CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : Mut = H26Y

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B26H26YH5951YnonsynCacTac1976919769118115-18117

Details of the mutation H26Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B26H26YCacTac1976919769All0.003781
ORF1ab/nsp14A2-B26H26YCacTac1168811688AY.3.10.996504
ORF1ab/nsp14A2-B26H26YCacTac17141714AY.40.002668
ORF1ab/nsp14A2-B26H26YCacTac754754B.1.1.70.000675
ORF1ab/nsp14A2-B26H26YCacTac720720A.2.50.359281
ORF1ab/nsp14A2-B26H26YCacTac698698B.1.20.006146
ORF1ab/nsp14A2-B26H26YCacTac435435AY.1030.002701
ORF1ab/nsp14A2-B26H26YCacTac331331B.1.617.20.001246
ORF1ab/nsp14A2-B26H26YCacTac278278AY.340.026956
ORF1ab/nsp14A2-B26H26YCacTac203203AY.30.002019
ORF1ab/nsp14A2-B26H26YCacTac174174AY.250.001047
ORF1ab/nsp14A2-B26H26YCacTac127127AY.430.000563
ORF1ab/nsp14A2-B26H26YCacTac126126B.1.4290.002965
ORF1ab/nsp14A2-B26H26YCacTac123123B.1.1770.00162
ORF1ab/nsp14A2-B26H26YCacTac118118AY.920.033898
ORF1ab/nsp14A2-B26H26YCacTac111111P.10.001749
ORF1ab/nsp14A2-B26H26YCacTac101101AY.1190.003566
ORF1ab/nsp14A2-B26H26YCacTac9393AY.440.000566
ORF1ab/nsp14A2-B26H26YCacTac8686B.10.000788
ORF1ab/nsp14A2-B26H26YCacTac7979B.1.2400.01703
ORF1ab/nsp14A2-B26H26YCacTac7474C.30.564885
ORF1ab/nsp14A2-B26H26YCacTac6363AY.840.027559
ORF1ab/nsp14A2-B26H26YCacTac6060B.1.2340.007917
ORF1ab/nsp14A2-B26H26YCacTac5151AY.1170.00431
ORF1ab/nsp14A2-B26H26YCacTac5151AY.330.003406
ORF1ab/nsp14A2-B26H26YCacTac5050B.1.10.000907
ORF1ab/nsp14A2-B26H26YCacTac4747AY.1080.051819
ORF1ab/nsp14A2-B26H26YCacTac4747AY.200.001827
ORF1ab/nsp14A2-B26H26YCacTac4747AY.350.010953
ORF1ab/nsp14A2-B26H26YCacTac4747AY.980.003713
ORF1ab/nsp14A2-B26H26YCacTac4343AY.1180.002694
ORF1ab/nsp14A2-B26H26YCacTac4242AY.1210.005683
ORF1ab/nsp14A2-B26H26YCacTac4040AY.390.000988
ORF1ab/nsp14A2-B26H26YCacTac3535B.1.2580.002329
ORF1ab/nsp14A2-B26H26YCacTac3434AY.60.001398
ORF1ab/nsp14A2-B26H26YCacTac3131AY.470.000964
ORF1ab/nsp14A2-B26H26YCacTac2929AY.50.000599
ORF1ab/nsp14A2-B26H26YCacTac2828AA.10.202899
ORF1ab/nsp14A2-B26H26YCacTac2828AY.420.001126
ORF1ab/nsp14A2-B26H26YCacTac2828B.1.214.30.2
ORF1ab/nsp14A2-B26H26YCacTac2727B.1.5260.000635
ORF1ab/nsp14A2-B26H26YCacTac2525B.1.3510.000743
ORF1ab/nsp14A2-B26H26YCacTac2424B.1.177.661
ORF1ab/nsp14A2-B26H26YCacTac2424B.1.3290.014581
ORF1ab/nsp14A2-B26H26YCacTac2323B.1.1600.000717
ORF1ab/nsp14A2-B26H26YCacTac2222AY.1020.000583
ORF1ab/nsp14A2-B26H26YCacTac2222B.1.1.370.004243
ORF1ab/nsp14A2-B26H26YCacTac2121B.1.1.2140.001165
ORF1ab/nsp14A2-B26H26YCacTac1919AY.1050.012219
ORF1ab/nsp14A2-B26H26YCacTac1919B.1.6230.010193
ORF1ab/nsp14A2-B26H26YCacTac1818AY.99.20.001659
ORF1ab/nsp14A2-B26H26YCacTac1717AY.1060.005693
ORF1ab/nsp14A2-B26H26YCacTac1717AY.260.000481
ORF1ab/nsp14A2-B26H26YCacTac1717AY.460.001769
ORF1ab/nsp14A2-B26H26YCacTac1515B.1.6210.001328
ORF1ab/nsp14A2-B26H26YCacTac1515P.1.140.000717
ORF1ab/nsp14A2-B26H26YCacTac1414AY.230.000976
ORF1ab/nsp14A2-B26H26YCacTac1414AY.940.006197
ORF1ab/nsp14A2-B26H26YCacTac1414B.1.1.5230.021875
ORF1ab/nsp14A2-B26H26YCacTac1313AY.46.60.000939
ORF1ab/nsp14A2-B26H26YCacTac1313AY.930.00355
ORF1ab/nsp14A2-B26H26YCacTac1313B.1.5950.003392
ORF1ab/nsp14A2-B26H26YCacTac1313B.1.5960.001133
ORF1ab/nsp14A2-B26H26YCacTac1212AY.290.000189
ORF1ab/nsp14A2-B26H26YCacTac1212AY.39.10.000475
ORF1ab/nsp14A2-B26H26YCacTac1212B.1.177.210.000918
ORF1ab/nsp14A2-B26H26YCacTac1212B.1.2210.000852
ORF1ab/nsp14A2-B26H26YCacTac1212B.1.2220.020305
ORF1ab/nsp14A2-B26H26YCacTac1212P.1.70.003831
ORF1ab/nsp14A2-B26H26YCacTac1111AY.550.010092
ORF1ab/nsp14A2-B26H26YCacTac1111B.1.1.5190.000437
ORF1ab/nsp14A2-B26H26YCacTac1010AY.790.012107
ORF1ab/nsp14A2-B26H26YCacTac1010B.1.3360.02439
ORF1ab/nsp14A2-B26H26YCacTac99B.1.2430.000626
ORF1ab/nsp14A2-B26H26YCacTac88AY.1000.000368
ORF1ab/nsp14A2-B26H26YCacTac88AY.990.008395
ORF1ab/nsp14A2-B26H26YCacTac88B.1.258.170.000832
ORF1ab/nsp14A2-B26H26YCacTac77AY.5.30.002362
ORF1ab/nsp14A2-B26H26YCacTac77AY.590.003708
ORF1ab/nsp14A2-B26H26YCacTac77B.1.1.2430.028571
ORF1ab/nsp14A2-B26H26YCacTac77B.1.177.120.001062
ORF1ab/nsp14A2-B26H26YCacTac77B.1.4530.022654
ORF1ab/nsp14A2-B26H26YCacTac66AY.450.00073
ORF1ab/nsp14A2-B26H26YCacTac66B0.000767
ORF1ab/nsp14A2-B26H26YCacTac66B.1.5820.002944
ORF1ab/nsp14A2-B26H26YCacTac55AY.110.006693
ORF1ab/nsp14A2-B26H26YCacTac55AY.1100.000563
ORF1ab/nsp14A2-B26H26YCacTac55AY.130.000805
ORF1ab/nsp14A2-B26H26YCacTac55AY.960.010373
ORF1ab/nsp14A2-B26H26YCacTac55B.1.1.3970.011261
ORF1ab/nsp14A2-B26H26YCacTac55B.1.3890.00501
ORF1ab/nsp14A2-B26H26YCacTac55B.1.4270.000252
ORF1ab/nsp14A2-B26H26YCacTac55B.1.438.10.000536
ORF1ab/nsp14A2-B26H26YCacTac55C.370.00058
ORF1ab/nsp14A2-B26H26YCacTac55P.1.150.001162
ORF1ab/nsp14A2-B26H26YCacTac55Q.20.003067
ORF1ab/nsp14A2-B26H26YCacTac55Q.80.000825
ORF1ab/nsp14A2-B26H26YCacTac44AY.1160.001147
ORF1ab/nsp14A2-B26H26YCacTac44AY.20.001425
ORF1ab/nsp14A2-B26H26YCacTac44AY.270.000259
ORF1ab/nsp14A2-B26H26YCacTac44AY.540.000381
ORF1ab/nsp14A2-B26H26YCacTac44AY.610.000419
ORF1ab/nsp14A2-B26H26YCacTac44AY.730.002661
ORF1ab/nsp14A2-B26H26YCacTac44AY.820.005427
ORF1ab/nsp14A2-B26H26YCacTac44AY.9.10.000335
ORF1ab/nsp14A2-B26H26YCacTac44AY.98.10.000194
ORF1ab/nsp14A2-B26H26YCacTac44B.1.1.3160.0037
ORF1ab/nsp14A2-B26H26YCacTac44B.1.1.330.001684
ORF1ab/nsp14A2-B26H26YCacTac44B.1.3110.001098
ORF1ab/nsp14A2-B26H26YCacTac44B.1.360.000584
ORF1ab/nsp14A2-B26H26YCacTac44B.1.3690.001141
ORF1ab/nsp14A2-B26H26YCacTac44B.1.5610.001588
ORF1ab/nsp14A2-B26H26YCacTac44C.260.029412
ORF1ab/nsp14A2-B26H26YCacTac33AY.100.00159
ORF1ab/nsp14A2-B26H26YCacTac33AY.1140.000693
ORF1ab/nsp14A2-B26H26YCacTac33AY.4.2.10.000447
ORF1ab/nsp14A2-B26H26YCacTac33AY.690.00056
ORF1ab/nsp14A2-B26H26YCacTac33AY.740.000347
ORF1ab/nsp14A2-B26H26YCacTac33AY.750.000168
ORF1ab/nsp14A2-B26H26YCacTac33B.1.1.280.000934
ORF1ab/nsp14A2-B26H26YCacTac33B.1.1.3890.018182
ORF1ab/nsp14A2-B26H26YCacTac33B.1.1.4330.004274
ORF1ab/nsp14A2-B26H26YCacTac33B.1.2410.002435
ORF1ab/nsp14A2-B26H26YCacTac33B.1.36.80.003
ORF1ab/nsp14A2-B26H26YCacTac33B.1.3710.003367
ORF1ab/nsp14A2-B26H26YCacTac33B.1.5240.004219
ORF1ab/nsp14A2-B26H26YCacTac33B.1.6270.006061
ORF1ab/nsp14A2-B26H26YCacTac33D.20.000225
ORF1ab/nsp14A2-B26H26YCacTac33P.1.90.014423
ORF1ab/nsp14A2-B26H26YCacTac22AD.20.000438
ORF1ab/nsp14A2-B26H26YCacTac22AY.1110.000366
ORF1ab/nsp14A2-B26H26YCacTac22AY.1130.000285
ORF1ab/nsp14A2-B26H26YCacTac22AY.1200.000074
ORF1ab/nsp14A2-B26H26YCacTac22AY.23.10.000835
ORF1ab/nsp14A2-B26H26YCacTac22AY.360.000296
ORF1ab/nsp14A2-B26H26YCacTac22AY.380.000999
ORF1ab/nsp14A2-B26H26YCacTac22AY.39.1.10.001449
ORF1ab/nsp14A2-B26H26YCacTac22AY.46.50.000397
ORF1ab/nsp14A2-B26H26YCacTac22AY.620.000871
ORF1ab/nsp14A2-B26H26YCacTac22AY.670.000929
ORF1ab/nsp14A2-B26H26YCacTac22AY.9.20.000073
ORF1ab/nsp14A2-B26H26YCacTac22AY.900.001369
ORF1ab/nsp14A2-B26H26YCacTac22AY.950.001522
ORF1ab/nsp14A2-B26H26YCacTac22B.1.1.1760.000879
ORF1ab/nsp14A2-B26H26YCacTac22B.1.1.2410.004141
ORF1ab/nsp14A2-B26H26YCacTac22B.1.1.3060.000877
ORF1ab/nsp14A2-B26H26YCacTac22B.1.1.4340.000697
ORF1ab/nsp14A2-B26H26YCacTac22B.1.177.860.000367
ORF1ab/nsp14A2-B26H26YCacTac22B.1.214.10.04
ORF1ab/nsp14A2-B26H26YCacTac22B.1.351.30.001753
ORF1ab/nsp14A2-B26H26YCacTac22B.1.36.180.00084
ORF1ab/nsp14A2-B26H26YCacTac22B.1.36.260.005714
ORF1ab/nsp14A2-B26H26YCacTac22B.1.3970.009709
ORF1ab/nsp14A2-B26H26YCacTac22B.1.466.20.000782
ORF1ab/nsp14A2-B26H26YCacTac22B.1.5170.000854
ORF1ab/nsp14A2-B26H26YCacTac22B.1.617.10.000258
ORF1ab/nsp14A2-B26H26YCacTac22B.1.6280.000705
ORF1ab/nsp14A2-B26H26YCacTac22B.1.6350.035088
ORF1ab/nsp14A2-B26H26YCacTac22B.1.6370.000146
ORF1ab/nsp14A2-B26H26YCacTac22C.360.001821
ORF1ab/nsp14A2-B26H26YCacTac11A0.000387
ORF1ab/nsp14A2-B26H26YCacTac11A.10.000282
ORF1ab/nsp14A2-B26H26YCacTac11A.20.000662
ORF1ab/nsp14A2-B26H26YCacTac11A.23.10.000704
ORF1ab/nsp14A2-B26H26YCacTac11A.50.001923
ORF1ab/nsp14A2-B26H26YCacTac11AY.1090.00074
ORF1ab/nsp14A2-B26H26YCacTac11AY.120.2.10.000498
ORF1ab/nsp14A2-B26H26YCacTac11AY.140.000088
ORF1ab/nsp14A2-B26H26YCacTac11AY.220.002092
ORF1ab/nsp14A2-B26H26YCacTac11AY.240.000431
ORF1ab/nsp14A2-B26H26YCacTac11AY.34.10.00051
ORF1ab/nsp14A2-B26H26YCacTac11AY.39.20.001541
ORF1ab/nsp14A2-B26H26YCacTac11AY.4.20.000022
ORF1ab/nsp14A2-B26H26YCacTac11AY.4.30.000842
ORF1ab/nsp14A2-B26H26YCacTac11AY.4.40.000409
ORF1ab/nsp14A2-B26H26YCacTac11AY.4.50.000107
ORF1ab/nsp14A2-B26H26YCacTac11AY.400.000964
ORF1ab/nsp14A2-B26H26YCacTac11AY.46.10.001027
ORF1ab/nsp14A2-B26H26YCacTac11AY.46.40.000165
ORF1ab/nsp14A2-B26H26YCacTac11AY.5.40.000277
ORF1ab/nsp14A2-B26H26YCacTac11AY.580.000907
ORF1ab/nsp14A2-B26H26YCacTac11AY.7.20.000559
ORF1ab/nsp14A2-B26H26YCacTac11AY.770.001127
ORF1ab/nsp14A2-B26H26YCacTac11AY.860.00083
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1.1320.014925
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1.1710.003676
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1.1960.005714
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1.1980.001468
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1.2200.001859
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1.2270.004348
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1.2400.004695
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1.250.000569
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1.2770.000759
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1.3170.000412
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1.3370.003597
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1.3390.010526
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1.3540.004386
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1.4160.000905
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1.4190.007407
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1.480.002874
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1.5240.020833
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1.5260.003546
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1.5280.004808
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1.700.000341
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1100.004525
ORF1ab/nsp14A2-B26H26YCacTac11B.1.110.30.000718
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1260.001276
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1280.000635
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1390.000733
ORF1ab/nsp14A2-B26H26YCacTac11B.1.1570.002985
ORF1ab/nsp14A2-B26H26YCacTac11B.1.177.360.016129
ORF1ab/nsp14A2-B26H26YCacTac11B.1.177.440.000519
ORF1ab/nsp14A2-B26H26YCacTac11B.1.177.60.000977
ORF1ab/nsp14A2-B26H26YCacTac11B.1.177.750.001041
ORF1ab/nsp14A2-B26H26YCacTac11B.1.177.770.000726
ORF1ab/nsp14A2-B26H26YCacTac11B.1.3050.002151
ORF1ab/nsp14A2-B26H26YCacTac11B.1.351.20.000303
ORF1ab/nsp14A2-B26H26YCacTac11B.1.36.100.004785
ORF1ab/nsp14A2-B26H26YCacTac11B.1.36.170.000494
ORF1ab/nsp14A2-B26H26YCacTac11B.1.36.380.001642
ORF1ab/nsp14A2-B26H26YCacTac11B.1.3980.002976
ORF1ab/nsp14A2-B26H26YCacTac11B.1.416.10.001563
ORF1ab/nsp14A2-B26H26YCacTac11B.1.4260.001009
ORF1ab/nsp14A2-B26H26YCacTac11B.1.4360.001029
ORF1ab/nsp14A2-B26H26YCacTac11B.1.4970.000315
ORF1ab/nsp14A2-B26H26YCacTac11B.1.5580.004566
ORF1ab/nsp14A2-B26H26YCacTac11B.1.5700.002941
ORF1ab/nsp14A2-B26H26YCacTac11B.1.5790.011236
ORF1ab/nsp14A2-B26H26YCacTac11B.1.5880.00091
ORF1ab/nsp14A2-B26H26YCacTac11B.1.6190.000871
ORF1ab/nsp14A2-B26H26YCacTac11B.1.930.000934
ORF1ab/nsp14A2-B26H26YCacTac11B.120.00641
ORF1ab/nsp14A2-B26H26YCacTac11B.3.10.001658
ORF1ab/nsp14A2-B26H26YCacTac11B.60.00091
ORF1ab/nsp14A2-B26H26YCacTac11B.6.10.026316
ORF1ab/nsp14A2-B26H26YCacTac11C.180.002591
ORF1ab/nsp14A2-B26H26YCacTac11L.30.003546
ORF1ab/nsp14A2-B26H26YCacTac11N.30.005814
ORF1ab/nsp14A2-B26H26YCacTac11P.1.100.000269
ORF1ab/nsp14A2-B26H26YCacTac11P.1.170.000162
ORF1ab/nsp14A2-B26H26YCacTac11P.20.000187
ORF1ab/nsp14A2-B26H26YCacTac11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.