CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp14A2-B | 330 | H330H | H6255H | syn | caC | caT | 3255 | 3255 | 1 | 19027-19029 |
Details of the mutation H330H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3255 | 3255 | All | 0.000623 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 634 | 634 | B.1.241 | 0.51461 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 556 | 556 | B.1.1.7 | 0.000498 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 522 | 522 | AY.4 | 0.000812 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 200 | 200 | AY.120 | 0.007436 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 159 | 159 | AY.4.2 | 0.003449 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 138 | 138 | AY.103 | 0.000857 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 71 | 71 | AY.43 | 0.000315 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 53 | 53 | B.1.2 | 0.000467 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 50 | 50 | B.1.1.1 | 0.016335 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 50 | 50 | B.1.617.2 | 0.000188 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 47 | 47 | B.1.609 | 0.022531 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 45 | 45 | AY.44 | 0.000274 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 40 | 40 | B.1.1.39 | 0.020387 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 39 | 39 | AY.118 | 0.002443 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 37 | 37 | B.1 | 0.000339 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 33 | 33 | AY.119 | 0.001165 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 33 | 33 | P.1 | 0.00052 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 27 | 27 | B.1.1.307 | 0.068354 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 25 | 25 | AY.3 | 0.000249 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 24 | 24 | B.1.429 | 0.000565 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 21 | 21 | B.1.36.17 | 0.010375 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 20 | 20 | B.1.351 | 0.000595 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 18 | 18 | AY.9.2 | 0.000661 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 17 | 17 | AY.102 | 0.000451 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 17 | 17 | B.1.1 | 0.000308 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 17 | 17 | B.1.177 | 0.000224 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 16 | 16 | AY.25 | 0.000096 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 16 | 16 | B.1.243 | 0.001113 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 14 | 14 | AY.39 | 0.000346 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 13 | 13 | B.1.371 | 0.01459 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 13 | 13 | P.1.14 | 0.000621 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 12 | 12 | AY.46 | 0.001249 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 10 | 10 | AY.91 | 0.007305 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 9 | 9 | AY.47 | 0.00028 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 9 | 9 | B.1.221 | 0.000639 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 9 | 9 | B.1.621 | 0.000797 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 9 | 9 | B.30 | 0.132353 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 8 | 8 | AY.34 | 0.000776 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 8 | 8 | B.1.1.282 | 0.093023 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 4 | 4 | B | 0.000511 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 4 | 4 | B.1.369 | 0.001141 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.73 | 0.001996 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.1.52 | 0.02439 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.126 | 0.002551 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.511 | 0.068966 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.530 | 0.014286 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.558 | 0.009132 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.575.1 | 0.004878 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | C.14 | 0.008658 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.482 | 0.023256 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | B.60 | 0.015873 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp14A2-B | 330 | H330H | caC | caT | 1 | 1 | P.3 | 0.001595 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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