CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 7 | L7L | L5932L | syn | ctC | ctT | 11747 | 11304 | 0.962288 | 18058-18060 |
ORF1ab/nsp14A2-B | 7 | L7L | L5932L | syn | ctC | ctA | 11747 | 354 | 0.0301354 | 18058-18060 |
ORF1ab/nsp14A2-B | 7 | L7L | L5932L | syn | CtC | TtA | 11747 | 48 | 0.00408615 | 18058-18060 |
ORF1ab/nsp14A2-B | 7 | L7L | L5932L | syn | ctC | ctG | 11747 | 40 | 0.00340512 | 18058-18060 |
ORF1ab/nsp14A2-B | 7 | L7L | L5932L | syn | CtC | TtG | 11747 | 1 | 0.0000851281 | 18058-18060 |
Details of the mutation L7L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 11304 | 11747 | All | 0.002162 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 354 | 11747 | All | 0.000068 |
ORF1ab/nsp14A2-B | 7 | L7L | CtC | TtA | 48 | 11747 | All | 0.000009 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctG | 40 | 11747 | All | 0.000008 |
ORF1ab/nsp14A2-B | 7 | L7L | CtC | TtG | 1 | 11747 | All | 0 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3505 | 3505 | A.1 | 0.98788 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1532 | 1534 | AY.3 | 0.015238 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 2 | 1534 | AY.3 | 0.00002 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1079 | 1206 | B.1.1.7 | 0.000966 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 65 | 1206 | B.1.1.7 | 0.000058 |
ORF1ab/nsp14A2-B | 7 | L7L | CtC | TtA | 45 | 1206 | B.1.1.7 | 0.00004 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctG | 17 | 1206 | B.1.1.7 | 0.000015 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 809 | 809 | B.1.177.86 | 0.148413 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 509 | 513 | AY.4 | 0.000792 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 3 | 513 | AY.4 | 0.000005 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctG | 1 | 513 | AY.4 | 0.000002 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 378 | 381 | B.1.2 | 0.003328 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 2 | 381 | B.1.2 | 0.000018 |
ORF1ab/nsp14A2-B | 7 | L7L | CtC | TtA | 1 | 381 | B.1.2 | 0.000009 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 251 | 262 | AY.44 | 0.001528 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctG | 10 | 262 | AY.44 | 0.000061 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 1 | 262 | AY.44 | 0.000006 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 250 | 250 | AY.5 | 0.005162 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 194 | 194 | B.1.351.2 | 0.058699 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 185 | 189 | B.1.617.2 | 0.000697 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 3 | 189 | B.1.617.2 | 0.000011 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctG | 1 | 189 | B.1.617.2 | 0.000004 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 131 | 140 | B.1 | 0.0012 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 9 | 140 | B.1 | 0.000082 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 85 | 131 | AY.26 | 0.002406 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 46 | 131 | AY.26 | 0.001302 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 131 | 131 | B.1.556 | 0.984962 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 127 | 127 | AY.43 | 0.000563 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 119 | 119 | AY.25 | 0.000716 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 109 | 113 | AY.103 | 0.000677 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 4 | 113 | AY.103 | 0.000025 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 95 | 95 | B.1.1 | 0.001723 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 93 | 93 | AY.92 | 0.026716 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 80 | 80 | B.1.177.48 | 0.25 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 75 | 75 | B.1.558 | 0.342466 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 73 | 73 | A | 0.028251 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 69 | 69 | B.1.219 | 0.650943 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 66 | 66 | AY.33 | 0.004407 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 62 | 62 | Q.2 | 0.038037 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 59 | 59 | B.1.575.1 | 0.143902 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 52 | 52 | B.1.351 | 0.001546 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 49 | 49 | C.11 | 0.521277 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 47 | 47 | B.1.160 | 0.001466 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 41 | 47 | P.1 | 0.000646 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 2 | 47 | P.1 | 0.000032 |
ORF1ab/nsp14A2-B | 7 | L7L | CtC | TtA | 2 | 47 | P.1 | 0.000032 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctG | 1 | 47 | P.1 | 0.000016 |
ORF1ab/nsp14A2-B | 7 | L7L | CtC | TtG | 1 | 47 | P.1 | 0.000016 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 42 | 42 | B.1.177 | 0.000553 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 33 | 33 | B | 0.004218 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 32 | 32 | AY.6 | 0.001316 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 32 | 32 | AY.75 | 0.001793 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 32 | 32 | B.1.429 | 0.000753 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 30 | 30 | AY.39.1 | 0.001188 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 24 | 26 | AY.39 | 0.000593 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 1 | 26 | AY.39 | 0.000025 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctG | 1 | 26 | AY.39 | 0.000025 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 26 | 26 | B.1.221 | 0.001847 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 23 | 25 | AY.29 | 0.000363 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 2 | 25 | AY.29 | 0.000032 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 21 | 24 | B.1.526 | 0.000494 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 3 | 24 | B.1.526 | 0.000071 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 20 | 20 | AY.111 | 0.003663 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 17 | 20 | AY.27 | 0.0011 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 20 | AY.27 | 0.000194 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 20 | 20 | AY.69 | 0.003733 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 18 | 19 | AY.102 | 0.000477 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctG | 1 | 19 | AY.102 | 0.000027 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 19 | 19 | B.1.177.20 | 0.028832 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 19 | 19 | B.1.621 | 0.001682 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 18 | 18 | AY.14 | 0.001584 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 17 | 17 | AY.113 | 0.002421 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 17 | 17 | B.1.177.4 | 0.003588 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 17 | 17 | B.1.36.29 | 0.008795 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 16 | 16 | AY.45 | 0.001947 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 16 | 16 | AY.83 | 0.027586 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 15 | 16 | B.1.596 | 0.001307 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 1 | 16 | B.1.596 | 0.000087 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 15 | 15 | B.1.1.28 | 0.004669 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 14 | 14 | AY.100 | 0.000644 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 14 | 14 | B.1.1.189 | 0.02118 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 9 | 13 | B.1.1.265 | 0.028391 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 4 | 13 | B.1.1.265 | 0.012618 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 13 | 13 | B.1.177.56 | 0.008678 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 13 | 13 | B.1.240 | 0.002802 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 12 | 12 | AY.4.2 | 0.00026 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 11 | 12 | AY.61 | 0.001153 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 1 | 12 | AY.61 | 0.000105 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 12 | 12 | B.1.1.214 | 0.000665 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 12 | 12 | B.1.243 | 0.000835 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 12 | 12 | B.1.36.36 | 0.007225 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 11 | 11 | AY.30 | 0.004353 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 11 | 11 | AY.9.2 | 0.000404 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 11 | 11 | B.1.1.169 | 0.2 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 11 | 11 | B.1.258 | 0.000732 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 11 | 11 | B.1.637 | 0.000804 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 10 | 10 | AY.120 | 0.000372 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 10 | 10 | B.1.617.1 | 0.00129 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 10 | 10 | P.1.14 | 0.000478 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 9 | 9 | AY.98 | 0.000711 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 9 | 9 | B.1.3 | 0.02356 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 9 | 9 | B.1.36 | 0.001313 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 9 | 9 | C.36.3 | 0.005105 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 8 | 8 | AY.109 | 0.005917 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 7 | 8 | AY.117 | 0.000592 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 1 | 8 | AY.117 | 0.000085 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 8 | 8 | AY.34 | 0.000776 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 8 | 8 | AY.47 | 0.000249 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 7 | 8 | B.1.1.519 | 0.000278 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 1 | 8 | B.1.1.519 | 0.00004 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 7 | 7 | AY.23 | 0.000488 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 7 | 7 | B.1.241 | 0.005682 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 7 | 7 | B.1.575 | 0.002124 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 7 | 7 | P.1.15 | 0.001626 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 6 | 6 | B.1.1.192 | 0.013857 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 6 | 6 | B.1.36.8 | 0.006 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 6 | 6 | B.1.8 | 0.011834 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 5 | 5 | AY.16.1 | 0.00235 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 5 | 5 | AY.74 | 0.000578 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 5 | 5 | B.1.1.63 | 0.001929 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 5 | 5 | B.1.177.72 | 0.016949 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 5 | 5 | B.1.258.14 | 0.004902 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 5 | B.1.427 | 0.000151 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctG | 2 | 5 | B.1.427 | 0.000101 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 5 | 5 | B.1.588 | 0.00455 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 5 | 5 | C.35 | 0.00387 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 4 | 4 | AY.41 | 0.001176 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 4 | 4 | B.1.1.284 | 0.00043 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 4 | 4 | B.1.177.21 | 0.000306 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 4 | 4 | B.1.406 | 0.024242 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 4 | 4 | B.1.438.1 | 0.000429 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctG | 3 | 4 | B.1.525 | 0.000339 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 4 | B.1.525 | 0.000113 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 4 | B.1.595 | 0.000783 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 1 | 4 | B.1.595 | 0.000261 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | AY.104 | 0.005952 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | AY.71 | 0.001425 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | AY.91 | 0.002191 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | B.1.1.523 | 0.004687 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | B.1.110.3 | 0.002155 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | B.1.177.5 | 0.003727 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 2 | 3 | B.1.177.60 | 0.000437 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 3 | B.1.177.60 | 0.000218 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | B.1.177.63 | 0.008108 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | B.1.214.2 | 0.001799 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | B.1.280 | 0.021429 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | B.1.324 | 0.004815 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | B.1.416.1 | 0.004687 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | C.18 | 0.007772 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | B.1.1.428 | 0.018868 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | B.1.1.464 | 0.002946 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | B.1.1.61 | 0.017544 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | B.1.105 | 0.019231 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | B.1.160.24 | 0.00885 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | B.1.177.24 | 0.002591 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | B.1.177.29 | 0.133333 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | B.1.332 | 0.006993 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | B.1.399 | 0.003868 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 2 | B.1.420 | 0.010417 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 1 | 2 | B.1.420 | 0.010417 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 2 | B.1.466.2 | 0.000391 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctG | 1 | 2 | B.1.466.2 | 0.000391 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 2 | B.1.576 | 0.000907 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 1 | 2 | B.1.576 | 0.000907 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 2 | 2 | U.2 | 0.017544 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AK.1 | 0.012658 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctG | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.1.378 | 0.007299 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.1.43 | 0.014925 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.291 | 0.019231 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctG | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.36.24 | 0.006173 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.36.37 | 0.002778 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.578 | 0.017857 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctA | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.1.632 | 0.006711 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp14A2-B | 7 | L7L | ctC | ctT | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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