CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 455 | H455del | H6380del | del | CAT | --- | 1457 | 1457 | 1 | 19402-19404 |
Details of the mutation H455del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1457 | 1457 | All | 0.000279 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 172 | 172 | AY.43 | 0.000762 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 146 | 146 | B.1.617.2 | 0.00055 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 141 | 141 | B.1.2 | 0.001242 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 101 | 101 | B.1 | 0.000925 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 93 | 93 | B.1.1.7 | 0.000083 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 49 | 49 | AY.44 | 0.000298 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 47 | 47 | AY.75 | 0.002633 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 46 | 46 | AY.25 | 0.000277 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 43 | 43 | B.1.1 | 0.00078 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 38 | 38 | AY.9.2 | 0.001396 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 30 | 30 | AY.3 | 0.000298 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 27 | 27 | AY.39 | 0.000667 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 26 | 26 | AY.52 | 0.021173 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 25 | 25 | AY.103 | 0.000155 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 21 | 21 | B.1.596 | 0.00183 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 20 | 20 | AY.102 | 0.00053 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 18 | 18 | B.1.351 | 0.000535 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 17 | 17 | AY.34.1 | 0.008669 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 17 | 17 | B.1.526 | 0.0004 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 16 | 16 | B.1.617.1 | 0.002063 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 15 | 15 | AY.65 | 0.007996 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 13 | 13 | AY.120 | 0.000483 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 13 | 13 | B.1.177 | 0.000171 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 11 | 11 | B.1.429 | 0.000259 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 10 | 10 | AY.119 | 0.000353 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 10 | 10 | AY.98.1 | 0.000484 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 9 | 9 | B.1.243 | 0.000626 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 9 | 9 | B.1.576 | 0.00816 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 8 | 8 | AY.3.1 | 0.000682 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 8 | 8 | AY.40 | 0.007715 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 7 | 7 | AY.118 | 0.000439 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 7 | 7 | AY.75.1 | 0.001262 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 6 | 6 | AY.110 | 0.000676 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 6 | 6 | AY.13 | 0.000966 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 6 | 6 | AY.5.3 | 0.002024 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 6 | 6 | AY.55 | 0.005505 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 5 | 5 | AY.5.4 | 0.001384 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 5 | 5 | B.1.517 | 0.002135 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 4 | 4 | AY.101 | 0.001962 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 4 | 4 | AY.11 | 0.005355 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 4 | 4 | B.1.1.37 | 0.000771 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 4 | 4 | B.1.260 | 0.013378 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 4 | 4 | B.1.265 | 0.005083 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 3 | 3 | AY.107 | 0.001398 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 3 | 3 | B.1.1.174 | 0.010135 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 3 | 3 | B.1.1.218 | 0.023077 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 3 | 3 | B.1.1.416 | 0.002715 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 3 | 3 | B.1.349 | 0.002144 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 3 | 3 | B.1.568 | 0.003333 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | AY.21 | 0.003795 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | AY.97 | 0.003401 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | B | 0.000256 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | B.1.533 | 0.019231 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.1.320 | 0.018182 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.291 | 0.019231 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.633 | 0.041667 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | C.5 | 0.090909 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp14A2-B | 455 | H455del | CAT | --- | 1 | 1 | W.1 | 0.008696 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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