CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : Mut = L177F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp14A2-B	177	L177F	L6102F	nonsyn	Ctc	Ttc	8732	8719	0.998511	18568-18570
ORF1ab/nsp14A2-B	177	L177F	L6102F	nonsyn	CtC	TtT	8732	13	0.00148878	18568-18570

Details of the mutation L177F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	8719	8732	All	0.001668
ORF1ab/nsp14A2-B	177	L177F	CtC	TtT	13	8732	All	0.000002
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2442	2444	B.1.1.7	0.002186
ORF1ab/nsp14A2-B	177	L177F	CtC	TtT	2	2444	B.1.1.7	0.000002
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	749	749	AY.4	0.001166
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	643	643	D.2	0.048252
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	519	519	AY.25	0.003122
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	447	447	B.1.2	0.003936
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	365	366	B.1.36.17	0.180336
ORF1ab/nsp14A2-B	177	L177F	CtC	TtT	1	366	B.1.36.17	0.000494
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	304	304	B.1.617.2	0.001145
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	286	286	B.1.621	0.025316
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	234	234	AY.43	0.001037
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	177	180	B.1	0.001621
ORF1ab/nsp14A2-B	177	L177F	CtC	TtT	3	180	B.1	0.000027
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	134	134	P.1	0.002111
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	118	118	P.1.7	0.037676
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	114	114	AY.3	0.001134
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	111	111	B.1.1	0.002014
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	91	91	B.1.243	0.006332
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	87	87	AY.103	0.00054
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	70	70	AY.44	0.000426
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	62	65	AY.39	0.001532
ORF1ab/nsp14A2-B	177	L177F	CtC	TtT	3	65	AY.39	0.000074
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	61	61	B.1.113	0.953125
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	59	59	B.1.524	0.082982
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	58	58	B.1.160	0.001809
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	49	49	B.1.177	0.000645
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	48	48	AZ.2	0.039409
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	45	45	AY.5	0.000929
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	42	42	B.1.351	0.001249
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	41	41	AY.46.6	0.002961
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	40	40	B.1.429	0.000941
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	38	38	AY.29	0.000599
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	38	38	B.1.526	0.000893
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	34	34	AY.26	0.000963
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	33	33	AY.20	0.001283
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	33	33	AY.42	0.001328
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	32	32	AY.100	0.001472
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	26	27	AY.107	0.012116
ORF1ab/nsp14A2-B	177	L177F	CtC	TtT	1	27	AY.107	0.000466
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	25	25	AY.47	0.000778
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	22	22	B.1.320	0.027397
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	22	22	C.37	0.002553
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	21	21	AY.102	0.000557
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	21	21	B.1.1.317	0.008646
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	21	21	B.1.596	0.00183
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	19	19	A.23.1	0.01338
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	18	18	A.2.5	0.008982
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	18	18	AY.61	0.001886
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	18	18	AY.98.1	0.000872
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	18	18	B.1.1.189	0.027231
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	18	18	B.1.351.3	0.015776
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	18	18	B.1.517	0.007686
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	16	16	B.1.530	0.114286
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	15	15	B.1.525	0.001697
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	15	15	B.1.625	0.035294
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	14	14	AY.114	0.003235
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	14	14	B.1.1.519	0.000556
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	14	14	B.1.377	0.063927
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	14	14	C.1.2	0.059574
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	12	12	B.1.1.301	0.014151
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	12	12	B.1.1.39	0.006116
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	12	12	B.1.369	0.003423
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	11	11	AU.1	0.013924
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	11	11	AY.111	0.002015
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	11	11	AY.39.1	0.000436
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	11	11	AY.75.1	0.001983
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	11	11	P.1.14	0.000526
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	10	10	AY.106	0.003349
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	10	10	AY.68	0.002737
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	10	10	B.1.1.222	0.00204
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	10	10	B.1.258.17	0.00104
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	10	10	B.1.626	0.057143
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	9	9	AY.117	0.000761
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	9	9	AY.4.2	0.000195
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	9	9	AY.4.4	0.003682
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	9	9	AY.41	0.002646
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	9	9	AY.71	0.004276
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	9	9	B.1.1.214	0.000499
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	9	9	B.1.1.434	0.003137
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	9	9	B.1.221	0.000639
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	9	9	B.1.258	0.000599
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	9	9	P.1.17	0.001456
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	8	8	P.1.15	0.001859
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	8	8	Q.8	0.001319
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	7	7	AY.120	0.00026
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	7	7	B.1.1.37	0.00135
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	7	7	B.1.1.44	0.016867
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	7	7	B.1.221.3	0.005833
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	7	7	B.1.427	0.000353
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	7	7	P.2	0.001306
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	6	6	A	0.002322
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	6	6	AE.8	0.002934
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	6	6	AY.45	0.00073
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	6	6	B	0.000767
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	6	6	B.1.1.294	0.007595
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	6	6	B.1.177.17	0.004926
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	6	6	B.1.177.73	0.003398
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	6	6	B.1.247	0.089552
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	6	6	P.1.16	0.002245
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	6	6	Q.1	0.000758
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	5	5	A.19	0.04717
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	5	5	AY.27	0.000324
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	5	5	AY.6	0.000206
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	5	5	AZ.1	0.004337
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	5	5	B.1.177.81	0.000947
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	5	5	B.1.289	0.013298
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	5	5	B.1.438.1	0.000536
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	5	5	B.1.438.3	0.384615
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	5	5	B.40	0.001821
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	5	5	P.5	0.068493
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	5	5	Q.2	0.003067
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	4		0.111111
ORF1ab/nsp14A2-B	177	L177F	CtC	TtT	2	4		0.111111
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	4	4	AY.119	0.000141
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	4	4	AY.120.2.1	0.001993
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	4	4	AY.36	0.000593
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	4	4	AY.75	0.000224
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	4	4	AY.9.2	0.000147
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	4	4	B.1.1.33	0.001684
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	4	4	B.1.177.23	0.012945
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	4	4	B.1.177.4	0.000844
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	4	4	B.1.177.57	0.001124
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	4	4	B.1.177.86	0.000734
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	4	4	B.1.258.14	0.003922
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	4	4	B.1.466.2	0.001565
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	4	4	B.1.577	0.002749
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	4	4	B.1.617.1	0.000516
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	4	4	B.1.619.1	0.002566
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	4	4	C.36	0.003643
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	4	4	U.3	0.015444
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	AY.120.1	0.000963
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	AY.29.1	0.000662
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	AY.3.1	0.000256
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	AY.54	0.000286
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	AY.57	0.001969
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	AY.74	0.000347
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	AY.9	0.000203
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	B.1.1.1	0.00098
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	B.1.1.28	0.000934
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	B.1.1.284	0.000322
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	B.1.1.318	0.000905
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	B.1.128	0.001906
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	B.1.177.7	0.000495
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	B.1.349	0.002144
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	B.1.36	0.000438
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	B.1.480	0.007463
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	B.1.546	0.011111
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	B.1.575	0.00091
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	B.1.589	0.022727
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	B.1.595	0.000783
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	B.1.621.1	0.001517
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	N.5	0.0053
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	3	3	P.1.10	0.000808
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	AY.108	0.002205
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	AY.113	0.000285
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	AY.12	0.000632
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	AY.23	0.000139
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	AY.30	0.000791
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	AY.32	0.001065
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	AY.4.5	0.000215
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	AY.5.3	0.000675
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	AY.58	0.001815
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	AY.67	0.000929
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	AY.7	0.000392
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	AY.98	0.000158
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	B.1.1.216	0.001781
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	B.1.1.231	0.006192
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	B.1.1.351	0.005587
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	B.1.1.370	0.025316
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	B.1.177.12	0.000303
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	B.1.177.21	0.000153
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	B.1.232	0.001075
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	B.1.235	0.005038
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	B.1.240	0.000431
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	B.1.279	0.001027
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	B.1.311	0.000549
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	B.1.362	0.003082
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	B.1.400	0.000858
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	B.1.409	0.001563
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	B.1.564	0.000852
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	B.1.623	0.001073
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	B.1.628	0.000705
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	B.1.637	0.000146
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	C.36.3	0.001134
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	P.1.1	0.000635
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	2	2	Q.3	0.00029
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	A.1	0.000282
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	A.27	0.001656
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	A.5	0.001923
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.104	0.001984
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.116	0.000287
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.116.1	0.000311
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.118	0.000063
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.14	0.000088
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.19	0.00114
ORF1ab/nsp14A2-B	177	L177F	CtC	TtT	1	1	AY.2	0.000356
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.33	0.000067
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.34	0.000097
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.34.1	0.00051
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.4.2.1	0.000149
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.4.3	0.000842
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.40	0.000964
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.46	0.000104
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.46.2	0.000635
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.46.4	0.000165
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.46.5	0.000198
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.53	0.000288
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.59	0.00053
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.63	0.000387
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.65	0.000533
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.73	0.000665
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.81	0.001992
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.84	0.000437
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.87	0.000833
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.9.1	0.000084
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.91	0.00073
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.92	0.000287
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.93	0.000273
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	AY.95	0.000761
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.148	0.008772
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.170	0.001247
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.207	0.001182
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.220	0.001859
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.232	0.001815
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.241	0.00207
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.255	0.00303
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.275	0.011236
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.285	0.006536
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.291	0.000742
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.306	0.000438
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.311	0.000358
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.328	0.016949
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.348	0.000796
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.368	0.003086
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.375	0.011905
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.388	0.045455
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.389	0.006061
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.398	0.003226
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.409	0.002833
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.420	0.001006
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.486	0.001577
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.50	0.000679
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.52	0.012195
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.521	0.005348
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.58	0.005376
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.63	0.000386
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.1.70	0.000341
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.108	0.005814
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.111	0.001175
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.139	0.000733
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.160.28	0.002924
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.160.32	0.004292
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.177.10	0.000878
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.177.32	0.00135
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.177.54	0.000606
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.177.60	0.000218
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.177.65	0.000665
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.177.69	0.001484
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.177.8	0.000752
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.177.83	0.001481
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.177.87	0.000728
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.215	0.009615
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.234	0.000132
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.258.11	0.000396
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.260	0.003344
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.334	0.018182
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.351.2	0.000303
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.36.18	0.00042
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.36.28	0.005747
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.36.38	0.001642
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.36.8	0.001
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.375	0.00082
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.381	0.007812
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.389	0.001002
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.399	0.001934
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.416.1	0.001563
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.439	0.005917
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.471	0.002732
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.474	0.001901
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.499	0.00105
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.509	0.000866
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.528	0.047619
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.538	0.008065
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.551	0.00129
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.561	0.000397
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.582	0.000491
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.597	0.00463
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.609	0.000479
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.627	0.00202
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.1.634	0.003425
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.3	0.000831
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.39	0.002331
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.4	0.002208
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	B.61	0.005747
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	C.1	0.002392
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	C.11	0.010638
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	C.16	0.00106
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	C.30	0.001727
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	C.35	0.000774
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	D.5	0.004975
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	L.3	0.003546
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	N.10	0.029412
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	P.1.12	0.000484
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	P.1.17.1	0.000875
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	P.3	0.001595
ORF1ab/nsp14A2-B	177	L177F	Ctc	Ttc	1	1	P.6	0.003145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.