CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp14A2-B : Mut = G93G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp14A2-B93G93GG6018GsynggGggT659461370.93069518316-18318
ORF1ab/nsp14A2-B93G93GG6018GsynggGggA65943670.055656718316-18318
ORF1ab/nsp14A2-B93G93GG6018GsynggGggC6594900.013648818316-18318

Details of the mutation G93G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp14A2-B93G93GggGggT61376594All0.001174
ORF1ab/nsp14A2-B93G93GggGggA3676594All0.00007
ORF1ab/nsp14A2-B93G93GggGggC906594All0.000017
ORF1ab/nsp14A2-B93G93GggGggT16911779AY.40.002632
ORF1ab/nsp14A2-B93G93GggGggC651779AY.40.000101
ORF1ab/nsp14A2-B93G93GggGggA231779AY.40.000036
ORF1ab/nsp14A2-B93G93GggGggT16181618AY.4.40.662029
ORF1ab/nsp14A2-B93G93GggGggT780782B.1.20.006868
ORF1ab/nsp14A2-B93G93GggGggA2782B.1.20.000018
ORF1ab/nsp14A2-B93G93GggGggT342398B.1.1.70.000306
ORF1ab/nsp14A2-B93G93GggGggA56398B.1.1.70.00005
ORF1ab/nsp14A2-B93G93GggGggT143149AY.440.00087
ORF1ab/nsp14A2-B93G93GggGggA6149AY.440.000037
ORF1ab/nsp14A2-B93G93GggGggT143149B.1.10.002594
ORF1ab/nsp14A2-B93G93GggGggA4149B.1.10.000073
ORF1ab/nsp14A2-B93G93GggGggC2149B.1.10.000036
ORF1ab/nsp14A2-B93G93GggGggT124144B.1.617.20.000467
ORF1ab/nsp14A2-B93G93GggGggA20144B.1.617.20.000075
ORF1ab/nsp14A2-B93G93GggGggT136136D.20.010206
ORF1ab/nsp14A2-B93G93GggGggT122122B.1.2650.155019
ORF1ab/nsp14A2-B93G93GggGggT119119AY.1180.007455
ORF1ab/nsp14A2-B93G93GggGggT96112AY.430.000425
ORF1ab/nsp14A2-B93G93GggGggA16112AY.430.000071
ORF1ab/nsp14A2-B93G93GggGggT72102AY.1030.000447
ORF1ab/nsp14A2-B93G93GggGggA30102AY.1030.000186
ORF1ab/nsp14A2-B93G93GggGggA4280P.10.000662
ORF1ab/nsp14A2-B93G93GggGggT3880P.10.000599
ORF1ab/nsp14A2-B93G93GggGggT7373B.1.1.390.037207
ORF1ab/nsp14A2-B93G93GggGggT5867B.10.000531
ORF1ab/nsp14A2-B93G93GggGggA967B.10.000082
ORF1ab/nsp14A2-B93G93GggGggT3043AY.30.000298
ORF1ab/nsp14A2-B93G93GggGggA1343AY.30.000129
ORF1ab/nsp14A2-B93G93GggGggT3640AY.250.000217
ORF1ab/nsp14A2-B93G93GggGggA440AY.250.000024
ORF1ab/nsp14A2-B93G93GggGggA1929AY.1020.000504
ORF1ab/nsp14A2-B93G93GggGggT1029AY.1020.000265
ORF1ab/nsp14A2-B93G93GggGggT2527AY.260.000708
ORF1ab/nsp14A2-B93G93GggGggA227AY.260.000057
ORF1ab/nsp14A2-B93G93GggGggT2526AY.470.000778
ORF1ab/nsp14A2-B93G93GggGggA126AY.470.000031
ORF1ab/nsp14A2-B93G93GggGggC2026AY.750.00112
ORF1ab/nsp14A2-B93G93GggGggT526AY.750.00028
ORF1ab/nsp14A2-B93G93GggGggA126AY.750.000056
ORF1ab/nsp14A2-B93G93GggGggT1325AY.200.000505
ORF1ab/nsp14A2-B93G93GggGggA1125AY.200.000428
ORF1ab/nsp14A2-B93G93GggGggC125AY.200.000039
ORF1ab/nsp14A2-B93G93GggGggT2222B.1.5960.001917
ORF1ab/nsp14A2-B93G93GggGggT2121AY.1190.000741
ORF1ab/nsp14A2-B93G93GggGggT1520AY.390.000371
ORF1ab/nsp14A2-B93G93GggGggA420AY.390.000099
ORF1ab/nsp14A2-B93G93GggGggC120AY.390.000025
ORF1ab/nsp14A2-B93G93GggGggT1719B.1.4290.0004
ORF1ab/nsp14A2-B93G93GggGggA219B.1.4290.000047
ORF1ab/nsp14A2-B93G93GggGggT1818B.1.3510.000535
ORF1ab/nsp14A2-B93G93GggGggA1616B.1.1790.06015
ORF1ab/nsp14A2-B93G93GggGggA1616B.1.4710.043716
ORF1ab/nsp14A2-B93G93GggGggT814B.1.2580.000532
ORF1ab/nsp14A2-B93G93GggGggA614B.1.2580.000399
ORF1ab/nsp14A2-B93G93GggGggT1313B.1.1.2140.000721
ORF1ab/nsp14A2-B93G93GggGggT1013B.1.1770.000132
ORF1ab/nsp14A2-B93G93GggGggA313B.1.1770.00004
ORF1ab/nsp14A2-B93G93GggGggT611AY.1200.000223
ORF1ab/nsp14A2-B93G93GggGggA511AY.1200.000186
ORF1ab/nsp14A2-B93G93GggGggT811B.1.2210.000568
ORF1ab/nsp14A2-B93G93GggGggA311B.1.2210.000213
ORF1ab/nsp14A2-B93G93GggGggT910AY.1130.001282
ORF1ab/nsp14A2-B93G93GggGggA110AY.1130.000142
ORF1ab/nsp14A2-B93G93GggGggT1010AY.270.000647
ORF1ab/nsp14A2-B93G93GggGggT910B.1.6210.000797
ORF1ab/nsp14A2-B93G93GggGggA110B.1.6210.000089
ORF1ab/nsp14A2-B93G93GggGggT77AY.460.000729
ORF1ab/nsp14A2-B93G93GggGggT77AY.970.011905
ORF1ab/nsp14A2-B93G93GggGggT57B.1.1600.000156
ORF1ab/nsp14A2-B93G93GggGggA27B.1.1600.000062
ORF1ab/nsp14A2-B93G93GggGggT77B.1.3110.001922
ORF1ab/nsp14A2-B93G93GggGggT57C.370.00058
ORF1ab/nsp14A2-B93G93GggGggA27C.370.000232
ORF1ab/nsp14A2-B93G93GggGggT56AY.4.20.000108
ORF1ab/nsp14A2-B93G93GggGggA16AY.4.20.000022
ORF1ab/nsp14A2-B93G93GggGggT56AY.60.000206
ORF1ab/nsp14A2-B93G93GggGggA16AY.60.000041
ORF1ab/nsp14A2-B93G93GggGggT66AY.9.20.00022
ORF1ab/nsp14A2-B93G93GggGggT66B.1.1.1210.014563
ORF1ab/nsp14A2-B93G93GggGggT46B.1.5260.000094
ORF1ab/nsp14A2-B93G93GggGggA26B.1.5260.000047
ORF1ab/nsp14A2-B93G93GggGggT45AY.1000.000184
ORF1ab/nsp14A2-B93G93GggGggA15AY.1000.000046
ORF1ab/nsp14A2-B93G93GggGggT45AY.290.000063
ORF1ab/nsp14A2-B93G93GggGggA15AY.290.000016
ORF1ab/nsp14A2-B93G93GggGggA55AY.300.001979
ORF1ab/nsp14A2-B93G93GggGggT45AY.420.000161
ORF1ab/nsp14A2-B93G93GggGggA15AY.420.00004
ORF1ab/nsp14A2-B93G93GggGggT55AY.90.000338
ORF1ab/nsp14A2-B93G93GggGggA55B.1.1.4640.007364
ORF1ab/nsp14A2-B93G93GggGggT55B.1.1.5190.000199
ORF1ab/nsp14A2-B93G93GggGggT44AY.1210.000541
ORF1ab/nsp14A2-B93G93GggGggT44AY.160.001519
ORF1ab/nsp14A2-B93G93GggGggT44AY.340.000388
ORF1ab/nsp14A2-B93G93GggGggT44AY.46.60.000289
ORF1ab/nsp14A2-B93G93GggGggT44B.1.1.2770.003035
ORF1ab/nsp14A2-B93G93GggGggT44B.1.36.80.004
ORF1ab/nsp14A2-B93G93GggGggT44B.1.6340.013699
ORF1ab/nsp14A2-B93G93GggGggT44N.50.007067
ORF1ab/nsp14A2-B93G93GggGggT33AY.1060.001005
ORF1ab/nsp14A2-B93G93GggGggT33AY.1090.002219
ORF1ab/nsp14A2-B93G93GggGggT33AY.120.10.000963
ORF1ab/nsp14A2-B93G93GggGggT33AY.240.001293
ORF1ab/nsp14A2-B93G93GggGggT23AY.50.000041
ORF1ab/nsp14A2-B93G93GggGggA13AY.50.000021
ORF1ab/nsp14A2-B93G93GggGggT33AY.740.000347
ORF1ab/nsp14A2-B93G93GggGggT33AY.770.003382
ORF1ab/nsp14A2-B93G93GggGggT33AY.99.20.000276
ORF1ab/nsp14A2-B93G93GggGggT23B0.000256
ORF1ab/nsp14A2-B93G93GggGggA13B0.000128
ORF1ab/nsp14A2-B93G93GggGggT33B.1.1.1890.004539
ORF1ab/nsp14A2-B93G93GggGggT33B.1.1.700.001023
ORF1ab/nsp14A2-B93G93GggGggA33B.1.177.560.002003
ORF1ab/nsp14A2-B93G93GggGggT33B.1.466.20.001174
ORF1ab/nsp14A2-B93G93GggGggT33B.610.017241
ORF1ab/nsp14A2-B93G93GggGggT33P.1.170.000485
ORF1ab/nsp14A2-B93G93GggGggT22A.2.50.000998
ORF1ab/nsp14A2-B93G93GggGggT22A.210.00554
ORF1ab/nsp14A2-B93G93GggGggT22AT.10.010256
ORF1ab/nsp14A2-B93G93GggGggT22AY.10.000791
ORF1ab/nsp14A2-B93G93GggGggT22AY.1140.000462
ORF1ab/nsp14A2-B93G93GggGggT22AY.1170.000169
ORF1ab/nsp14A2-B93G93GggGggA22AY.140.000176
ORF1ab/nsp14A2-B93G93GggGggT22AY.16.10.00094
ORF1ab/nsp14A2-B93G93GggGggT22AY.230.000139
ORF1ab/nsp14A2-B93G93GggGggA12AY.330.000067
ORF1ab/nsp14A2-B93G93GggGggT12AY.330.000067
ORF1ab/nsp14A2-B93G93GggGggT22AY.640.00119
ORF1ab/nsp14A2-B93G93GggGggT22AY.7.10.000225
ORF1ab/nsp14A2-B93G93GggGggT22AY.760.009662
ORF1ab/nsp14A2-B93G93GggGggT12AY.980.000079
ORF1ab/nsp14A2-B93G93GggGggC12AY.980.000079
ORF1ab/nsp14A2-B93G93GggGggT22B.1.1.280.000622
ORF1ab/nsp14A2-B93G93GggGggT22B.1.1.2840.000215
ORF1ab/nsp14A2-B93G93GggGggT22B.1.1.330.000842
ORF1ab/nsp14A2-B93G93GggGggT22B.1.1.500.001358
ORF1ab/nsp14A2-B93G93GggGggT22B.1.177.100.001756
ORF1ab/nsp14A2-B93G93GggGggT22B.1.177.810.000379
ORF1ab/nsp14A2-B93G93GggGggT22B.1.177.860.000367
ORF1ab/nsp14A2-B93G93GggGggT22B.1.2340.000264
ORF1ab/nsp14A2-B93G93GggGggT22B.1.258.140.001961
ORF1ab/nsp14A2-B93G93GggGggT22B.1.360.000292
ORF1ab/nsp14A2-B93G93GggGggT22B.1.36.290.001035
ORF1ab/nsp14A2-B93G93GggGggA22B.1.4270.000101
ORF1ab/nsp14A2-B93G93GggGggT22B.1.440.016667
ORF1ab/nsp14A2-B93G93GggGggT22B.1.4700.002809
ORF1ab/nsp14A2-B93G93GggGggT22B.1.5800.00813
ORF1ab/nsp14A2-B93G93GggGggT12B.1.6000.005848
ORF1ab/nsp14A2-B93G93GggGggA12B.1.6000.005848
ORF1ab/nsp14A2-B93G93GggGggT22B.30.001661
ORF1ab/nsp14A2-B93G93GggGggA12P.1.120.000484
ORF1ab/nsp14A2-B93G93GggGggT12P.1.120.000484
ORF1ab/nsp14A2-B93G93GggGggA12P.20.000187
ORF1ab/nsp14A2-B93G93GggGggT12P.20.000187
ORF1ab/nsp14A2-B93G93GggGggA11A0.000387
ORF1ab/nsp14A2-B93G93GggGggT11A.30.002096
ORF1ab/nsp14A2-B93G93GggGggT11AU.10.001266
ORF1ab/nsp14A2-B93G93GggGggT11AY.120.000316
ORF1ab/nsp14A2-B93G93GggGggT11AY.120.2.10.000498
ORF1ab/nsp14A2-B93G93GggGggT11AY.130.000161
ORF1ab/nsp14A2-B93G93GggGggT11AY.190.00114
ORF1ab/nsp14A2-B93G93GggGggT11AY.3.10.000085
ORF1ab/nsp14A2-B93G93GggGggA11AY.34.10.00051
ORF1ab/nsp14A2-B93G93GggGggT11AY.380.000499
ORF1ab/nsp14A2-B93G93GggGggT11AY.410.000294
ORF1ab/nsp14A2-B93G93GggGggT11AY.46.10.001027
ORF1ab/nsp14A2-B93G93GggGggT11AY.46.20.000635
ORF1ab/nsp14A2-B93G93GggGggT11AY.540.000095
ORF1ab/nsp14A2-B93G93GggGggT11AY.550.000917
ORF1ab/nsp14A2-B93G93GggGggT11AY.610.000105
ORF1ab/nsp14A2-B93G93GggGggA11AY.680.000274
ORF1ab/nsp14A2-B93G93GggGggT11AY.70.000196
ORF1ab/nsp14A2-B93G93GggGggT11AY.710.000475
ORF1ab/nsp14A2-B93G93GggGggT11AY.810.001992
ORF1ab/nsp14A2-B93G93GggGggA11AY.98.10.000048
ORF1ab/nsp14A2-B93G93GggGggA11B.1.1.1530.001095
ORF1ab/nsp14A2-B93G93GggGggT11B.1.1.1610.003534
ORF1ab/nsp14A2-B93G93GggGggA11B.1.1.1720.018182
ORF1ab/nsp14A2-B93G93GggGggA11B.1.1.1740.003378
ORF1ab/nsp14A2-B93G93GggGggT11B.1.1.1920.002309
ORF1ab/nsp14A2-B93G93GggGggA11B.1.1.2580.003257
ORF1ab/nsp14A2-B93G93GggGggT11B.1.1.2940.001266
ORF1ab/nsp14A2-B93G93GggGggT11B.1.1.2970.002237
ORF1ab/nsp14A2-B93G93GggGggT11B.1.1.3170.000412
ORF1ab/nsp14A2-B93G93GggGggT11B.1.1.3760.005952
ORF1ab/nsp14A2-B93G93GggGggT11B.1.1.3890.006061
ORF1ab/nsp14A2-B93G93GggGggT11B.1.1.3940.02439
ORF1ab/nsp14A2-B93G93GggGggT11B.1.1.4340.000349
ORF1ab/nsp14A2-B93G93GggGggT11B.1.1.5210.005348
ORF1ab/nsp14A2-B93G93GggGggT11B.1.1.5230.001563
ORF1ab/nsp14A2-B93G93GggGggT11B.1.1280.000635
ORF1ab/nsp14A2-B93G93GggGggT11B.1.1570.002985
ORF1ab/nsp14A2-B93G93GggGggA11B.1.160.90.007194
ORF1ab/nsp14A2-B93G93GggGggT11B.1.177.180.00116
ORF1ab/nsp14A2-B93G93GggGggT11B.1.177.430.001477
ORF1ab/nsp14A2-B93G93GggGggT11B.1.177.50.001242
ORF1ab/nsp14A2-B93G93GggGggT11B.1.177.500.004695
ORF1ab/nsp14A2-B93G93GggGggT11B.1.177.540.000606
ORF1ab/nsp14A2-B93G93GggGggT11B.1.177.570.000281
ORF1ab/nsp14A2-B93G93GggGggT11B.1.177.600.000218
ORF1ab/nsp14A2-B93G93GggGggT11B.1.177.70.000165
ORF1ab/nsp14A2-B93G93GggGggT11B.1.177.720.00339
ORF1ab/nsp14A2-B93G93GggGggT11B.1.177.740.015152
ORF1ab/nsp14A2-B93G93GggGggT11B.1.177.830.001481
ORF1ab/nsp14A2-B93G93GggGggT11B.1.2250.015385
ORF1ab/nsp14A2-B93G93GggGggA11B.1.2320.000537
ORF1ab/nsp14A2-B93G93GggGggT11B.1.2430.00007
ORF1ab/nsp14A2-B93G93GggGggT11B.1.258.170.000104
ORF1ab/nsp14A2-B93G93GggGggT11B.1.3260.007576
ORF1ab/nsp14A2-B93G93GggGggT11B.1.3400.004292
ORF1ab/nsp14A2-B93G93GggGggA11B.1.36.170.000494
ORF1ab/nsp14A2-B93G93GggGggT11B.1.36.260.002857
ORF1ab/nsp14A2-B93G93GggGggA11B.1.36.360.000602
ORF1ab/nsp14A2-B93G93GggGggT11B.1.3690.000285
ORF1ab/nsp14A2-B93G93GggGggT11B.1.3750.00082
ORF1ab/nsp14A2-B93G93GggGggA11B.1.4040.001302
ORF1ab/nsp14A2-B93G93GggGggT11B.1.4260.001009
ORF1ab/nsp14A2-B93G93GggGggT11B.1.4340.052632
ORF1ab/nsp14A2-B93G93GggGggT11B.1.438.10.000107
ORF1ab/nsp14A2-B93G93GggGggT11B.1.4680.005714
ORF1ab/nsp14A2-B93G93GggGggT11B.1.4980.020408
ORF1ab/nsp14A2-B93G93GggGggA11B.1.5510.00129
ORF1ab/nsp14A2-B93G93GggGggT11B.1.5880.00091
ORF1ab/nsp14A2-B93G93GggGggT11B.1.617.10.000129
ORF1ab/nsp14A2-B93G93GggGggT11B.1.621.10.000506
ORF1ab/nsp14A2-B93G93GggGggT11B.290.003509
ORF1ab/nsp14A2-B93G93GggGggT11B.350.007812
ORF1ab/nsp14A2-B93G93GggGggT11B.60.00091
ORF1ab/nsp14A2-B93G93GggGggT11C.36.30.000567
ORF1ab/nsp14A2-B93G93GggGggT11D.30.005917
ORF1ab/nsp14A2-B93G93GggGggA11P.1.140.000048
ORF1ab/nsp14A2-B93G93GggGggT11P.1.160.000374
ORF1ab/nsp14A2-B93G93GggGggA11P.1.70.000319
ORF1ab/nsp14A2-B93G93GggGggT11Q.70.001111
ORF1ab/nsp14A2-B93G93GggGggA11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.