CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 455 | H455H | H6380H | syn | caT | caC | 1227 | 1227 | 1 | 19402-19404 |
Details of the mutation H455H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1227 | 1227 | All | 0.000235 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 407 | 407 | B.1.617.2 | 0.001533 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 239 | 239 | AY.102 | 0.006337 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 90 | 90 | AY.44 | 0.000548 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 79 | 79 | AY.25 | 0.000475 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 64 | 64 | B.1.1.39 | 0.03262 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 53 | 53 | R.1 | 0.00477 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 45 | 45 | B.1.438.2 | 0.865385 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 25 | 25 | B.1.1.7 | 0.000022 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 19 | 19 | B.1.2 | 0.000167 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 15 | 15 | AY.43 | 0.000066 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 15 | 15 | B.1.234 | 0.001979 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 13 | 13 | AY.9.2 | 0.000477 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 10 | 10 | AY.104 | 0.019841 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 10 | 10 | B.1.1.318 | 0.003018 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 9 | 9 | B.1.526 | 0.000212 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 8 | 8 | AY.46 | 0.000833 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 7 | 7 | AY.59 | 0.003708 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 5 | 5 | AY.99 | 0.005247 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 4 | 4 | AY.34.1 | 0.00204 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 3 | 3 | AY.108 | 0.003308 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 2 | 2 | B.1.381 | 0.015625 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 2 | 2 | B.1.556 | 0.015038 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp14A2-B | 455 | H455H | caT | caC | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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