CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 15 | I15T | I5940T | nonsyn | aTc | aCc | 2360 | 2358 | 0.999153 | 18082-18084 |
ORF1ab/nsp14A2-B | 15 | I15T | I5940T | nonsyn | aTC | aCG | 2360 | 2 | 0.000847458 | 18082-18084 |
Details of the mutation I15T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 2358 | 2360 | All | 0.000451 |
ORF1ab/nsp14A2-B | 15 | I15T | aTC | aCG | 2 | 2360 | All | 0 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 651 | 651 | B.1.177.43 | 0.961595 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 303 | 303 | B.1.2 | 0.002668 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 299 | 299 | AY.25 | 0.001798 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 184 | 184 | AY.4 | 0.000286 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 103 | 103 | B.1.1 | 0.001869 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 73 | 73 | B.1.617.2 | 0.000275 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 72 | 72 | AE.8 | 0.035208 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 50 | 50 | B.1.1.7 | 0.000045 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 46 | 46 | AY.103 | 0.000286 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 42 | 42 | B.1 | 0.000385 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 36 | 36 | AY.44 | 0.000219 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 30 | 30 | B.1.234 | 0.003958 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 26 | 26 | AY.84 | 0.011374 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 24 | 24 | AY.47 | 0.000747 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 23 | 23 | AY.29 | 0.000363 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 22 | 23 | AY.43 | 0.000097 |
ORF1ab/nsp14A2-B | 15 | I15T | aTC | aCG | 1 | 23 | AY.43 | 0.000004 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 19 | 19 | AY.46.4 | 0.003126 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 19 | 19 | B.1.177.75 | 0.019771 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 18 | 18 | B.1.160 | 0.000561 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 17 | 17 | B.1.1.464 | 0.025037 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 16 | 16 | B.1.177 | 0.000211 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 16 | 16 | B.1.243 | 0.001113 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 14 | 14 | B.1.1.214 | 0.000776 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 10 | 10 | B.1.177.31 | 0.114943 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 8 | 8 | B.1.177.83 | 0.011852 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 7 | 7 | AY.16 | 0.002658 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 7 | 7 | B.1.1.519 | 0.000278 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 6 | 6 | B | 0.000767 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 6 | 6 | B.1.160.32 | 0.025751 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 6 | 6 | B.1.177.44 | 0.003114 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 5 | 5 | B.1.416.1 | 0.007812 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 4 | 4 | B.1.1.70 | 0.001364 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 4 | 4 | B.1.524 | 0.005626 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 2 | 2 | B.1.160.10 | 0.016129 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 2 | 2 | B.1.177.52 | 0.003515 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 2 | 2 | B.1.258.11 | 0.000793 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 2 | 2 | B.1.523 | 0.004902 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 2 | 2 | B.1.538 | 0.016129 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 2 | 2 | B.1.541 | 0.00885 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.18 | 0.010101 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp14A2-B | 15 | I15T | aTC | aCG | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.1.254 | 0.011236 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | B.1.601 | 0.030303 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp14A2-B | 15 | I15T | aTc | aCc | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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