CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 74 | I74I | I5999I | syn | atC | atT | 1773 | 1548 | 0.873096 | 18259-18261 |
ORF1ab/nsp14A2-B | 74 | I74I | I5999I | syn | atC | atA | 1773 | 225 | 0.126904 | 18259-18261 |
Details of the mutation I74I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1548 | 1773 | All | 0.000296 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 225 | 1773 | All | 0.000043 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 273 | 274 | B.1.1.7 | 0.000244 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 1 | 274 | B.1.1.7 | 0.000001 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 120 | 220 | AY.3 | 0.001194 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 100 | 220 | AY.3 | 0.000995 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 162 | 168 | B.1.617.2 | 0.00061 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 6 | 168 | B.1.617.2 | 0.000023 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 127 | 134 | AY.4 | 0.000198 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 7 | 134 | AY.4 | 0.000011 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 99 | 99 | AY.102 | 0.002625 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 75 | 75 | B.1.429 | 0.001765 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 55 | 58 | AY.44 | 0.000335 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 3 | 58 | AY.44 | 0.000018 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 46 | 57 | B.1.1 | 0.000834 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 11 | 57 | B.1.1 | 0.0002 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 54 | 54 | AY.111 | 0.00989 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 54 | 54 | B.1.427 | 0.002727 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 37 | 37 | B.1.177 | 0.000487 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 35 | 35 | AY.47 | 0.001089 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 27 | 29 | AY.103 | 0.000168 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 2 | 29 | AY.103 | 0.000012 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 29 | 29 | B.1.1.464 | 0.04271 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 29 | 29 | P.1 | 0.000457 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 27 | 28 | B.1.2 | 0.000238 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 1 | 28 | B.1.2 | 0.000009 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 27 | 27 | B.1.1.25 | 0.01535 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 21 | 24 | B.1 | 0.000192 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 3 | 24 | B.1 | 0.000027 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 22 | 22 | P.1.14 | 0.001052 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 20 | 20 | AY.29 | 0.000315 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 16 | 19 | AY.43 | 0.000071 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 3 | 19 | AY.43 | 0.000013 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 17 | 18 | B.1.595 | 0.004436 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 1 | 18 | B.1.595 | 0.000261 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 10 | 12 | AY.39 | 0.000247 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 2 | 12 | AY.39 | 0.000049 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 10 | 12 | AY.74 | 0.001156 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 2 | 12 | AY.74 | 0.000231 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 10 | 11 | AY.25 | 0.00006 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 1 | 11 | AY.25 | 0.000006 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 8 | 9 | AY.4.2 | 0.000174 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 1 | 9 | AY.4.2 | 0.000022 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 8 | 8 | AY.45 | 0.000973 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 6 | 8 | B.1.1.519 | 0.000238 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 2 | 8 | B.1.1.519 | 0.000079 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 8 | 8 | B.1.234 | 0.001056 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 8 | 8 | Q.2 | 0.004908 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 6 | 6 | B.1.111 | 0.007051 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 4 | 6 | B.1.596 | 0.000349 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 2 | 6 | B.1.596 | 0.000174 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 5 | 5 | AY.39.1.1 | 0.003623 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 5 | 5 | B.1.637 | 0.000365 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 4 | 4 | AY.23.1 | 0.001669 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 4 | 4 | B.1.127 | 0.008791 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 4 | 4 | B.1.258.17 | 0.000416 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 2 | 3 | AY.117 | 0.000169 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 1 | 3 | AY.117 | 0.000085 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 2 | 3 | AY.54 | 0.000191 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 3 | AY.54 | 0.000095 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 3 | 3 | B.1.177.6 | 0.00293 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 3 | 3 | B.1.177.77 | 0.002179 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 2 | AY.100 | 0.000046 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 1 | 2 | AY.100 | 0.000046 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 1 | 2 | AY.41 | 0.000294 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 2 | AY.41 | 0.000294 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 2 | 2 | B.1.177.11 | 0.003396 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 2 | 2 | P.6 | 0.006289 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | 0.055556 | |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 1 | 1 | B.1.1.88 | 0.071429 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atA | 1 | 1 | B.1.325 | 0.006897 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.1.36.33 | 0.007576 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.1.511 | 0.034483 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.10 | 0.008264 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp14A2-B | 74 | I74I | atC | atT | 1 | 1 | P.1.7 | 0.000319 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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