CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : Mut = L280L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	280	L280L	L6205L	syn	Cta	Tta	122085	121910	0.998567	18877-18879
ORF1ab/nsp14A2-B	280	L280L	L6205L	syn	ctA	ctG	122085	118	0.00096654	18877-18879
ORF1ab/nsp14A2-B	280	L280L	L6205L	syn	ctA	ctT	122085	50	0.000409551	18877-18879
ORF1ab/nsp14A2-B	280	L280L	L6205L	syn	CtA	TtG	122085	4	0.0000327641	18877-18879
ORF1ab/nsp14A2-B	280	L280L	L6205L	syn	ctA	ctC	122085	3	0.000024573	18877-18879

Details of the mutation L280L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	121910	122085	All	0.023317
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	118	122085	All	0.000023
ORF1ab/nsp14A2-B	280	L280L	ctA	ctT	50	122085	All	0.00001
ORF1ab/nsp14A2-B	280	L280L	CtA	TtG	4	122085	All	0.000001
ORF1ab/nsp14A2-B	280	L280L	ctA	ctC	3	122085	All	0.000001
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	30274	30274	B.1.160	0.944174
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	11076	11076	R.1	0.99694
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	11002	11004	B.1.621	0.973887
ORF1ab/nsp14A2-B	280	L280L	CtA	TtG	2	11004	B.1.621	0.000177
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	9323	9323	B.1.438.1	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	6734	6735	B.1.36	0.982492
ORF1ab/nsp14A2-B	280	L280L	CtA	TtG	1	6735	B.1.36	0.000146
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	5810	5815	B.1	0.053217
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	3	5815	B.1	0.000027
ORF1ab/nsp14A2-B	280	L280L	CtA	TtG	1	5815	B.1	0.000009
ORF1ab/nsp14A2-B	280	L280L	ctA	ctT	1	5815	B.1	0.000009
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2542	2542	B.1.466.2	0.994523
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2359	2359	B.1.36.18	0.991176
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2312	2324	B.1.1.7	0.00207
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	11	2324	B.1.1.7	0.00001
ORF1ab/nsp14A2-B	280	L280L	ctA	ctT	1	2324	B.1.1.7	0.000001
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2015	2015	B.1.36.17	0.995553
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1921	1921	B.1.621.1	0.971674
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1866	1866	B.1.36.29	0.965339
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1659	1659	B.1.36.36	0.998796
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1309	1309	B.1.36.27	0.999237
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1057	1057	B.1.160.16	0.982342
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	996	996	B.1.36.8	0.996
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	972	972	B.1.436	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	854	854	B.1.36.1	0.973774
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	832	832	B.1.111	0.977673
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	818	818	B.1.36.22	0.987923
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	789	789	AU.1	0.998734
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	775	775	B.1.160.8	0.998711
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	702	702	B.1.36.16	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	697	697	B.1.470	0.978933
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	602	602	B.1.36.38	0.988506
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	586	586	B.1.160.17	0.996599
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	569	569	B.1.36.31	0.996497
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	514	523	AY.4	0.0008
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	8	523	AY.4	0.000012
ORF1ab/nsp14A2-B	280	L280L	ctA	ctT	1	523	AY.4	0.000002
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	506	510	B.1.617.2	0.001905
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	4	510	B.1.617.2	0.000015
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	481	481	B.1.160.7	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	470	470	AU.3	0.991561
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	445	464	AY.43	0.001972
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	19	464	AY.43	0.000084
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	463	463	B.1.160.14	0.980932
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	463	463	B.1.36.21	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	444	461	B.1.1	0.008055
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	17	461	B.1.1	0.000308
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	451	451	B.1.36.25	0.995585
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	448	448	B.1.36.39	0.993348
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	411	411	B.1.160.26	0.995157
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	407	407	AU.2	0.985472
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	405	405	B.1.523	0.992647
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	400	400	B.1.625	0.941176
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	381	381	B.1.36.35	0.992188
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	362	362	B.1.471	0.989071
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	360	360	B.1.36.37	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	346	346	B.1.36.26	0.988571
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	339	339	B.1.160.28	0.991228
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	310	310	B.1.36.9	0.996785
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	306	306	B.1.456	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	265	265	B.1.469	0.956679
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	262	262	B.1.465	0.996198
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	249	249	B.1.36.7	0.996
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	243	244	AY.47	0.007559
ORF1ab/nsp14A2-B	280	L280L	ctA	ctT	1	244	AY.47	0.000031
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	241	241	B.1.459	0.983673
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	236	236	B.1.160.29	0.995781
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	226	226	B.1.160.24	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	225	225	B.1.160.33	0.995575
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	207	207	B.1.160.23	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	202	202	B.1.160.30	0.60119
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	201	201	B.1.160.15	0.99505
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	198	200	B.1.2	0.001743
ORF1ab/nsp14A2-B	280	L280L	ctA	ctT	1	200	B.1.2	0.000009
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	1	200	B.1.2	0.000009
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	199	199	B.1.162	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	192	196	AY.39	0.004745
ORF1ab/nsp14A2-B	280	L280L	ctA	ctT	2	196	AY.39	0.000049
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	2	196	AY.39	0.000049
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	191	191	B.1.112	0.989637
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	186	186	B.1.160.32	0.798283
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	182	182	B.1.443	0.850467
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	174	174	B.1.36.28	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	173	173	B.1.468	0.988571
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	172	172	B.1.160.11	0.982857
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	169	169	B.1.439	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	166	166	B.1.9.5	0.943182
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	163	163	B.1.9.4	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	159	162	B.1.177	0.002094
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	3	162	B.1.177	0.00004
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	162	162	B.1.36.24	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	162	162	B.1.9	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	157	157	AY.25	0.000944
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	156	156	B.1.160.12	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	152	152	B.1.438	0.993464
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	147	147	B.1.160.22	0.993243
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	141	142	AY.5	0.002912
ORF1ab/nsp14A2-B	280	L280L	ctA	ctT	1	142	AY.5	0.000021
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	140	140	B.1.260	0.468227
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	137	137	B.1.160.9	0.985612
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	137	137	B.1.466.1	0.985612
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	136	136	B.1.160.18	0.992701
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	134	134	B.1.36.10	0.641148
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	132	132	B.1.36.33	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	127	130	AY.44	0.000773
ORF1ab/nsp14A2-B	280	L280L	ctA	ctT	2	130	AY.44	0.000012
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	1	130	AY.44	0.000006
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	127	127	AY.103	0.000789
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	126	126	B.1.124	0.984375
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	124	124	B.1.463	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	123	123	B.1.160.31	0.991935
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	122	122	AB.1	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	121	121	B.1.160.10	0.975806
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	121	121	B.1.170	0.521552
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	109	109	B.1.462	0.789855
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	106	108	P.1	0.00167
ORF1ab/nsp14A2-B	280	L280L	ctA	ctT	1	108	P.1	0.000016
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	1	108	P.1	0.000016
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	106	106	B.1.1.220	0.197026
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	106	106	B.1.36.19	0.981481
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	104	104	B.1.36.12	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	102	102	B.1.441	0.980769
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	94	94	AY.29	0.001483
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	94	94	B.1.385	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	93	93	B.1.351	0.002765
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	93	93	B.1.36.2	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	90	90	B.1.160.25	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	82	82	B.1.160.20	0.732143
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	79	80	B	0.010097
ORF1ab/nsp14A2-B	280	L280L	ctA	ctT	1	80	B	0.000128
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	80	80	B.1.533	0.769231
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	48	79	B.1.243	0.00334
ORF1ab/nsp14A2-B	280	L280L	ctA	ctT	31	79	B.1.243	0.002157
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	75	75	B.1.1.214	0.004159
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	73	73	B.1.1.526	0.258865
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	73	73	B.1.221	0.005185
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	65	67	AY.3	0.000647
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	1	67	AY.3	0.00001
ORF1ab/nsp14A2-B	280	L280L	ctA	ctT	1	67	AY.3	0.00001
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	67	67	B.1.164	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	66	66	B.1.160.27	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	65	65	B.1.1.274	0.328283
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	63	64	AY.26	0.001784
ORF1ab/nsp14A2-B	280	L280L	ctA	ctT	1	64	AY.26	0.000028
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	61	61	B.1.36.23	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	43	60	B.1.258	0.002862
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	17	60	B.1.258	0.001131
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	58	58	B.1.161	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	58	58	B.1.36.20	0.983051
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	57	57	B.1.526	0.00134
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	55	55	B.1.460	0.982143
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	54	54	B.1.562	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	53	53	AY.102	0.001405
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	52	52	B.1.438.2	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	50	50	B.1.113	0.78125
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	49	49	B.1.160.21	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	49	49	B.1.177.16	0.032558
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	47	47	B.1.177.81	0.008898
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	47	47	B.1.247	0.701493
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	47	47	B.1.36.34	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	47	47	B.1.438.4	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	43	43	B.1.466	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	41	41	B.1.163	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	38	40	AY.4.2	0.000824
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	2	40	AY.4.2	0.000043
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	39	39	B.1.1.39	0.019878
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	35	39	B.1.429	0.000824
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	4	39	B.1.429	0.000094
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	36	36	AY.46	0.003747
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	36	36	B.1.160.13	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	31	34	AY.20	0.001205
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	3	34	AY.20	0.000117
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	34	34	B.1.1.525	0.185792
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	34	34	B.1.234	0.004486
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	33	33	B.1.177.44	0.017125
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	32	32	B.1.245	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	31	31	B.1.473	0.596154
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	31	31	B.1.9.1	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	30	30	AY.42	0.001207
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	28	28	AY.63	0.010832
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	28	28	B.1.160.19	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	28	28	B.1.442	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	27	28	B.1.596	0.002353
ORF1ab/nsp14A2-B	280	L280L	ctA	ctT	1	28	B.1.596	0.000087
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	27	27	AY.23	0.001883
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	25	26	AY.120	0.000929
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	1	26	AY.120	0.000037
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	26	26	B.1.177.73	0.014723
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	26	26	B.1.623	0.013948
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	26	26	B.1.9.3	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	25	25	A	0.009675
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	25	25	B.1.1.445	0.925926
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	25	25	B.1.177.21	0.001912
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	25	25	B.1.467	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	23	23	AY.3.1	0.001961
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	23	23	B.1.258.11	0.009116
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	22	22	B.1.561	0.008734
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	21	22	Q.1	0.002653
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	1	22	Q.1	0.000126
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	20	20	AY.100	0.00092
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	20	20	B.1.369	0.005705
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	20	20	B.1.425	0.05988
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	19	19	AY.9	0.001284
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	18	18	AY.13	0.002898
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	18	18	B.1.1.317	0.00741
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	18	18	B.1.1.519	0.000715
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	17	17	AY.119	0.0006
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	17	17	AY.33	0.001135
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	17	17	AY.4.5	0.001827
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	17	17	AY.61	0.001781
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	17	17	AY.98.1	0.000823
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	17	17	B.1.575	0.005158
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	17	17	B.1.637	0.001242
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	16	16	B.1.1.337	0.057554
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	16	16	B.1.1.432	0.020253
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	16	16	B.1.311	0.004393
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	15	16	B.1.617.1	0.001934
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	1	16	B.1.617.1	0.000129
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	15	15	AY.34	0.001454
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	14	14	AY.116	0.004015
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	14	14	B.1.416	0.017766
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	14	14	B.1.474	0.026616
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	13	13	AY.5.4	0.003597
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	13	13	AY.84	0.005687
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	13	13	B.1.1.10	0.014493
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	13	13	B.1.1.306	0.005699
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	13	13	B.1.177.43	0.019202
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	13	13	B.1.177.55	0.030303
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	13	13	B.1.438.3	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	13	13	P.2	0.002426
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	7	12	AY.111	0.001282
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	5	12	AY.111	0.000916
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	12	12	B.1.1.318	0.003621
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	11	11	AY.39.1	0.000436
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	11	11	AY.7.2	0.006152
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	11	11	AY.75	0.000616
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	11	11	B.1.177.57	0.003091
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	11	11	B.1.214	0.040293
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	11	11	B.1.427	0.000555
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	11	11	B.6	0.010009
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	10	10	AY.46.1	0.010267
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	10	10	AY.75.1	0.001803
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	10	10	B.1.609	0.004794
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	10	10	B.1.9.2	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	10	10	P.1.14	0.000478
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	9	9	AY.114	0.00208
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	9	9	AY.71	0.004276
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	9	9	B.1.1.37	0.001736
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	9	9	B.1.1.464	0.013255
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	9	9	B.1.157	0.026866
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	9	9	B.1.177.7	0.001484
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	9	9	B.1.367	0.007132
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	9	9	B.1.458	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	9	9	C.37	0.001045
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	8		0.166667
ORF1ab/nsp14A2-B	280	L280L	ctA	ctT	3	8		0.166667
ORF1ab/nsp14A2-B	280	L280L	ctA	ctC	2	8		0.111111
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	8	8	B.1.184	0.470588
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	8	8	B.1.397	0.038835
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	8	8	B.1.400	0.003432
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	7	7	AY.37	0.002212
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	7	7	AY.41	0.002058
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	7	7	AY.9.2	0.000257
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	7	7	B.1.1.427	1
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	7	7	B.1.128	0.004447
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	7	7	B.1.240	0.001509
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	7	7	B.1.241	0.005682
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	7	7	B.1.258.17	0.000728
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	7	7	P.1.15	0.001626
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	5	6	AY.117	0.000423
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	1	6	AY.117	0.000085
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	6	6	AY.121	0.000812
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	6	6	AY.45	0.00073
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	6	6	AY.54	0.000572
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	6	6	AY.6	0.000247
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	6	6	B.1.1.70	0.002046
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	6	6	B.1.177.60	0.001311
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	6	6	B.1.177.86	0.001101
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	6	6	B.1.509	0.005195
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	6	6	B.1.575.1	0.014634
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	5	5	AY.106	0.001674
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	5	5	AY.36	0.000741
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	5	5	AY.46.6	0.000361
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	5	5	AY.53	0.001438
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	5	5	AZ.2	0.004105
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	4	5	B.1.1.409	0.011331
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	1	5	B.1.1.409	0.002833
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	5	5	B.1.158	0.119048
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	5	5	B.1.177.31	0.057471
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	5	5	B.1.409	0.003906
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	4	5	C.36.3	0.002269
ORF1ab/nsp14A2-B	280	L280L	ctA	ctC	1	5	C.36.3	0.000567
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	5	5	P.1.12	0.00242
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	4	4	AY.105	0.002572
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	4	4	AY.65	0.002132
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	4	4	AY.95	0.003044
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	4	4	AY.99.2	0.000369
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	4	4	B.1.1.161	0.014134
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	4	4	B.1.1.216	0.003562
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	4	4	B.1.1.222	0.000816
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	4	4	B.1.1.28	0.001245
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	4	4	B.1.1.372	0.002755
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	4	4	B.1.165	0.047619
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	4	4	B.1.177.75	0.004162
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	4	B.1.236	0.00616
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	1	4	B.1.236	0.002053
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	4	4	B.1.396	0.002823
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	4	4	B.1.628	0.001409
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	4	4	B.40	0.001457
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	4	4	C.14	0.017316
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	4	4	C.17	0.222222
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	4	4	C.36	0.003643
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	4	Q.8	0.000495
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	1	4	Q.8	0.000165
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	A.2.5	0.001497
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	AY.113	0.000427
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	AY.27	0.000194
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	AY.4.4	0.001227
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	AY.55	0.002752
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	AY.59	0.001589
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	AY.64	0.001786
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	AY.98	0.000237
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	AY.99	0.003148
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	B.1.1.207	0.003546
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	B.1.1.236	0.02069
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	B.1.1.267	0.030303
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	B.1.1.291	0.002227
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	B.1.1.326	0.005282
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	B.1.1.50	0.002037
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	B.1.1.51	0.005155
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	B.1.1.521	0.016043
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	B.1.118	0.020134
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	B.1.177.12	0.000455
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	B.1.177.77	0.002179
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	B.1.210	0.006397
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	B.1.222	0.005076
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	B.1.336	0.007317
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	B.1.497	0.000944
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	B.1.525	0.000339
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	B.1.580	0.012195
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	B.1.595	0.000783
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	B.4.1	0.056604
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	B.55	0.00885
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	C.18	0.007772
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	3	3	D.2	0.000225
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	A.1	0.000564
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	A.2	0.001324
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	A.2.2	0.003378
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	A.3	0.004193
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	AY.10	0.00106
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	AY.118	0.000125
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	AY.12	0.000632
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	AY.16.1	0.00094
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	AY.2	0.000712
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	AY.24	0.000862
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	AY.32	0.001065
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	AY.4.3	0.001684
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	AY.46.3	0.001867
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	AY.58	0.001815
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	AY.69	0.000373
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	AY.7.1	0.000225
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	AY.70	0.000417
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	AY.72	0.002721
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	AY.85	0.000854
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	AY.9.1	0.000167
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	AY.91	0.001461
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	AY.92	0.000575
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.1.1	0.000653
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.1.198	0.002937
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.1.263	0.003115
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.1.284	0.000215
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.1.305	0.007722
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.1.33	0.000842
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.1.377	0.002762
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.1.428	0.018868
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.1.44	0.004819
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.1.507	0.017391
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.1.83	0.00542
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.177.65	0.001331
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.177.69	0.002967
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.199	0.008264
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.324	0.00321
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.333	0.021053
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.415.1	0.015152
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.416.1	0.003125
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.453	0.006472
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.480	0.004975
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.524	0.002813
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.582	0.000981
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.1.588	0.00182
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	B.4	0.004415
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	P.1.1	0.000635
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	P.1.10	0.000539
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	P.1.17	0.000324
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	2	2	P.6	0.006289
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	A.2.5.2	0.001572
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	A.23	0.010526
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	AF.1	0.037037
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	AP.1	0.001502
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	AY.101	0.00049
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	AY.120.1	0.000321
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	AY.19	0.00114
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	AY.23.1	0.000417
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	AY.28	0.00189
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	AY.35	0.000233
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	AY.38	0.000499
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	AY.39.1.1	0.000725
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	AY.46.4	0.000165
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	AY.5.3	0.000337
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	AY.57	0.000656
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	AY.60	0.000938
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	AY.67	0.000464
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	AY.73	0.000665
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	AY.74	0.000116
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	AY.77	0.001127
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	AY.8	0.000606
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	AY.89	0.004902
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	AY.94	0.000443
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.12	0.007463
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.141	0.002012
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.153	0.001095
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.171	0.003676
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.174	0.003378
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.189	0.001513
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.196	0.005714
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.221	0.010101
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.228	0.003049
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.231	0.003096
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.277	0.000759
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.279	0.001121
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.289	0.002083
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.294	0.001266
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.304	0.002809
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	1	1	B.1.1.334	0.016393
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.354	0.004386
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.359	0.027778
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.363	0.005988
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.370	0.012658
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.397	0.002252
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.417	0.002703
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.47	0.005348
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.512	0.028571
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.54	0.003021
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.61	0.008772
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.8	0.003584
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.1.99	0.02381
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.110.3	0.000718
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.139	0.000733
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.177.17	0.000821
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.177.23	0.003236
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.177.4	0.000211
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.177.42	0.000894
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.177.48	0.003125
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.177.53	0.002392
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.177.62	0.001192
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.177.8	0.000752
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.177.84	0.006667
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.194	0.04
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.206	0.000816
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.214.2	0.0006
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.22	0.001318
ORF1ab/nsp14A2-B	280	L280L	ctA	ctG	1	1	B.1.258.14	0.00098
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.258.16	0.001637
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.258.3	0.001675
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.258.7	0.001912
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.268	0.010417
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.284	0.013158
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.326	0.007576
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.356	0.001727
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.361	0.001289
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.371	0.001122
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.375	0.00082
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.391	0.001127
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.398	0.002976
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.399	0.001934
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.413	0.004255
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.432	0.011236
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.446	0.02
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.499	0.00105
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.513	0.013889
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.517	0.000427
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.530	0.007143
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.540	0.009709
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.542	0.03125
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.565	0.00081
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.567	0.003333
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.577	0.000687
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.590	0.004545
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.600	0.005848
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.618	0.004032
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.631	0.003367
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.633	0.041667
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.634	0.003425
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.1.638	0.052632
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.3	0.000831
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	B.6.6	0.000889
ORF1ab/nsp14A2-B	280	L280L	ctA	ctT	1	1	C.16	0.00106
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	C.35	0.000774
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	C.36.1	0.004149
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	L.3	0.003546
ORF1ab/nsp14A2-B	280	L280L	Cta	Tta	1	1	P.1.7	0.000319

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.