CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : Mut = P203S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B203P203SP6128SnonsynCctTct252925280.99960518646-18648
ORF1ab/nsp14A2-B203P203SP6128SnonsynCcTTcC252910.00039541318646-18648

Details of the mutation P203S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B203P203SCctTct25282529All0.000484
ORF1ab/nsp14A2-B203P203SCcTTcC12529All0
ORF1ab/nsp14A2-B203P203SCctTct371371B.1.1.70.000332
ORF1ab/nsp14A2-B203P203SCctTct363363AY.40.000565
ORF1ab/nsp14A2-B203P203SCctTct155155AY.740.017925
ORF1ab/nsp14A2-B203P203SCctTct130130AY.510.118182
ORF1ab/nsp14A2-B203P203SCctTct127127B.1.617.20.000478
ORF1ab/nsp14A2-B203P203SCctTct125125AY.1030.000776
ORF1ab/nsp14A2-B203P203SCctTct107107B.1.466.20.041862
ORF1ab/nsp14A2-B203P203SCctTct9191B.1.258.170.009461
ORF1ab/nsp14A2-B203P203SCctTct8282Q.30.011893
ORF1ab/nsp14A2-B203P203SCctTct7777B.1.2580.005124
ORF1ab/nsp14A2-B203P203SCctTct6262B.1.1770.000816
ORF1ab/nsp14A2-B203P203SCctTct4242AY.1110.007692
ORF1ab/nsp14A2-B203P203SCctTct3636B.10.00033
ORF1ab/nsp14A2-B203P203SCctTct3333AY.250.000198
ORF1ab/nsp14A2-B203P203SCctTct3031AY.440.000183
ORF1ab/nsp14A2-B203P203SCcTTcC131AY.440.000006
ORF1ab/nsp14A2-B203P203SCctTct2828AY.430.000124
ORF1ab/nsp14A2-B203P203SCctTct2727AY.200.001049
ORF1ab/nsp14A2-B203P203SCctTct2626B.1.5250.002942
ORF1ab/nsp14A2-B203P203SCctTct2525AY.1000.00115
ORF1ab/nsp14A2-B203P203SCctTct2525AY.30.000249
ORF1ab/nsp14A2-B203P203SCctTct2424AY.7.10.002705
ORF1ab/nsp14A2-B203P203SCctTct2323AY.3.10.001961
ORF1ab/nsp14A2-B203P203SCctTct2222AY.390.000544
ORF1ab/nsp14A2-B203P203SCctTct2121AY.610.0022
ORF1ab/nsp14A2-B203P203SCctTct1919AY.470.000591
ORF1ab/nsp14A2-B203P203SCctTct1818AY.300.007123
ORF1ab/nsp14A2-B203P203SCctTct1818P.10.000284
ORF1ab/nsp14A2-B203P203SCctTct1616AY.50.00033
ORF1ab/nsp14A2-B203P203SCctTct1616B.1.20.000141
ORF1ab/nsp14A2-B203P203SCctTct1616B.1.2210.001137
ORF1ab/nsp14A2-B203P203SCctTct1414B.1.5750.004248
ORF1ab/nsp14A2-B203P203SCctTct1313AY.4.20.000282
ORF1ab/nsp14A2-B203P203SCctTct1313AY.5.40.003597
ORF1ab/nsp14A2-B203P203SCctTct1212AY.75.10.002164
ORF1ab/nsp14A2-B203P203SCctTct1111B.1.2430.000765
ORF1ab/nsp14A2-B203P203SCctTct1010AY.1020.000265
ORF1ab/nsp14A2-B203P203SCctTct99B.1.177.410.0225
ORF1ab/nsp14A2-B203P203SCctTct99B.1.6370.000658
ORF1ab/nsp14A2-B203P203SCctTct99P.1.150.002091
ORF1ab/nsp14A2-B203P203SCctTct77AY.420.000282
ORF1ab/nsp14A2-B203P203SCctTct77AY.540.000667
ORF1ab/nsp14A2-B203P203SCctTct77AY.60.000288
ORF1ab/nsp14A2-B203P203SCctTct77B.1.10.000127
ORF1ab/nsp14A2-B203P203SCctTct77B.1.1.5190.000278
ORF1ab/nsp14A2-B203P203SCctTct77B.1.1600.000218
ORF1ab/nsp14A2-B203P203SCctTct66AY.340.000582
ORF1ab/nsp14A2-B203P203SCctTct66B.1.1.2140.000333
ORF1ab/nsp14A2-B203P203SCctTct66B.1.5260.000141
ORF1ab/nsp14A2-B203P203SCctTct55AY.1170.000423
ORF1ab/nsp14A2-B203P203SCctTct55AY.46.60.000361
ORF1ab/nsp14A2-B203P203SCctTct44AY.330.000267
ORF1ab/nsp14A2-B203P203SCctTct44AY.370.001264
ORF1ab/nsp14A2-B203P203SCctTct44B.1.1620.020101
ORF1ab/nsp14A2-B203P203SCctTct44C.370.000464
ORF1ab/nsp14A2-B203P203SCctTct33A.2.50.001497
ORF1ab/nsp14A2-B203P203SCctTct33AM.40.010714
ORF1ab/nsp14A2-B203P203SCctTct33AY.1180.000188
ORF1ab/nsp14A2-B203P203SCctTct33AY.16.10.00141
ORF1ab/nsp14A2-B203P203SCctTct33AY.230.000209
ORF1ab/nsp14A2-B203P203SCctTct33AY.39.20.004622
ORF1ab/nsp14A2-B203P203SCctTct33AY.400.002893
ORF1ab/nsp14A2-B203P203SCctTct33AY.450.000365
ORF1ab/nsp14A2-B203P203SCctTct33AY.800.003386
ORF1ab/nsp14A2-B203P203SCctTct33B.1.1.5260.010638
ORF1ab/nsp14A2-B203P203SCctTct33B.1.110.30.002155
ORF1ab/nsp14A2-B203P203SCctTct33B.1.177.870.002183
ORF1ab/nsp14A2-B203P203SCctTct33B.1.221.40.0125
ORF1ab/nsp14A2-B203P203SCctTct33B.1.360.000438
ORF1ab/nsp14A2-B203P203SCctTct33B.1.36.290.001552
ORF1ab/nsp14A2-B203P203SCctTct33B.1.617.10.000387
ORF1ab/nsp14A2-B203P203SCctTct33P.1.170.000485
ORF1ab/nsp14A2-B203P203SCctTct22A.10.000564
ORF1ab/nsp14A2-B203P203SCctTct22A.2.5.10.009615
ORF1ab/nsp14A2-B203P203SCctTct22AY.1060.00067
ORF1ab/nsp14A2-B203P203SCctTct22AY.1100.000225
ORF1ab/nsp14A2-B203P203SCctTct22AY.1200.000074
ORF1ab/nsp14A2-B203P203SCctTct22AY.120.10.000642
ORF1ab/nsp14A2-B203P203SCctTct22AY.160.000759
ORF1ab/nsp14A2-B203P203SCctTct22AY.290.000032
ORF1ab/nsp14A2-B203P203SCctTct22AY.34.10.00102
ORF1ab/nsp14A2-B203P203SCctTct22AY.350.000466
ORF1ab/nsp14A2-B203P203SCctTct22AY.4.40.000818
ORF1ab/nsp14A2-B203P203SCctTct22AY.710.00095
ORF1ab/nsp14A2-B203P203SCctTct22B.1.1.480.005747
ORF1ab/nsp14A2-B203P203SCctTct22B.1.160.210.040816
ORF1ab/nsp14A2-B203P203SCctTct22B.1.177.150.001262
ORF1ab/nsp14A2-B203P203SCctTct22B.1.2340.000264
ORF1ab/nsp14A2-B203P203SCctTct22B.1.3110.000549
ORF1ab/nsp14A2-B203P203SCctTct22B.1.3510.000059
ORF1ab/nsp14A2-B203P203SCctTct22B.1.390.007812
ORF1ab/nsp14A2-B203P203SCctTct22B.1.4290.000047
ORF1ab/nsp14A2-B203P203SCctTct22B.1.4590.008163
ORF1ab/nsp14A2-B203P203SCctTct22B.1.5610.000794
ORF1ab/nsp14A2-B203P203SCctTct22B.1.6030.021277
ORF1ab/nsp14A2-B203P203SCctTct22B.1.6090.000959
ORF1ab/nsp14A2-B203P203SCctTct22B.400.000729
ORF1ab/nsp14A2-B203P203SCctTct22P.1.120.000968
ORF1ab/nsp14A2-B203P203SCctTct110.055556
ORF1ab/nsp14A2-B203P203SCctTct11A.2.5.20.001572
ORF1ab/nsp14A2-B203P203SCctTct11A.270.001656
ORF1ab/nsp14A2-B203P203SCctTct11AU.20.002421
ORF1ab/nsp14A2-B203P203SCctTct11AY.100.00053
ORF1ab/nsp14A2-B203P203SCctTct11AY.1070.000466
ORF1ab/nsp14A2-B203P203SCctTct11AY.1080.001103
ORF1ab/nsp14A2-B203P203SCctTct11AY.1130.000142
ORF1ab/nsp14A2-B203P203SCctTct11AY.1190.000035
ORF1ab/nsp14A2-B203P203SCctTct11AY.130.000161
ORF1ab/nsp14A2-B203P203SCctTct11AY.140.000088
ORF1ab/nsp14A2-B203P203SCctTct11AY.23.10.000417
ORF1ab/nsp14A2-B203P203SCctTct11AY.320.000532
ORF1ab/nsp14A2-B203P203SCctTct11AY.360.000148
ORF1ab/nsp14A2-B203P203SCctTct11AY.380.000499
ORF1ab/nsp14A2-B203P203SCctTct11AY.4.10.000737
ORF1ab/nsp14A2-B203P203SCctTct11AY.410.000294
ORF1ab/nsp14A2-B203P203SCctTct11AY.46.30.000934
ORF1ab/nsp14A2-B203P203SCctTct11AY.46.50.000198
ORF1ab/nsp14A2-B203P203SCctTct11AY.5.30.000337
ORF1ab/nsp14A2-B203P203SCctTct11AY.550.000917
ORF1ab/nsp14A2-B203P203SCctTct11AY.590.00053
ORF1ab/nsp14A2-B203P203SCctTct11AY.680.000274
ORF1ab/nsp14A2-B203P203SCctTct11AY.690.000187
ORF1ab/nsp14A2-B203P203SCctTct11AY.70.000196
ORF1ab/nsp14A2-B203P203SCctTct11AY.750.000056
ORF1ab/nsp14A2-B203P203SCctTct11AY.850.000427
ORF1ab/nsp14A2-B203P203SCctTct11AY.9.20.000037
ORF1ab/nsp14A2-B203P203SCctTct11AY.910.00073
ORF1ab/nsp14A2-B203P203SCctTct11AY.980.000079
ORF1ab/nsp14A2-B203P203SCctTct11AY.98.10.000048
ORF1ab/nsp14A2-B203P203SCctTct11AY.99.20.000092
ORF1ab/nsp14A2-B203P203SCctTct11B0.000128
ORF1ab/nsp14A2-B203P203SCctTct11B.1.1.1290.009174
ORF1ab/nsp14A2-B203P203SCctTct11B.1.1.1410.002012
ORF1ab/nsp14A2-B203P203SCctTct11B.1.1.1490.016393
ORF1ab/nsp14A2-B203P203SCctTct11B.1.1.150.013514
ORF1ab/nsp14A2-B203P203SCctTct11B.1.1.1810.004545
ORF1ab/nsp14A2-B203P203SCctTct11B.1.1.1980.001468
ORF1ab/nsp14A2-B203P203SCctTct11B.1.1.2160.00089
ORF1ab/nsp14A2-B203P203SCctTct11B.1.1.2770.000759
ORF1ab/nsp14A2-B203P203SCctTct11B.1.1.280.000311
ORF1ab/nsp14A2-B203P203SCctTct11B.1.1.2840.000107
ORF1ab/nsp14A2-B203P203SCctTct11B.1.1.2940.001266
ORF1ab/nsp14A2-B203P203SCctTct11B.1.1.2970.002237
ORF1ab/nsp14A2-B203P203SCctTct11B.1.1.3170.000412
ORF1ab/nsp14A2-B203P203SCctTct11B.1.1.3330.001076
ORF1ab/nsp14A2-B203P203SCctTct11B.1.1.3710.010417
ORF1ab/nsp14A2-B203P203SCctTct11B.1.1.3720.000689
ORF1ab/nsp14A2-B203P203SCctTct11B.1.1.3850.004464
ORF1ab/nsp14A2-B203P203SCctTct11B.1.1.4340.000349
ORF1ab/nsp14A2-B203P203SCctTct11B.1.1.5070.008696
ORF1ab/nsp14A2-B203P203SCctTct11B.1.1.5240.020833
ORF1ab/nsp14A2-B203P203SCctTct11B.1.1.630.000386
ORF1ab/nsp14A2-B203P203SCctTct11B.1.160.120.00641
ORF1ab/nsp14A2-B203P203SCctTct11B.1.160.260.002421
ORF1ab/nsp14A2-B203P203SCctTct11B.1.177.320.00135
ORF1ab/nsp14A2-B203P203SCctTct11B.1.177.40.000211
ORF1ab/nsp14A2-B203P203SCctTct11B.1.177.570.000281
ORF1ab/nsp14A2-B203P203SCctTct11B.1.177.600.000218
ORF1ab/nsp14A2-B203P203SCctTct11B.1.177.730.000566
ORF1ab/nsp14A2-B203P203SCctTct11B.1.1920.009259
ORF1ab/nsp14A2-B203P203SCctTct11B.1.2650.001271
ORF1ab/nsp14A2-B203P203SCctTct11B.1.3040.023256
ORF1ab/nsp14A2-B203P203SCctTct11B.1.3620.001541
ORF1ab/nsp14A2-B203P203SCctTct11B.1.3690.000285
ORF1ab/nsp14A2-B203P203SCctTct11B.1.4270.00005
ORF1ab/nsp14A2-B203P203SCctTct11B.1.438.10.000107
ORF1ab/nsp14A2-B203P203SCctTct11B.1.5170.000427
ORF1ab/nsp14A2-B203P203SCctTct11B.1.5330.009615
ORF1ab/nsp14A2-B203P203SCctTct11B.1.575.10.002439
ORF1ab/nsp14A2-B203P203SCctTct11B.1.5990.00365
ORF1ab/nsp14A2-B203P203SCctTct11B.1.6000.005848
ORF1ab/nsp14A2-B203P203SCctTct11B.1.6190.000871
ORF1ab/nsp14A2-B203P203SCctTct11B.1.6220.012987
ORF1ab/nsp14A2-B203P203SCctTct11B.550.00295
ORF1ab/nsp14A2-B203P203SCctTct11C.160.00106
ORF1ab/nsp14A2-B203P203SCctTct11D.20.000075
ORF1ab/nsp14A2-B203P203SCctTct11P.1.100.000269
ORF1ab/nsp14A2-B203P203SCctTct11P.1.140.000048
ORF1ab/nsp14A2-B203P203SCctTct11P.1.40.000977
ORF1ab/nsp14A2-B203P203SCctTct11P.20.000187
ORF1ab/nsp14A2-B203P203SCctTct11Q.40.000455
ORF1ab/nsp14A2-B203P203SCctTct11W.30.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.