CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 412 | P412S | P6337S | nonsyn | Cct | Tct | 4566 | 4566 | 1 | 19273-19275 |
Details of the mutation P412S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 4566 | 4566 | All | 0.000873 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1342 | 1342 | AY.4 | 0.002089 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1277 | 1277 | B.1.160 | 0.039827 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 562 | 562 | B.1.1.7 | 0.000503 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 206 | 206 | B.1.177.15 | 0.129968 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 151 | 151 | B.1.617.2 | 0.000569 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 149 | 149 | AY.44 | 0.000907 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 61 | 61 | B.1.2 | 0.000537 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 58 | 58 | AY.3 | 0.000577 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 54 | 54 | AY.25 | 0.000325 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 53 | 53 | B.1.243 | 0.003688 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 39 | 39 | AY.113 | 0.005553 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 32 | 32 | B.1.517 | 0.013664 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 31 | 31 | AY.74 | 0.003585 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 28 | 28 | P.1 | 0.000441 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 25 | 25 | B.1 | 0.000229 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 19 | 19 | B.1.177.21 | 0.001453 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 18 | 18 | AY.43 | 0.00008 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 18 | 18 | AY.82 | 0.024423 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 18 | 18 | B.1.1 | 0.000327 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 18 | 18 | B.1.621 | 0.001593 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 17 | 17 | B.1.111 | 0.019976 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 17 | 17 | B.1.177 | 0.000224 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 17 | 17 | B.1.351 | 0.000505 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 15 | 15 | AY.4.2 | 0.000325 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 11 | 11 | AY.121 | 0.001488 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 11 | 11 | AY.54 | 0.001049 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 10 | 10 | A.21 | 0.027701 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 10 | 10 | B.44 | 1 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 9 | 9 | B.1.369 | 0.002567 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 8 | 8 | AY.4.5 | 0.00086 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 8 | 8 | AY.47 | 0.000249 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 8 | 8 | B.1.391 | 0.009019 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 8 | 8 | N.5 | 0.014134 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 7 | 7 | AY.114 | 0.001618 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 7 | 7 | B.1.1.519 | 0.000278 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 7 | 7 | B.1.177.49 | 0.259259 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 6 | 6 | B.1.1.347 | 0.109091 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 5 | 5 | AY.105 | 0.003215 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 5 | 5 | B.1.389 | 0.00501 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 4 | 4 | B.1.575 | 0.001214 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 3 | 3 | AY.108 | 0.003308 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 3 | 3 | B.1.325 | 0.02069 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | B.1.1.192 | 0.004619 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | B.1.189 | 0.008584 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | B.1.433 | 0.00639 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | AE.4 | 0.043478 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B | 0.000128 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.1.226 | 0.005814 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.1.227 | 0.004348 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.1.428 | 0.009434 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.160.20 | 0.008929 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.177.47 | 0.012987 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.293 | 0.0125 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.534 | 0.0125 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | B.53 | 0.011765 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp14A2-B | 412 | P412S | Cct | Tct | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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