2-B43P43AP5968AnonsynCcTGcG3020.066666718166-18168

Details of the mutation P43A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B43P43ACctGct2630All0.000005
ORF1ab/nsp14A2-B43P43ACcTGcG230All0
ORF1ab/nsp14A2-B43P43ACcTGcA230All0
ORF1ab/nsp14A2-B43P43ACctGct1010AY.440.000061
ORF1ab/nsp14A2-B43P43ACcTGcA260.111111
ORF1ab/nsp14A2-B43P43ACctGct260.111111
ORF1ab/nsp14A2-B43P43ACcTGcG260.111111
ORF1ab/nsp14A2-B43P43ACctGct44AY.200.000155
ORF1ab/nsp14A2-B43P43ACctGct33B.1.1.70.000003
ORF1ab/nsp14A2-B43P43ACctGct22B.10.000018
ORF1ab/nsp14A2-B43P43ACctGct11AY.40.000002
ORF1ab/nsp14A2-B43P43ACctGct11AY.430.000004
ORF1ab/nsp14A2-B43P43ACctGct11B.1.20.000009
ORF1ab/nsp14A2-B43P43ACctGct11B.1.617.10.000129
ORF1ab/nsp14A2-B43P43ACctGct11Q.10.000126